Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004524

Physical Location & Seq

Genomic Coordinates Forward (+)

37107234 .. 37107872

Gene Structure 639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG315100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGATATCTTTCACACCTCTTTCTTGGCCTGTACGTCTCAGAATCATGATAGGCTTGGCAAAAGGTTTGGCTTATATTCATGAATATAGTCCAAGAAAATATGTCCACGGTGACTTGAGGCCTAGCAATGTACTTCTTGGACAAAACATGGAACCCCATATCACCAATTTTGGACTAGGCCGCCTCGCCAAAGTAACTGAAGAATCCTCATCCTTTCAACTTGAACAAATCACAACTGACACATCATCCCTTCAGAATTCTCCATATGTGCAGAGGGCTGCAAGCTCGATAGCTGCAGCAGCGCCTTGCTATAAAGCTCCTGAGGCCTCCAAAGTTGCCAGGCCATCCCAAAAAAGCGATGTTTACTCATTTGGGGTGATTATGCTGGAGATGATTTCTGCAAAAATGCCATTCAGCAGAGTTGGTTCTGAGGAAATTGATTTAGTTGAATGGTTCCAGATCAGCATTGAGGAAAGGAAGCCAATCATTGATGTATTAGACCGTTTCTTAGCTCCGGATGTAGACATGGAAGAGGAAATTGTTACAGTAATGAATGTTGCTCTTGCTTGTGTTGCTAGAGCCCCTGAAAGAAGACCTTCTATGAGGTGTGTGTGTGATAACTTGGCCAGATTGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

212

Amino Acids

23.65

Weight (kDa)

5.97

Isoelectric Point (pI)

