Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004524

Physical Location & Seq

Genomic Coordinates Forward (+)

10939239 .. 10942736

Gene Structure 3498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00170480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTGTCACCAATGTAGGTGGAATTATAGAAATAAAGAGGATGTGGAGCAAGTTGATTCTAAGTTTGATGAGCATGATGTTCCGTATGATGTTTTGTGGCTTGATATTGATCACACGGATGGAAGGAGGTGTTTTACATGGGGTAGGATGCTTTTCCCCGCACCTGGAGGAGTATACTTGTTGGAACGTTTGGGAAGATCCGACCGTTGGATCTTCGTGACAATTTTAGAGGATGATCCTAAGGGCAACTGGGAGGATCTGACCATCAGCATTGAGGAAAGGAAGCCAGGCATTGATGTATTAGATCGTTTCTTAGCTCCGGATGTAGACATGGAAGAGGAAATTGTTACAGTAATGAATATTGCTCTTGCTTGTGTTGCTAGAGCCCCCGAAAGAAGACCTTCTATGAGGTGTGTCTGTGATAACTTGGCTAGATTGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000902 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005975 GO:0005976 GO:0006073 GO:0006464 GO:0006491 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009250 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0015926 GO:0016043 GO:0016049 GO:0016051 GO:0016787 GO:0016798 GO:0019538 GO:0030243 GO:0030244 GO:0030587 GO:0031288 GO:0032502 GO:0032989 GO:0033692 GO:0033919 GO:0034637 GO:0034645 GO:0036211 GO:0040007 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043687 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0051274 GO:0051703 GO:0051704 GO:0051707 GO:0060560 GO:0071704 GO:0071840 GO:0090599 GO:0090600 GO:0090702 GO:0098542 GO:0099120 GO:1901135 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04141 map00510 map01100 map04141

Pfam Domains

Protein Families

DUF5110 Gal_mutarotas_2 Glyco_hydro_31

Protein Analysis

147

Amino Acids

17.21

Weight (kDa)

4.73

Isoelectric Point (pI)

