Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004524

Physical Location & Seq

Genomic Coordinates Forward (+)

37005513 .. 37006792

Gene Structure 1280 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49602

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAAGCATCCAAATATCACCACTCTTCTGGCATATTGCTGGTCCATAGATGAGAAGCTGCTCATATATGATTACATTCCGAACGGTGACCTTGCTACTGCAATTCATGGAAAAGCAGGCATGATATCTTTCACACCTCTTTCTTGGCCTGTACGTCTCAGAATCATGATAGGCTTGGCAAAAGGTTTGGCTTATATTCATGAATATAGTCCAAGAAAATATGTCCACGGTGACTTGAGGCCTAGCAATGTACTTCTTGGACAAAACATGGAACCCCATATCACCAATTTTGGACTAGGCCGCCTCGCCAAAGTAACTGAAGAATCCTCATCCTTTCAACTTGAACAAATCACAACTGACACATCATCCCTTCAGAATTCTCCATATGTGCAGAGGGCTGCAAGCTCGATAGCTGCAGCAGCGCCTTGCTATAAAGCTCCTGAGGCCTCCAAAGTTGCCAGGCCATCCCAAAAAAGCGATGTTTACTCATTTGGGGTGATTATGCTGGAGATGATTTCTGCAAAAATGCCATTCAGCAGAGTTGGTTCTGAGGAAATTGATTTAGTTGAATGGTTCCAGATCAGCATTGAGGAAAGGAAGCCAATCATTGATGTATTAGACCGTTTCTTAGCTCCGGATGTAGACATGGAAGAGGAAATTGTTACAGTAATGAATGTTGCTCTTGCTTGTGTTGCTAGAGCCCCTGAAAGAAGACCTTCTATGAGGTGTGTGTGTGATAACTTGGCCAGATTGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

252

Amino Acids

28.09

Weight (kDa)