53.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	8 - 69	6.4e-07	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	14 - 205	1.8e-16	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	99 - 207	6.5e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25560 FvH4_1g25560 FvH4_1g25560
malus_domestica	MD15G1396100.v1.1 MD17G1250300.v1.1
prunus_persica	Prupe.3G148600_v2.0.a1
pyrus_communis	pycom17g25420
rosa_chinensis	RchiOBHm_Chr1g0336261 RchiOBHm_Chr2g0123721 RchiOBHm_Chr2g0123751
rosa_laevigata	RLG00000018773
rosa_multiflora	Rmu_co8452975.1_g000001 Rmu_sc0002870.1_g000009 Rmu_sc0021381.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085250 Rroxscaffold_2G00115060 Rroxscaffold_2G00120380 Rroxscaffold_3G00230560 Rroxscaffold_3G00245330 Rroxscaffold_4G00324630 Rroxscaffold_7G00170480 Rroxscaffold_7G00193250 Rroxscaffold_7G00202250 Rroxscaffold_7G00202260
rosa_rugosa	Rorug02G0247500
rosa_samantha	Rh2AG306600 Rh2BG315000 Rh2BG315100 Rh2CG293000 Rh2DG330300 Rh4DG109900
rosa_wichuraiana	Rw2G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	522
AccIII	TCCGGA	1 cut(s)	514
AciI	CCGC	1 cut(s)	181
AcoI	YGGCCR	1 cut(s)	624
AcsI	RAATTY	1 cut(s)	256
AcuI	CTGAAG	2 cut(s)	219, 236
AfaI	GTAC	2 cut(s)	33, 132
AgsI	TTSAA	3 cut(s)	218, 224, 449
AjnI	CCWGG	1 cut(s)	338
AluBI	AGCT	4 cut(s)	285, 293, 317, 512
AluI	AGCT	4 cut(s)	285, 293, 317, 512
Alw26I	GTCTC	1 cut(s)	41
Aor13HI	TCCGGA	1 cut(s)	514
AoxI	GGCC	7 cut(s)	26, 119, 178, 324, 341, 624, 633
ApeKI	GCWGC	4 cut(s)	278, 293, 296, 299
ApoI	RAATTY	1 cut(s)	256
Asp700I	GAANNNNTTC	1 cut(s)	595
AspLEI	GCGC	1 cut(s)	304
AsuHPI	GGTGA	3 cut(s)	122, 154, 388
AxyI	CCTNAGG	1 cut(s)	321
BalI	TGGCCA	1 cut(s)	626
BanII	GRGCYC	1 cut(s)	583
BbsI	GAAGAC	1 cut(s)	598
BbvI	GCAGC	4 cut(s)	265, 280, 308, 311
BccI	CCATC	1 cut(s)	352
BciT130I	CCWGG	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	3 cut(s)	123, 176, 576
BfmI	CTRYAG	1 cut(s)	294
BfoI	RGCGCY	1 cut(s)	305
BglI	GCCNNNNNGGC	1 cut(s)	632
BisI	GCNGC	5 cut(s)	181, 279, 294, 297, 300
BlsI	GCNGC	5 cut(s)	182, 280, 295, 298, 301
Bme1390I	CCNGG	1 cut(s)	340
BmiI	GGNNCC	2 cut(s)	153, 455
BmrFI	CCNGG	1 cut(s)	340
BpiI	GAAGAC	1 cut(s)	598
BpmI	CTGGAG	1 cut(s)	407
BpuEI	CTTGAG	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	106
BsaWI	WCCGGW	1 cut(s)	514
Bse21I	CCTNAGG	1 cut(s)	321
Bse3DI	GCAATG	1 cut(s)	133
BseAI	TCCGGA	1 cut(s)	514
BseBI	CCWGG	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	4 cut(s)	209, 245, 344, 523
BseMI	GCAATG	1 cut(s)	133
BseMII	CTCAG	3 cut(s)	52, 312, 420
BseXI	GCAGC	4 cut(s)	265, 280, 308, 311
BsgI	GTGCAG	1 cut(s)	290
BshFI	GGCC	7 cut(s)	28, 121, 180, 326, 343, 626, 635
BsiSI	CCGG	1 cut(s)	515
BsmAI	GTCTC	1 cut(s)	41
BsmBI	CGTCTC	1 cut(s)	41
BsnI	GGCC	7 cut(s)	28, 121, 180, 326, 343, 626, 635
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp13I	TCCGGA	1 cut(s)	514
Bsp143I	GATC	1 cut(s)	459
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	7 cut(s)	28, 121, 180, 326, 343, 626, 635
BspCNI	CTCAG	3 cut(s)	51, 313, 421
BspEI	TCCGGA	1 cut(s)	514
BspHI	TCATGA	2 cut(s)	45, 79
BspLI	GGNNCC	2 cut(s)	153, 455
BspMAI	CTGCAG	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	340
Bst4CI	ACNGT	3 cut(s)	110, 503, 547
Bst6I	CTCTTC	1 cut(s)	525
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	4 cut(s)	38, 321, 429, 508
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	4 cut(s)	209, 245, 344, 523
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	1 cut(s)	462
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	459
BstMWI	GCNNNNNNNGC	4 cut(s)	299, 323, 572, 632
BstNI	CCWGG	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	338
BstSFI	CTRYAG	1 cut(s)	294
BstV1I	GCAGC	4 cut(s)	265, 280, 308, 311
BstV2I	GAAGAC	1 cut(s)	598
Bsu36I	CCTNAGG	1 cut(s)	321
BsuRI	GGCC	7 cut(s)	28, 121, 180, 326, 343, 626, 635
BtgI	CCRYGG	1 cut(s)	106
BtgZI	GCGATG	1 cut(s)	372
BtsCI	GGATG	4 cut(s)	209, 245, 344, 523
Cac8I	GCNNGC	1 cut(s)	283
CciI	TCATGA	2 cut(s)	45, 79
CfoI	GCGC	1 cut(s)	304
Csp6I	GTAC	2 cut(s)	32, 131
CviAII	CATG	4 cut(s)	46, 80, 148, 526
CviQI	GTAC	2 cut(s)	32, 131
