Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004524

Physical Location & Seq

Genomic Coordinates Reverse (-)

56170918 .. 56175670

Gene Structure 4753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00324630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCGCCAATCAATGGCATCGATCTTTCAGCAATTTCGACAACTCGGCCTATTAGATCTCTTCTCCGGCGGCAAAGGCCACCGACAGTTCTCAAAGGAAATATTCCTTTGGTCTCCACCTTGCCTTTGTTACGAACGAGAGGAGCAGGAAGGGAAAGAGACGACCCGGGAAAAGGGGTTCCAGATTGGTGTGTGGGAAGAAGAAGAGAACGAAGAAGAGAAGATGCAGATCAAGACCGTAGCTTTACGGATTGCTGCGGTAGCTTGGATCGTACTCTAGAGCTTGGTTTGCGGTTTGTGGGTTCGGTTCGTGACGAAGTAAGAACAAGAAGCCGGGGGTGGACTGTTTCGGCGATCCGATCCGAAACAGTTGGATGGTGTCAAATCTGGAGCTGCAGGTCCGGCTTGAGACCGGTGCTGCACTGCTCGGCTTTTGGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.56

Weight (kDa)

11.14

Isoelectric Point (pI)

62.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25560 FvH4_1g25560 FvH4_1g25560
malus_domestica	MD15G1396100.v1.1 MD17G1250300.v1.1
prunus_persica	Prupe.3G148600_v2.0.a1
pyrus_communis	pycom17g25420
rosa_chinensis	RchiOBHm_Chr1g0336261 RchiOBHm_Chr2g0123721 RchiOBHm_Chr2g0123751
rosa_laevigata	RLG00000018773
rosa_multiflora	Rmu_co8452975.1_g000001 Rmu_sc0002870.1_g000009 Rmu_sc0021381.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085250 Rroxscaffold_2G00115060 Rroxscaffold_2G00120380 Rroxscaffold_3G00230560 Rroxscaffold_3G00245330 Rroxscaffold_4G00324630 Rroxscaffold_7G00170480 Rroxscaffold_7G00193250 Rroxscaffold_7G00202250 Rroxscaffold_7G00202260
rosa_rugosa	Rorug02G0247500
rosa_samantha	Rh2AG306600 Rh2BG315000 Rh2BG315100 Rh2CG293000 Rh2DG330300 Rh4DG109900
rosa_wichuraiana	Rw2G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	387
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	14
AciI	CCGC	3 cut(s)	70, 258, 292
AclWI	GGATC	3 cut(s)	276, 349, 354
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	2 cut(s)	14, 173
AgeI	ACCGGT	1 cut(s)	412
AloI	GAACNNNNNNTCC	2 cut(s)	162, 194
AluBI	AGCT	4 cut(s)	243, 264, 283, 393
AluI	AGCT	4 cut(s)	243, 264, 283, 393
Alw26I	GTCTC	3 cut(s)	118, 153, 403
AlwI	GGATC	3 cut(s)	276, 349, 354
Ama87I	CYCGRG	1 cut(s)	166
AoxI	GGCC	2 cut(s)	47, 77
ApeKI	GCWGC	3 cut(s)	255, 393, 418
AsiGI	ACCGGT	1 cut(s)	412
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	399
AsuC2I	CCSGG	3 cut(s)	167, 168, 335
AvaI	CYCGRG	1 cut(s)	166
AvaII	GGWCC	1 cut(s)	399
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	3 cut(s)	242, 380, 405
BccI	CCATC	1 cut(s)	369
BcnI	CCSGG	3 cut(s)	167, 168, 335
BcoDI	GTCTC	3 cut(s)	118, 153, 403
BfaI	CTAG	1 cut(s)	278
BfmI	CTRYAG	1 cut(s)	394
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	387
BglII	AGATCT	1 cut(s)	56
BisI	GCNGC	4 cut(s)	71, 256, 394, 419
BlsI	GCNGC	4 cut(s)	72, 257, 395, 420
Bme1390I	CCNGG	3 cut(s)	167, 168, 335
Bme18I	GGWCC	1 cut(s)	399
BmeT110I	CYCGRG	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	399
BmiI	GGNNCC	2 cut(s)	6, 180
BmrFI	CCNGG	3 cut(s)	167, 168, 335
BmsI	GCATC	2 cut(s)	27, 214
BpmI	CTGGAG	1 cut(s)	409
BpuEI	CTTGAG	1 cut(s)	427