5.99

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 245	1.8e-21	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	2 - 247	1.8e-22	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25560 FvH4_1g25560 FvH4_1g25560
malus_domestica	MD15G1396100.v1.1 MD17G1250300.v1.1
prunus_persica	Prupe.3G148600_v2.0.a1
pyrus_communis	pycom17g25420
rosa_chinensis	RchiOBHm_Chr1g0336261 RchiOBHm_Chr2g0123721 RchiOBHm_Chr2g0123751
rosa_laevigata	RLG00000018773
rosa_multiflora	Rmu_co8452975.1_g000001 Rmu_sc0002870.1_g000009 Rmu_sc0021381.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085250 Rroxscaffold_2G00115060 Rroxscaffold_2G00120380 Rroxscaffold_3G00230560 Rroxscaffold_3G00245330 Rroxscaffold_4G00324630 Rroxscaffold_7G00170480 Rroxscaffold_7G00193250 Rroxscaffold_7G00202250 Rroxscaffold_7G00202260
rosa_rugosa	Rorug02G0247500
rosa_samantha	Rh2AG306600 Rh2BG315000 Rh2BG315100 Rh2CG293000 Rh2DG330300 Rh4DG109900
rosa_wichuraiana	Rw2G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	642
AccIII	TCCGGA	1 cut(s)	634
AciI	CCGC	1 cut(s)	301
AcoI	YGGCCR	1 cut(s)	744
AcsI	RAATTY	1 cut(s)	376
AcuI	CTGAAG	2 cut(s)	339, 356
AfaI	GTAC	2 cut(s)	153, 252
AgsI	TTSAA	3 cut(s)	338, 344, 569
AjnI	CCWGG	1 cut(s)	458
AluBI	AGCT	5 cut(s)	58, 405, 413, 437, 632
AluI	AGCT	5 cut(s)	58, 405, 413, 437, 632
Alw26I	GTCTC	1 cut(s)	161
Aor13HI	TCCGGA	1 cut(s)	634
AoxI	GGCC	7 cut(s)	146, 239, 298, 444, 461, 744, 753
ApeKI	GCWGC	5 cut(s)	58, 398, 413, 416, 419
ApoI	RAATTY	1 cut(s)	376
Asp700I	GAANNNNTTC	1 cut(s)	715
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	1 cut(s)	42
AsuHPI	GGTGA	5 cut(s)	10, 98, 242, 274, 508
AvaII	GGWCC	1 cut(s)	42
AxyI	CCTNAGG	1 cut(s)	441
BalI	TGGCCA	1 cut(s)	746
BanII	GRGCYC	1 cut(s)	703
BbsI	GAAGAC	1 cut(s)	718
BbvI	GCAGC	5 cut(s)	45, 385, 400, 428, 431
BccI	CCATC	1 cut(s)	472
BciT130I	CCWGG	1 cut(s)	460
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	3 cut(s)	243, 296, 696
BfmI	CTRYAG	1 cut(s)	414
BfoI	RGCGCY	1 cut(s)	425
BglI	GCCNNNNNGGC	1 cut(s)	752
BisI	GCNGC	6 cut(s)	59, 301, 399, 414, 417, 420
BlsI	GCNGC	6 cut(s)	60, 302, 400, 415, 418, 421
Bme1390I	CCNGG	1 cut(s)	460
Bme18I	GGWCC	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	42
BmiI	GGNNCC	2 cut(s)	273, 575
BmrFI	CCNGG	1 cut(s)	460
BmsI	GCATC	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	718
BpmI	CTGGAG	1 cut(s)	527
BpuEI	CTTGAG	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	226
BsaWI	WCCGGW	1 cut(s)	634
Bse21I	CCTNAGG	1 cut(s)	441
Bse3DI	GCAATG	1 cut(s)	253
BseAI	TCCGGA	1 cut(s)	634
BseBI	CCWGG	1 cut(s)	460
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	5 cut(s)	7, 329, 365, 464, 643
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	3 cut(s)	172, 432, 540
BseXI	GCAGC	5 cut(s)	45, 385, 400, 428, 431
BsgI	GTGCAG	1 cut(s)	410
BshFI	GGCC	7 cut(s)	148, 241, 300, 446, 463, 746, 755
BsiSI	CCGG	1 cut(s)	635
BsmAI	GTCTC	1 cut(s)	161
BsmBI	CGTCTC	1 cut(s)	161
