Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004524

Physical Location & Seq

Genomic Coordinates Forward (+)

50191098 .. 50195186

Gene Structure 4089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00202260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCAACGAGTGTACTACAGCCCGAAATCTTCGGACAAGTCGGTATCGAGGATAAATCAAATCTACTTGCTGCAATTGTTGCTGTGGGCGTCGCCAAGACTGCTTTCATATTGGTGGCTTGATATTGATCACATGGATGGAAGGAGGTATTTTACATGGGATAGGATGCTTTTCCCGCACCGGAGGAGTATGCGGCTGGAACGGTTGGGTAAGCTTCGTACCCTTTCGGCCCAAGTTGCAAGGCTAGAACAGAAGCTCGCCACGTGTTGCCATAACAAAGGTTATGAATCTTCTCAAAGTAGGCTCATCCAGTTGGATGCGATGTCTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000902 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005975 GO:0005976 GO:0006073 GO:0006464 GO:0006491 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009250 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0015926 GO:0016043 GO:0016049 GO:0016051 GO:0016787 GO:0016798 GO:0019538 GO:0030243 GO:0030244 GO:0030587 GO:0031288 GO:0032502 GO:0032989 GO:0033692 GO:0033919 GO:0034637 GO:0034645 GO:0036211 GO:0040007 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043687 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0051274 GO:0051703 GO:0051704 GO:0051707 GO:0060560 GO:0071704 GO:0071840 GO:0090599 GO:0090600 GO:0090702 GO:0098542 GO:0099120 GO:1901135 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04141 map00510 map01100 map04141

Pfam Domains

Protein Families

DUF5110 Gal_mutarotas_2 Glyco_hydro_31

Protein Analysis

110

Amino Acids

13.27

Weight (kDa)

10.22

Isoelectric Point (pI)