62.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_31_2nd	PF01055	3 - 58	1.3e-15	Glycosyl hydrolases family 31 TIM-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25560 FvH4_1g25560 FvH4_1g25560
malus_domestica	MD15G1396100.v1.1 MD17G1250300.v1.1
prunus_persica	Prupe.3G148600_v2.0.a1
pyrus_communis	pycom17g25420
rosa_chinensis	RchiOBHm_Chr1g0336261 RchiOBHm_Chr2g0123721 RchiOBHm_Chr2g0123751
rosa_laevigata	RLG00000018773
rosa_multiflora	Rmu_co8452975.1_g000001 Rmu_sc0002870.1_g000009 Rmu_sc0021381.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085250 Rroxscaffold_2G00115060 Rroxscaffold_2G00120380 Rroxscaffold_3G00230560 Rroxscaffold_3G00245330 Rroxscaffold_4G00324630 Rroxscaffold_7G00170480 Rroxscaffold_7G00193250 Rroxscaffold_7G00202250 Rroxscaffold_7G00202260
rosa_rugosa	Rorug02G0247500
rosa_samantha	Rh2AG306600 Rh2BG315000 Rh2BG315100 Rh2CG293000 Rh2DG330300 Rh4DG109900
rosa_wichuraiana	Rw2G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	174, 327
AccIII	TCCGGA	1 cut(s)	319
AciI	CCGC	1 cut(s)	159
AclI	AACGTT	1 cut(s)	187
AclWI	GGATC	4 cut(s)	192, 218, 230, 264
AfiI	CCNNNNNNNGG	2 cut(s)	164, 207
AjnI	CCWGG	2 cut(s)	163, 286
AluBI	AGCT	1 cut(s)	317
AluI	AGCT	1 cut(s)	317
AlwI	GGATC	4 cut(s)	192, 218, 230, 264
Aor13HI	TCCGGA	1 cut(s)	319
AoxI	GGCC	1 cut(s)	438
Asp700I	GAANNNNTTC	1 cut(s)	400
AxyI	CCTNAGG	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	388
BbsI	GAAGAC	1 cut(s)	403
BccI	CCATC	2 cut(s)	113, 272
BciT130I	CCWGG	2 cut(s)	165, 288
BclI	TGATCA	1 cut(s)	109
BfaI	CTAG	2 cut(s)	381, 432
Bme1390I	CCNGG	2 cut(s)	165, 288
BmrFI	CCNGG	2 cut(s)	165, 288
BmrI	ACTGGG	1 cut(s)	259
BmsI	GCATC	1 cut(s)	138
BmuI	ACTGGG	1 cut(s)	259
BpiI	GAAGAC	1 cut(s)	403
BpmI	CTGGAG	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	108
BsaWI	WCCGGW	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 207
Bse1I	ACTGG	1 cut(s)	254
Bse21I	CCTNAGG	1 cut(s)	240
Bse8I	GATNNNNATC	1 cut(s)	108
BseAI	TCCGGA	1 cut(s)	319
BseBI	CCWGG	2 cut(s)	165, 288
BseGI	GGATG	5 cut(s)	46, 124, 153, 238, 328
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	2 cut(s)	164, 207
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	183
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	1 cut(s)	440
BsiEI	CGRYCG	1 cut(s)	205
BsiSI	CCGG	1 cut(s)	320
BslI	CCNNNNNNNGG	2 cut(s)	164, 207
BsnI	GGCC	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp13I	TCCGGA	1 cut(s)	319
Bsp143I	GATC	6 cut(s)	109, 197, 210, 235, 256, 304
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	1 cut(s)	440
BspEI	TCCGGA	1 cut(s)	319
BspPI	GGATC	4 cut(s)	192, 218, 230, 264
BsrI	ACTGG	1 cut(s)	254
BssMI	GATC	6 cut(s)	109, 197, 210, 235, 256, 304
BssNAI	GTATAC	1 cut(s)	175
Bst1107I	GTATAC	1 cut(s)	175
Bst2UI	CCWGG	2 cut(s)	165, 288
Bst4CI	ACNGT	2 cut(s)	206, 352
Bst6I	CTCTTC	1 cut(s)	330
BstDEI	CTNAG	3 cut(s)	60, 240, 313
BstF5I	GGATG	5 cut(s)	46, 124, 153, 238, 328
BstKTI	GATC	6 cut(s)	112, 200, 213, 238, 259, 307
BstMBI	GATC	6 cut(s)	109, 197, 210, 235, 256, 304
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 437
BstNI	CCWGG	2 cut(s)	165, 288
BstSCI	CCNGG	2 cut(s)	163, 286
BstV2I	GAAGAC	1 cut(s)	403
BstX2I	RGATCY	3 cut(s)	197, 210, 256
BstYI	RGATCY	3 cut(s)	197, 210, 256
BstZ17I	GTATAC	1 cut(s)	175
Bsu36I	CCTNAGG	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	440