BpuMI	CCSGG	3 cut(s)	167, 168, 335
Bsa29I	ATCGAT	1 cut(s)	21
BsaBI	GATNNNNATC	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	2 cut(s)	118, 403
BsaJI	CCNNGG	2 cut(s)	166, 334
BsaWI	WCCGGW	1 cut(s)	412
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 173
Bse118I	RCCGGY	1 cut(s)	412
Bse8I	GATNNNNATC	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	2 cut(s)	166, 334
BseGI	GGATG	1 cut(s)	380
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	14, 173
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	3 cut(s)	242, 380, 405
BsgI	GTGCAG	1 cut(s)	404
BshFI	GGCC	2 cut(s)	49, 79
BshNI	GGYRCC	1 cut(s)	4
BshTI	ACCGGT	1 cut(s)	412
BshVI	ATCGAT	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	166
BsiSI	CCGG	5 cut(s)	67, 167, 334, 402, 413
BslI	CCNNNNNNNGG	2 cut(s)	14, 173
BsmAI	GTCTC	3 cut(s)	118, 153, 403
BsmBI	CGTCTC	1 cut(s)	153
BsnI	GGCC	2 cut(s)	49, 79
Bso31I	GGTCTC	2 cut(s)	118, 403
BsoBI	CYCGRG	1 cut(s)	166
Bsp143I	GATC	6 cut(s)	22, 56, 229, 268, 354, 359
BspACI	CCGC	3 cut(s)	70, 258, 292
BspANI	GGCC	2 cut(s)	49, 79
BspDI	ATCGAT	1 cut(s)	21
BspLI	GGNNCC	2 cut(s)	6, 180
BspMAI	CTGCAG	1 cut(s)	398
BspMI	ACCTGC	1 cut(s)	387
BspPI	GGATC	3 cut(s)	276, 349, 354
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	2 cut(s)	118, 403
BsrFI	RCCGGY	1 cut(s)	412
BssAI	RCCGGY	1 cut(s)	412
BssECI	CCNNGG	2 cut(s)	166, 334
BssMI	GATC	6 cut(s)	22, 56, 229, 268, 354, 359
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	4 cut(s)	88, 239, 346, 370
Bst6I	CTCTTC	3 cut(s)	66, 199, 211
BstACI	GRCGYC	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	380
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	6 cut(s)	25, 59, 232, 271, 357, 362
BstMAI	GTCTC	3 cut(s)	118, 153, 403
BstMBI	GATC	6 cut(s)	22, 56, 229, 268, 354, 359
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 261, 289, 402
BstSCI	CCNGG	3 cut(s)	165, 166, 333
BstSFI	CTRYAG	1 cut(s)	394
BstV1I	GCAGC	3 cut(s)	242, 380, 405
BstX2I	RGATCY	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	56
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	49, 79
BsuTUI	ATCGAT	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	380
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	1 cut(s)	421
BveI	ACCTGC	1 cut(s)	387
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	399
Cfr9I	CCCGGG	1 cut(s)	166
ClaI	ATCGAT	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	273
CspAI	ACCGGT	1 cut(s)	412
CviJI	RGCY	9 cut(s)	49, 79, 243, 264, 283, 333, 393, 405, 431
CviKI_1	RGCY	9 cut(s)	49, 79, 243, 264, 283, 333, 393, 405, 431
CviQI	GTAC	1 cut(s)	273
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	6 cut(s)	24, 58, 231, 270, 356, 361
DpnII	GATC	6 cut(s)	22, 56, 229, 268, 354, 359
Eam1104I	CTCTTC	3 cut(s)	66, 199, 211
EarI	CTCTTC	3 cut(s)	66, 199, 211
Eco31I	GGTCTC	2 cut(s)	118, 403
Eco47I	GGWCC	1 cut(s)	399
Eco88I	CYCGRG	1 cut(s)	166
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	153
Fnu4HI	GCNGC	4 cut(s)	71, 256, 394, 419
FokI	GGATG	1 cut(s)	387
Fsp4HI	GCNGC	4 cut(s)	71, 256, 394, 419