BsnI	GGCC	7 cut(s)	148, 241, 300, 446, 463, 746, 755
Bsp1286I	GDGCHC	1 cut(s)	703
Bsp13I	TCCGGA	1 cut(s)	634
Bsp143I	GATC	1 cut(s)	579
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	7 cut(s)	148, 241, 300, 446, 463, 746, 755
BspCNI	CTCAG	3 cut(s)	171, 433, 541
BspEI	TCCGGA	1 cut(s)	634
BspHI	TCATGA	2 cut(s)	165, 199
BspLI	GGNNCC	2 cut(s)	273, 575
BspMAI	CTGCAG	1 cut(s)	418
BsrDI	GCAATG	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	1 cut(s)	579
Bst2UI	CCWGG	1 cut(s)	460
Bst4CI	ACNGT	4 cut(s)	86, 230, 623, 667
Bst6I	CTCTTC	2 cut(s)	30, 645
BstC8I	GCNNGC	2 cut(s)	118, 403
BstDEI	CTNAG	4 cut(s)	158, 441, 549, 628
BstDSI	CCRYGG	1 cut(s)	226
BstEII	GGTNACC	1 cut(s)	86
BstF5I	GGATG	5 cut(s)	7, 329, 365, 464, 643
BstH2I	RGCGCY	1 cut(s)	425
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	1 cut(s)	582
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	1 cut(s)	579
BstMWI	GCNNNNNNNGC	4 cut(s)	419, 443, 692, 752
BstNI	CCWGG	1 cut(s)	460
BstPI	GGTNACC	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	458
BstSFI	CTRYAG	1 cut(s)	414
BstV1I	GCAGC	5 cut(s)	45, 385, 400, 428, 431
BstV2I	GAAGAC	1 cut(s)	718
BstXI	CCANNNNNNTGG	1 cut(s)	28
Bsu36I	CCTNAGG	1 cut(s)	441
BsuRI	GGCC	7 cut(s)	148, 241, 300, 446, 463, 746, 755
BtgI	CCRYGG	1 cut(s)	226
BtgZI	GCGATG	1 cut(s)	492
BtsCI	GGATG	5 cut(s)	7, 329, 365, 464, 643
Cac8I	GCNNGC	2 cut(s)	118, 403
CciI	TCATGA	2 cut(s)	165, 199
CfoI	GCGC	1 cut(s)	424
Cfr13I	GGNCC	1 cut(s)	42
Csp6I	GTAC	2 cut(s)	152, 251
CviAII	CATG	6 cut(s)	107, 121, 166, 200, 268, 646
CviQI	GTAC	2 cut(s)	152, 251
DdeI	CTNAG	4 cut(s)	158, 441, 549, 628
DpnI	GATC	1 cut(s)	581
DpnII	GATC	1 cut(s)	579
EaeI	YGGCCR	1 cut(s)	744
Eam1104I	CTCTTC	2 cut(s)	30, 645
EarI	CTCTTC	2 cut(s)	30, 645
Eco147I	AGGCCT	2 cut(s)	241, 446
Eco24I	GRGCYC	1 cut(s)	703
Eco32I	GATATC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	42
Eco57I	CTGAAG	2 cut(s)	339, 356
Eco81I	CCTNAGG	1 cut(s)	441
Eco91I	GGTNACC	1 cut(s)	86
EcoO65I	GGTNACC	1 cut(s)	86
EcoRI	GAATTC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	458
EcoRV	GATATC	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	703
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	6 cut(s)	110, 124, 169, 203, 271, 649
FalI	AAGNNNNNCTT	2 cut(s)	700, 732
FatI	CATG	6 cut(s)	106, 120, 165, 199, 267, 645
FauNDI	CATATG	1 cut(s)	385
FblI	GTMKAC	1 cut(s)	642
Fnu4HI	GCNGC	6 cut(s)	59, 301, 399, 414, 417, 420
FokI	GGATG	4 cut(s)	316, 352, 451, 650
FriOI	GRGCYC	1 cut(s)	703
Fsp4HI	GCNGC	6 cut(s)	59, 301, 399, 414, 417, 420
FspBI	CTAG	3 cut(s)	243, 296, 696
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	6 cut(s)	59, 301, 399, 414, 417, 420
GsuI	CTGGAG	1 cut(s)	527
HaeII	RGCGCY	1 cut(s)	425
HaeIII	GGCC	7 cut(s)	148, 241, 300, 446, 463, 746, 755
HapII	CCGG	1 cut(s)	635
HhaI	GCGC	1 cut(s)	424
Hin1II	CATG	6 cut(s)	110, 124, 169, 203, 271, 649
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HinfI	GANTC	2 cut(s)	162, 323
HpaII	CCGG	1 cut(s)	635
