Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004524

Physical Location & Seq

Genomic Coordinates Forward (+)

50183569 .. 50187643

Gene Structure 4075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00202250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAAAACAAATGAGGATCAAAGTGAGGTGGAGGAGAGACCGAATGAAATACAAGAGGCTGCTGGAAATTCCAATGCGGACAAGTATGAGGAGAAAAGTGTGGCGCATGAACTGTTGAGTCCTTCTCCTTCACTTCATGCAACGGTGTACTACAACCCCGAAATCTTCGGACAAGCCGGTATCGAGGATAAATCAAATCTACTTGCTGCAACTGTTGCGTGGGCGTCGCCAAGACTGCTTTCATATTGGTGGCTTGATATTGATCACATGGATGGAAGGAGGTATTTTACATGGGATAGGATGCTTTTCCCGCACCCGGAGGAGTATGCGGCTGGAACGGTTGGTAAGGAAAACTCAAAGGATGGGAGTTTTCCCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

126

Amino Acids

14.31

Weight (kDa)

4.61

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25560 FvH4_1g25560 FvH4_1g25560
malus_domestica	MD15G1396100.v1.1 MD17G1250300.v1.1
prunus_persica	Prupe.3G148600_v2.0.a1
pyrus_communis	pycom17g25420
rosa_chinensis	RchiOBHm_Chr1g0336261 RchiOBHm_Chr2g0123721 RchiOBHm_Chr2g0123751
rosa_laevigata	RLG00000018773
rosa_multiflora	Rmu_co8452975.1_g000001 Rmu_sc0002870.1_g000009 Rmu_sc0021381.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085250 Rroxscaffold_2G00115060 Rroxscaffold_2G00120380 Rroxscaffold_3G00230560 Rroxscaffold_3G00245330 Rroxscaffold_4G00324630 Rroxscaffold_7G00170480 Rroxscaffold_7G00193250 Rroxscaffold_7G00202250 Rroxscaffold_7G00202260
rosa_rugosa	Rorug02G0247500
rosa_samantha	Rh2AG306600 Rh2BG315000 Rh2BG315100 Rh2CG293000 Rh2DG330300 Rh4DG109900
rosa_wichuraiana	Rw2G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	77, 311, 329
AclWI	GGATC	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	67
AcyI	GRCGYC	1 cut(s)	224
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	316
AjuI	GAANNNNNNNTTGG	2 cut(s)	223, 255
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	24
ApeKI	GCWGC	2 cut(s)	59, 206
ApoI	RAATTY	1 cut(s)	67
AspLEI	GCGC	1 cut(s)	106
AsuC2I	CCSGG	1 cut(s)	317
BbvI	GCAGC	2 cut(s)	46, 193
BccI	CCATC	2 cut(s)	266, 356
BclI	TGATCA	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	31
BisI	GCNGC	3 cut(s)	60, 207, 330
BlsI	GCNGC	3 cut(s)	61, 208, 331
Bme1390I	CCNGG	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	1 cut(s)	291
BplI	GAGNNNNNCTC	2 cut(s)	109, 141
BpuMI	CCSGG	1 cut(s)	317
BsaBI	GATNNNNATC	1 cut(s)	261
BsaHI	GRCGYC	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse118I	RCCGGY	1 cut(s)	176
Bse8I	GATNNNNATC	1 cut(s)	261
BseGI	GGATG	3 cut(s)	277, 306, 367
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseRI	GAGGAG	3 cut(s)	47, 104, 335
BseXI	GCAGC	2 cut(s)	46, 193
BsiSI	CCGG	2 cut(s)	177, 317
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	31
Bso31I	GGTCTC	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	16, 262
BspACI	CCGC	3 cut(s)	77, 311, 329
BspPI	GGATC	1 cut(s)	24
BspTNI	GGTCTC	1 cut(s)	31
BsrFI	RCCGGY	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	176
BssMI	GATC	2 cut(s)	16, 262
BssNI	GRCGYC	1 cut(s)	224
Bst4CI	ACNGT	4 cut(s)	114, 145, 214, 340
BstACI	GRCGYC	1 cut(s)	224