57.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25560 FvH4_1g25560 FvH4_1g25560
malus_domestica	MD15G1396100.v1.1 MD17G1250300.v1.1
prunus_persica	Prupe.3G148600_v2.0.a1
pyrus_communis	pycom17g25420
rosa_chinensis	RchiOBHm_Chr1g0336261 RchiOBHm_Chr2g0123721 RchiOBHm_Chr2g0123751
rosa_laevigata	RLG00000018773
rosa_multiflora	Rmu_co8452975.1_g000001 Rmu_sc0002870.1_g000009 Rmu_sc0021381.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085250 Rroxscaffold_2G00115060 Rroxscaffold_2G00120380 Rroxscaffold_3G00230560 Rroxscaffold_3G00245330 Rroxscaffold_4G00324630 Rroxscaffold_7G00170480 Rroxscaffold_7G00193250 Rroxscaffold_7G00202250 Rroxscaffold_7G00202260
rosa_rugosa	Rorug02G0247500
rosa_samantha	Rh2AG306600 Rh2BG315000 Rh2BG315100 Rh2CG293000 Rh2DG330300 Rh4DG109900
rosa_wichuraiana	Rw2G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	176, 193
AcvI	CACGTG	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	2 cut(s)	14, 220
AflIII	ACRYGT	1 cut(s)	263
AjuI	GAANNNNNNNTTGG	2 cut(s)	88, 120
AluBI	AGCT	2 cut(s)	214, 256
AluI	AGCT	2 cut(s)	214, 256
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	229
BbrPI	CACGTG	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	57
BccI	CCATC	1 cut(s)	131
BclI	TGATCA	1 cut(s)	127
BfaI	CTAG	2 cut(s)	245, 327
BfmI	CTRYAG	1 cut(s)	16
BisI	GCNGC	2 cut(s)	71, 194
BlsI	GCNGC	2 cut(s)	72, 195
BmgT120I	GGNCC	1 cut(s)	229
BmsI	GCATC	2 cut(s)	156, 307
BsaAI	YACGTR	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	126
BsaHI	GRCGYC	1 cut(s)	89
BsaWI	WCCGGW	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	310
Bse8I	GATNNNNATC	1 cut(s)	126
BseGI	GGATG	4 cut(s)	142, 171, 306, 322
BseJI	GATNNNNATC	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	57
BshFI	GGCC	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	181
BsnI	GGCC	1 cut(s)	230
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	2 cut(s)	176, 193
BspANI	GGCC	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	310
BssMI	GATC	1 cut(s)	127
BssNI	GRCGYC	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	204
BstACI	GRCGYC	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	79
BstBAI	YACGTR	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	258
BstF5I	GGATG	4 cut(s)	142, 171, 306, 322
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 100, 175, 236
BstSFI	CTRYAG	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	230
BtsCI	GGATG	4 cut(s)	142, 171, 306, 322
Cac8I	GCNNGC	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	229
CseI	GACGC	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	13, 219
CviAII	CATG	2 cut(s)	133, 156
CviJI	RGCY	8 cut(s)	21, 118, 196, 214, 230, 244, 256, 304
CviKI_1	RGCY	8 cut(s)	21, 118, 196, 214, 230, 244, 256, 304
CviQI	GTAC	2 cut(s)	13, 219
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
Eco72I	CACGTG	1 cut(s)	264
FaeI	CATG	2 cut(s)	136, 159
FaiI	YATR	6 cut(s)	109, 134, 157, 191, 273, 285
FatI	CATG	2 cut(s)	132, 155
FauI	CCCGC	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	2 cut(s)	71, 194
FokI	GGATG	4 cut(s)	149, 178, 293, 329
Fsp4HI	GCNGC	2 cut(s)	71, 194
FspBI	CTAG	2 cut(s)	245, 327
GluI	GCNGC	2 cut(s)	71, 194
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	1 cut(s)	181
HgaI	GACGC	1 cut(s)	78
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	2 cut(s)	136, 159
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	1 cut(s)	287
HpaII	CCGG	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	34
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	1 cut(s)	135
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	3 cut(s)	4, 73, 239
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 100, 175, 236
HpySE526I	ACGT	1 cut(s)	263
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	2 cut(s)	136, 159
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	127
LpnPI	CCDG	3 cut(s)	182, 194, 323
Lsp1109I	GCAGC	1 cut(s)	57
LweI	GCATC	2 cut(s)	156, 307
MaeI	CTAG	2 cut(s)	245, 327
MaeII	ACGT	1 cut(s)	263
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	2 cut(s)	21, 282
MfeI	CAATTG	1 cut(s)	74
MluCI	AATT	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	3 cut(s)	42, 138, 177
MslI	CAYNNNNRTG	2 cut(s)	112, 135
MspI	CCGG	1 cut(s)	181
MunI	CAATTG	1 cut(s)	74
MwoI	GCNNNNNNNGC	4 cut(s)	79, 100, 175, 236
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	2 cut(s)	136, 159
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	2 cut(s)	72, 195
PmaCI	CACGTG	1 cut(s)	264
PmlI	CACGTG	1 cut(s)	264
Ppu21I	YACGTR	1 cut(s)	264
PspCI	CACGTG	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	229
RsaI	GTAC	2 cut(s)	14, 220
RsaNI	GTAC	2 cut(s)	13, 219
RseI	CAYNNNNRTG	2 cut(s)	112, 135
SatI	GCNGC	2 cut(s)	71, 194
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	1 cut(s)	229
SetI	ASST	6 cut(s)	149, 216, 258, 266, 283, 332
SfaNI	GCATC	2 cut(s)	156, 307
SfcI	CTRYAG	1 cut(s)	16
SmiMI	CAYNNNNRTG	2 cut(s)	112, 135
Sse9I	AATT	1 cut(s)	74
SsiI	CCGC	2 cut(s)	176, 193
SspMI	CTAG	2 cut(s)	245, 327
TaaI	ACNGT	1 cut(s)	204
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	1 cut(s)	47
TasI	AATT	1 cut(s)	74
TatI	WGTACW	1 cut(s)	12
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	1 cut(s)	287
TseI	GCWGC	1 cut(s)	70
TspDTI	ATGAA	2 cut(s)	96, 300
XspI	CTAG	2 cut(s)	245, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.