HphI	GGTGA	5 cut(s)	10, 98, 242, 274, 508
Hpy166II	GTNNAC	3 cut(s)	226, 484, 643
Hpy188I	TCNGA	4 cut(s)	81, 161, 375, 550
Hpy188III	TCNNGA	5 cut(s)	166, 200, 440, 577, 635
Hpy8I	GTNNAC	3 cut(s)	226, 484, 643
HpyAV	CCTTC	2 cut(s)	380, 726
HpyCH4III	ACNGT	4 cut(s)	86, 230, 623, 667
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	5 cut(s)	101, 391, 401, 416, 521
HpyF10VI	GCNNNNNNNGC	4 cut(s)	419, 443, 692, 752
HpyF3I	CTNAG	4 cut(s)	158, 441, 549, 628
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	6 cut(s)	110, 124, 169, 203, 271, 649
HspAI	GCGC	1 cut(s)	422
Kpn2I	TCCGGA	1 cut(s)	634
Kzo9I	GATC	1 cut(s)	579
LmnI	GCTCC	2 cut(s)	442, 637
Lsp1109I	GCAGC	5 cut(s)	45, 385, 400, 428, 431
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	3 cut(s)	243, 296, 696
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	4 cut(s)	86, 230, 313, 661
MalI	GATC	1 cut(s)	581
MboI	GATC	1 cut(s)	579
MboII	GAAGA	4 cut(s)	17, 332, 662, 723
MhlI	GDGCHC	1 cut(s)	703
MlsI	TGGCCA	1 cut(s)	746
MluCI	AATT	5 cut(s)	102, 286, 376, 555, 657
MluNI	TGGCCA	1 cut(s)	746
Mox20I	TGGCCA	1 cut(s)	746
MroI	TCCGGA	1 cut(s)	634
MroXI	GAANNNNTTC	1 cut(s)	715
MscI	TGGCCA	1 cut(s)	746
Msp20I	TGGCCA	1 cut(s)	746
MspI	CCGG	1 cut(s)	635
MspR9I	CCNGG	1 cut(s)	460
MvaI	CCWGG	1 cut(s)	460
MwoI	GCNNNNNNNGC	4 cut(s)	419, 443, 692, 752
NdeI	CATATG	1 cut(s)	385
NdeII	GATC	1 cut(s)	579
NlaIII	CATG	6 cut(s)	110, 124, 169, 203, 271, 649
NlaIV	GGNNCC	2 cut(s)	273, 575
NmuCI	GTSAC	2 cut(s)	86, 230
PagI	TCATGA	2 cut(s)	165, 199
PceI	AGGCCT	2 cut(s)	241, 446
PdmI	GAANNNNTTC	1 cut(s)	715
PfeI	GAWTC	2 cut(s)	162, 323
PkrI	GCNGC	6 cut(s)	60, 302, 400, 415, 418, 421
Psp6I	CCWGG	1 cut(s)	458
PspEI	GGTNACC	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	458
PspN4I	GGNNCC	2 cut(s)	273, 575
PspPI	GGNCC	1 cut(s)	42
PstI	CTGCAG	1 cut(s)	418
RsaI	GTAC	2 cut(s)	153, 252
RsaNI	GTAC	2 cut(s)	152, 251
SatI	GCNGC	6 cut(s)	59, 301, 399, 414, 417, 420
Sau3AI	GATC	1 cut(s)	579
Sau96I	GGNCC	1 cut(s)	42
ScrFI	CCNGG	1 cut(s)	460
SduI	GDGCHC	1 cut(s)	703
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	1 cut(s)	414
SfiI	GGCCNNNNNGGCC	1 cut(s)	752
SinI	GGWCC	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	5 cut(s)	102, 286, 376, 555, 657
SseBI	AGGCCT	2 cut(s)	241, 446
SsiI	CCGC	1 cut(s)	301
SspMI	CTAG	3 cut(s)	243, 296, 696
StuI	AGGCCT	2 cut(s)	241, 446
StyD4I	CCNGG	1 cut(s)	458
TaaI	ACNGT	4 cut(s)	86, 230, 623, 667
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	407
TasI	AATT	5 cut(s)	102, 286, 376, 555, 657
TatI	WGTACW	1 cut(s)	250
TauI	GCSGC	1 cut(s)	303
TfiI	GAWTC	2 cut(s)	162, 323
TseFI	GTSAC	2 cut(s)	86, 230
TseI	GCWGC	5 cut(s)	58, 398, 413, 416, 419
Tsp45I	GTSAC	2 cut(s)	86, 230
TspDTI	ATGAA	5 cut(s)	17, 95, 188, 216, 686
VpaK11BI	GGWCC	1 cut(s)	42
XapI	RAATTY	1 cut(s)	376
XmiI	GTMKAC	1 cut(s)	642
XmnI	GAANNNNTTC	1 cut(s)	715
XspI	CTAG	3 cut(s)	243, 296, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.