DdeI	CTNAG	4 cut(s)	38, 321, 429, 508
DpnI	GATC	1 cut(s)	461
DpnII	GATC	1 cut(s)	459
EaeI	YGGCCR	1 cut(s)	624
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Eco147I	AGGCCT	2 cut(s)	121, 326
Eco24I	GRGCYC	1 cut(s)	583
Eco32I	GATATC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	219, 236
Eco81I	CCTNAGG	1 cut(s)	321
EcoRI	GAATTC	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	338
EcoRV	GATATC	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	583
Esp3I	CGTCTC	1 cut(s)	41
FaeI	CATG	4 cut(s)	49, 83, 151, 529
FalI	AAGNNNNNCTT	2 cut(s)	580, 612
FatI	CATG	4 cut(s)	45, 79, 147, 525
FauNDI	CATATG	1 cut(s)	265
FblI	GTMKAC	1 cut(s)	522
Fnu4HI	GCNGC	5 cut(s)	181, 279, 294, 297, 300
FokI	GGATG	4 cut(s)	196, 232, 331, 530
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	5 cut(s)	181, 279, 294, 297, 300
FspBI	CTAG	3 cut(s)	123, 176, 576
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	5 cut(s)	181, 279, 294, 297, 300
GsuI	CTGGAG	1 cut(s)	407
HaeII	RGCGCY	1 cut(s)	305
HaeIII	GGCC	7 cut(s)	28, 121, 180, 326, 343, 626, 635
HapII	CCGG	1 cut(s)	515
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	4 cut(s)	49, 83, 151, 529
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HinfI	GANTC	2 cut(s)	42, 203
HpaII	CCGG	1 cut(s)	515
HphI	GGTGA	3 cut(s)	122, 154, 388
Hpy166II	GTNNAC	3 cut(s)	106, 364, 523
Hpy188I	TCNGA	3 cut(s)	41, 255, 430
Hpy188III	TCNNGA	5 cut(s)	46, 80, 320, 457, 515
Hpy8I	GTNNAC	3 cut(s)	106, 364, 523
HpyAV	CCTTC	2 cut(s)	260, 606
HpyCH4III	ACNGT	3 cut(s)	110, 503, 547
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	4 cut(s)	271, 281, 296, 401
HpyF10VI	GCNNNNNNNGC	4 cut(s)	299, 323, 572, 632
HpyF3I	CTNAG	4 cut(s)	38, 321, 429, 508
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	4 cut(s)	49, 83, 151, 529
HspAI	GCGC	1 cut(s)	302
Kpn2I	TCCGGA	1 cut(s)	514
Kzo9I	GATC	1 cut(s)	459
LmnI	GCTCC	2 cut(s)	322, 517
LpnPI	CCDG	8 cut(s)	42, 325, 333, 352, 371, 470, 528, 597
Lsp1109I	GCAGC	4 cut(s)	265, 280, 308, 311
MaeI	CTAG	3 cut(s)	123, 176, 576
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	3 cut(s)	110, 193, 541
MalI	GATC	1 cut(s)	461
MboI	GATC	1 cut(s)	459
MboII	GAAGA	3 cut(s)	212, 542, 603
MhlI	GDGCHC	1 cut(s)	583
MlsI	TGGCCA	1 cut(s)	626
MluCI	AATT	4 cut(s)	166, 256, 435, 537
MluNI	TGGCCA	1 cut(s)	626
Mox20I	TGGCCA	1 cut(s)	626
MroI	TCCGGA	1 cut(s)	514
MroXI	GAANNNNTTC	1 cut(s)	595
MscI	TGGCCA	1 cut(s)	626
Msp20I	TGGCCA	1 cut(s)	626
MspI	CCGG	1 cut(s)	515
MspR9I	CCNGG	1 cut(s)	340
MvaI	CCWGG	1 cut(s)	340
MwoI	GCNNNNNNNGC	4 cut(s)	299, 323, 572, 632
NdeI	CATATG	1 cut(s)	265
NdeII	GATC	1 cut(s)	459
NlaIII	CATG	4 cut(s)	49, 83, 151, 529
NlaIV	GGNNCC	2 cut(s)	153, 455
NmuCI	GTSAC	1 cut(s)	110
PagI	TCATGA	2 cut(s)	45, 79
PceI	AGGCCT	2 cut(s)	121, 326
PdmI	GAANNNNTTC	1 cut(s)	595
PfeI	GAWTC	2 cut(s)	42, 203
PkrI	GCNGC	5 cut(s)	182, 280, 295, 298, 301
Psp6I	CCWGG	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	338
PspN4I	GGNNCC	2 cut(s)	153, 455
PstI	CTGCAG	1 cut(s)	298
RsaI	GTAC	2 cut(s)	33, 132
RsaNI	GTAC	2 cut(s)	32, 131
SatI	GCNGC	5 cut(s)	181, 279, 294, 297, 300
Sau3AI	GATC	1 cut(s)	459
ScrFI	CCNGG	1 cut(s)	340
SduI	GDGCHC	1 cut(s)	583
SetI	ASST	9 cut(s)	19, 37, 67, 287, 295, 319, 514, 598, 608
SfcI	CTRYAG	1 cut(s)	294
SfiI	GGCCNNNNNGGCC	1 cut(s)	632
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	4 cut(s)	166, 256, 435, 537
SseBI	AGGCCT	2 cut(s)	121, 326
SsiI	CCGC	1 cut(s)	181
SspMI	CTAG	3 cut(s)	123, 176, 576
StuI	AGGCCT	2 cut(s)	121, 326
StyD4I	CCNGG	1 cut(s)	338
TaaI	ACNGT	3 cut(s)	110, 503, 547
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	287
TasI	AATT	4 cut(s)	166, 256, 435, 537
TatI	WGTACW	1 cut(s)	130
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	2 cut(s)	42, 203
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	4 cut(s)	278, 293, 296, 299
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	3 cut(s)	68, 96, 566
XapI	RAATTY	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	522
XmnI	GAANNNNTTC	1 cut(s)	595
XspI	CTAG	3 cut(s)	123, 176, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.