FspBI	CTAG	1 cut(s)	278
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	71, 256, 394, 419
GsuI	CTGGAG	1 cut(s)	409
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	49, 79
HapII	CCGG	5 cut(s)	67, 167, 334, 402, 413
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HpaII	CCGG	5 cut(s)	67, 167, 334, 402, 413
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188I	TCNGA	2 cut(s)	359, 364
Hpy188III	TCNNGA	5 cut(s)	182, 233, 278, 311, 388
Hpy8I	GTNNAC	1 cut(s)	342
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	4 cut(s)	88, 239, 346, 370
HpyCH4V	TGCA	3 cut(s)	227, 396, 421
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 261, 289, 402
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	6 cut(s)	22, 56, 229, 268, 354, 359
LmnI	GCTCC	2 cut(s)	143, 390
LpnPI	CCDG	9 cut(s)	80, 132, 180, 195, 347, 373, 382, 415, 426
Lsp1109I	GCAGC	3 cut(s)	242, 380, 405
LweI	GCATC	2 cut(s)	27, 214
MaeI	CTAG	1 cut(s)	278
MaeIII	GTNAC	2 cut(s)	129, 311
MalI	GATC	6 cut(s)	24, 58, 231, 270, 356, 361
MboI	GATC	6 cut(s)	22, 56, 229, 268, 354, 359
MboII	GAAGA	7 cut(s)	53, 210, 213, 216, 225, 228, 233
MflI	RGATCY	1 cut(s)	56
MluCI	AATT	1 cut(s)	33
Mly113I	GGCGCC	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	352
MnlI	CCTC	1 cut(s)	134
MspI	CCGG	5 cut(s)	67, 167, 334, 402, 413
MspR9I	CCNGG	3 cut(s)	167, 168, 335
MwoI	GCNNNNNNNGC	4 cut(s)	76, 261, 289, 402
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	3 cut(s)	167, 168, 335
NdeII	GATC	6 cut(s)	22, 56, 229, 268, 354, 359
NlaIV	GGNNCC	2 cut(s)	6, 180
NmeAIII	GCCGAG	2 cut(s)	25, 407
NmuCI	GTSAC	1 cut(s)	311
PflMI	CCANNNNNTGG	1 cut(s)	14
PinAI	ACCGGT	1 cut(s)	412
PkrI	GCNGC	4 cut(s)	72, 257, 395, 420
PluTI	GGCGCC	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	6, 180
PspPI	GGNCC	1 cut(s)	399
PstI	CTGCAG	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	56
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SatI	GCNGC	4 cut(s)	71, 256, 394, 419
Sau3AI	GATC	6 cut(s)	22, 56, 229, 268, 354, 359
Sau96I	GGNCC	1 cut(s)	399
ScrFI	CCNGG	3 cut(s)	167, 168, 335
SetI	ASST	6 cut(s)	122, 245, 266, 285, 395, 401
SfaNI	GCATC	2 cut(s)	27, 214
SfcI	CTRYAG	1 cut(s)	394
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	1 cut(s)	399
SmaI	CCCGGG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	406
SmoI	CTYRAG	1 cut(s)	406
Sse9I	AATT	1 cut(s)	33
SsiI	CCGC	3 cut(s)	70, 258, 292
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	103
SspMI	CTAG	1 cut(s)	278
StyD4I	CCNGG	3 cut(s)	165, 166, 333
TaaI	ACNGT	4 cut(s)	88, 239, 346, 370
TaqI	TCGA	2 cut(s)	21, 38
TasI	AATT	1 cut(s)	33
TauI	GCSGC	1 cut(s)	73
TscAI	CASTG	1 cut(s)	428
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	3 cut(s)	255, 393, 418
Tsp45I	GTSAC	1 cut(s)	311
TspGWI	ACGGA	1 cut(s)	263
TspMI	CCCGGG	1 cut(s)	166
TspRI	CASTG	1 cut(s)	428
Van91I	CCANNNNNTGG	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	399
XbaI	TCTAGA	1 cut(s)	277
XmaI	CCCGGG	1 cut(s)	166
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.