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstF5I	GGATG	3 cut(s)	277, 306, 367
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	2 cut(s)	19, 265
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	2 cut(s)	16, 262
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 235, 310
BstSCI	CCNGG	1 cut(s)	315
BstV1I	GCAGC	2 cut(s)	46, 193
BtsCI	GGATG	3 cut(s)	277, 306, 367
CfoI	GCGC	1 cut(s)	106
Cfr10I	RCCGGY	1 cut(s)	176
CseI	GACGC	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	4 cut(s)	107, 137, 268, 291
CviJI	RGCY	4 cut(s)	59, 176, 253, 332
CviKI_1	RGCY	4 cut(s)	59, 176, 253, 332
CviQI	GTAC	1 cut(s)	148
DpnI	GATC	2 cut(s)	18, 264
DpnII	GATC	2 cut(s)	16, 262
Eco31I	GGTCTC	1 cut(s)	31
FaeI	CATG	4 cut(s)	110, 140, 271, 294
FaiI	YATR	7 cut(s)	87, 108, 138, 244, 269, 292, 327
FatI	CATG	4 cut(s)	106, 136, 267, 290
FauI	CCCGC	1 cut(s)	318
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	3 cut(s)	60, 207, 330
FokI	GGATG	3 cut(s)	284, 313, 374
Fsp4HI	GCNGC	3 cut(s)	60, 207, 330
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	3 cut(s)	60, 207, 330
HapII	CCGG	2 cut(s)	177, 317
HgaI	GACGC	1 cut(s)	213
HhaI	GCGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	224
Hin1II	CATG	4 cut(s)	110, 140, 271, 294
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HinfI	GANTC	1 cut(s)	118
HpaII	CCGG	2 cut(s)	177, 317
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	1 cut(s)	374
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	1 cut(s)	229
HpyAV	CCTTC	3 cut(s)	132, 138, 270
HpyCH4III	ACNGT	4 cut(s)	114, 145, 214, 340
HpyCH4V	TGCA	2 cut(s)	140, 209
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 235, 310
Hsp92I	GRCGYC	1 cut(s)	224
Hsp92II	CATG	4 cut(s)	110, 140, 271, 294
HspAI	GCGC	1 cut(s)	104
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	16, 262
LpnPI	CCDG	4 cut(s)	48, 190, 318, 330
Lsp1109I	GCAGC	2 cut(s)	46, 193
LweI	GCATC	1 cut(s)	291
MalI	GATC	2 cut(s)	18, 264
MboI	GATC	2 cut(s)	16, 262
MboII	GAAGA	1 cut(s)	157
MluCI	AATT	1 cut(s)	67
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	8 cut(s)	7, 19, 25, 49, 82, 178, 273, 313
MslI	CAYNNNNRTG	2 cut(s)	247, 270
MspI	CCGG	2 cut(s)	177, 317
MspR9I	CCNGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	3 cut(s)	215, 235, 310
NciI	CCSGG	1 cut(s)	317
NdeII	GATC	2 cut(s)	16, 262
NlaIII	CATG	4 cut(s)	110, 140, 271, 294
PkrI	GCNGC	3 cut(s)	61, 208, 331
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
RseI	CAYNNNNRTG	2 cut(s)	247, 270
SatI	GCNGC	3 cut(s)	60, 207, 330
Sau3AI	GATC	2 cut(s)	16, 262
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	317
SetI	ASST	2 cut(s)	30, 284
SfaNI	GCATC	1 cut(s)	291
SmiMI	CAYNNNNRTG	2 cut(s)	247, 270
Sse9I	AATT	1 cut(s)	67
SsiI	CCGC	3 cut(s)	77, 311, 329
StyD4I	CCNGG	1 cut(s)	315
TaaI	ACNGT	4 cut(s)	114, 145, 214, 340
TaqI	TCGA	1 cut(s)	183
TaqII	GACCGA	1 cut(s)	55
TasI	AATT	1 cut(s)	67
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	1 cut(s)	332
TseI	GCWGC	2 cut(s)	59, 206
TspDTI	ATGAA	5 cut(s)	17, 60, 123, 125, 231
XapI	RAATTY	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.