BtsCI	GGATG	5 cut(s)	46, 124, 153, 238, 328
CspCI	CAANNNNNGTGG	1 cut(s)	34
CviAII	CATG	3 cut(s)	74, 138, 331
CviJI	RGCY	6 cut(s)	100, 286, 317, 386, 431, 440
CviKI_1	RGCY	6 cut(s)	100, 286, 317, 386, 431, 440
DdeI	CTNAG	3 cut(s)	60, 240, 313
DpnI	GATC	6 cut(s)	111, 199, 212, 237, 258, 306
DpnII	GATC	6 cut(s)	109, 197, 210, 235, 256, 304
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	388
Eco81I	CCTNAGG	1 cut(s)	240
EcoRII	CCWGG	2 cut(s)	163, 286
EcoT38I	GRGCYC	1 cut(s)	388
FaeI	CATG	3 cut(s)	77, 141, 334
FaiI	YATR	7 cut(s)	27, 75, 87, 139, 175, 332, 407
FalI	AAGNNNNNCTT	2 cut(s)	385, 417
FatI	CATG	3 cut(s)	73, 137, 330
FauI	CCCGC	1 cut(s)	166
FbaI	TGATCA	1 cut(s)	109
FblI	GTMKAC	2 cut(s)	174, 327
FokI	GGATG	5 cut(s)	53, 131, 160, 245, 335
FriOI	GRGCYC	1 cut(s)	388
FspBI	CTAG	2 cut(s)	381, 432
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	440
HapII	CCGG	1 cut(s)	320
Hin1II	CATG	3 cut(s)	77, 141, 334
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	320
Hpy166II	GTNNAC	2 cut(s)	175, 328
Hpy188I	TCNGA	2 cut(s)	202, 261
Hpy188III	TCNNGA	2 cut(s)	217, 320
Hpy8I	GTNNAC	2 cut(s)	175, 328
HpyAV	CCTTC	2 cut(s)	117, 411
HpyCH4III	ACNGT	2 cut(s)	206, 352
HpyCH4IV	ACGT	1 cut(s)	187
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 437
HpyF3I	CTNAG	3 cut(s)	60, 240, 313
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	3 cut(s)	77, 141, 334
Kpn2I	TCCGGA	1 cut(s)	319
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	6 cut(s)	109, 197, 210, 235, 256, 304
LmnI	GCTCC	2 cut(s)	46, 322
LpnPI	CCDG	6 cut(s)	150, 177, 235, 273, 300, 333
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	2 cut(s)	381, 432
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	3 cut(s)	5, 217, 346
MalI	GATC	6 cut(s)	111, 199, 212, 237, 258, 306
MboI	GATC	6 cut(s)	109, 197, 210, 235, 256, 304
MboII	GAAGA	4 cut(s)	205, 207, 347, 408
MflI	RGATCY	3 cut(s)	197, 210, 256
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	3 cut(s)	22, 222, 342
MmeI	TCCRAC	3 cut(s)	162, 188, 225
MnlI	CCTC	8 cut(s)	31, 120, 161, 223, 247, 268, 331, 402
MroI	TCCGGA	1 cut(s)	319
MroXI	GAANNNNTTC	1 cut(s)	400
MslI	CAYNNNNRTG	1 cut(s)	117
MspI	CCGG	1 cut(s)	320
MspR9I	CCNGG	2 cut(s)	165, 288
MvaI	CCWGG	2 cut(s)	165, 288
MwoI	GCNNNNNNNGC	2 cut(s)	377, 437
NdeII	GATC	6 cut(s)	109, 197, 210, 235, 256, 304
NlaIII	CATG	3 cut(s)	77, 141, 334
NmuCI	GTSAC	2 cut(s)	5, 217
PdmI	GAANNNNTTC	1 cut(s)	400
PfeI	GAWTC	1 cut(s)	56
Psp1406I	AACGTT	1 cut(s)	187
Psp6I	CCWGG	2 cut(s)	163, 286
PspGI	CCWGG	2 cut(s)	163, 286
PsuI	RGATCY	3 cut(s)	197, 210, 256
RseI	CAYNNNNRTG	1 cut(s)	117
Sau3AI	GATC	6 cut(s)	109, 197, 210, 235, 256, 304
ScrFI	CCNGG	2 cut(s)	165, 288
SduI	GDGCHC	1 cut(s)	388
SetI	ASST	7 cut(s)	20, 131, 166, 190, 319, 403, 413
SfaNI	GCATC	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	3 cut(s)	22, 222, 342
SsiI	CCGC	1 cut(s)	159
SspI	AATATT	1 cut(s)	361
SspMI	CTAG	2 cut(s)	381, 432
StyD4I	CCNGG	2 cut(s)	163, 286
TaaI	ACNGT	2 cut(s)	206, 352
TaiI	ACGT	1 cut(s)	190
TasI	AATT	3 cut(s)	22, 222, 342
TfiI	GAWTC	1 cut(s)	56
TseFI	GTSAC	2 cut(s)	5, 217
Tsp45I	GTSAC	2 cut(s)	5, 217
TspDTI	ATGAA	1 cut(s)	371
TspGWI	ACGGA	2 cut(s)	72, 131
XmiI	GTMKAC	2 cut(s)	174, 327
XmnI	GAANNNNTTC	1 cut(s)	400
XspI	CTAG	2 cut(s)	381, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.