Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8452975.1

Orthogroup ID

OG0004524

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1719

Gene Structure 1718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8452975.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1609 bp

atgctcagttccctacatacactagatctctcacaaaattcattcaataactccatacctttatctatagctcggtgcaggagactaaagagtattgtccttgctcaaaaccatttctctggttcccttccagatggtatcaccagcttggcaagtcttcaaaagctcaacatttccttcaacaggctcagcggttccatccccaagggcattagcaacttgtcgactttgagagcaactctcgacatgtctcacaacttgtttaatggttctataccagcaagcctaggaaaccttccccagagagtttatattgatctcagttacaacaatctaagtggaccaattccacagattggatctcttatcaatctaggaccaacagcttttgcaggcaatctttttctctgtggaccgccattgaagacctcatgttgttcaagcactcaagactcaaattgtcaatccttgtttcacaatccgcctcgtaattcaggtcggagcagcagctctagtacatgtgctgtggtctttgtcattgcaggtatcattattgggatttgtctttctggtctattgttctccaaatggtataagaagatctgtgcttgtaaagtcagtcgacattttgaacagacactcatgcccacgaaggactttctctacattgctaaacacggttcagattatccggagcattaccaatttgtgcaattggacctgcatgtcagtttagatcttgacaaactgctgaaagcctctgctttcttccttggtaagagtaaaactgggattgtgtataaagttgtccttgaagatggacgcaccttggcagtgagaagacttggagatgaaggttcccaaagatttaaggaatttcaaactgaaattgaagcaattggaaagatgaagcatccaaatatcaccactcttctggcatattgctggtccatagatgagaagctgctcatatatgattacattccgaacggtgaccttgctactgcaattcatggaaaagcaggcatgatatctttcacacctctttcttggcctgtacgtctcagaatcatgataggcttggcaaaaggtttggcttatattcatgaatatagtccaagaaaatatgtccacggtgacttgaggcctagcaatgtacttcttggacaaaacatggaaccccatatcaccaattttggactaggccgcctcgccaaagtaactgaagaatcctcatcctttcaacttgaacaaatcacaactgacacatcatcccttcagaattctccatatgtgcagagggctgcaagctcgatagctgcagcagcgccttgctataaagctcctgaagcctccaaagttgccaggccatcccaaaaaagcgatgtttactcatttggggtgattatgctggagatgatttctgcaaaaatgccattcagcagagtcggttctgaggaaattgatttagttgaatggttccagatcagcattgaggaaaggaagccaatcattgatgtattagaccgtttcttagctccggatgtagacatggaagaggaaattgttacagtaatgaatgttgctcttgcttgtgttgctagagccc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

536

Amino Acids

58.98

Weight (kDa)

8.59

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25560 FvH4_1g25560 FvH4_1g25560
malus_domestica	MD15G1396100.v1.1 MD17G1250300.v1.1
prunus_persica	Prupe.3G148600_v2.0.a1
pyrus_communis	pycom17g25420
rosa_chinensis	RchiOBHm_Chr1g0336261 RchiOBHm_Chr2g0123721 RchiOBHm_Chr2g0123751
rosa_laevigata	RLG00000018773
rosa_multiflora	Rmu_co8452975.1_g000001 Rmu_sc0002870.1_g000009 Rmu_sc0021381.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085250 Rroxscaffold_2G00115060 Rroxscaffold_2G00120380 Rroxscaffold_3G00230560 Rroxscaffold_3G00245330 Rroxscaffold_4G00324630 Rroxscaffold_7G00170480 Rroxscaffold_7G00193250 Rroxscaffold_7G00202250 Rroxscaffold_7G00202260
rosa_rugosa	Rorug02G0247500
rosa_samantha	Rh2AG306600 Rh2BG315000 Rh2BG315100 Rh2CG293000 Rh2DG330300 Rh4DG109900
rosa_wichuraiana	Rw2G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	725
Acc36I	ACCTGC	2 cut(s)	533, 729
AccB7I	CCANNNNNTGG	1 cut(s)	356
AccI	GTMKAC	3 cut(s)	224, 622, 1548
AccIII	TCCGGA	2 cut(s)	691, 1540
AciI	CCGC	4 cut(s)	192, 416, 482, 1207
AclWI	GGATC	1 cut(s)	367
AcsI	RAATTY	3 cut(s)	37, 875, 1282
AcuI	CTGAAG	3 cut(s)	1245, 1262, 1368
AfaI	GTAC	3 cut(s)	517, 1059, 1158
AfiI	CCNNNNNNNGG	2 cut(s)	183, 356
AflIII	ACRYGT	2 cut(s)	246, 518
AjnI	CCWGG	1 cut(s)	1364
Alw26I	GTCTC	3 cut(s)	76, 255, 1067
AlwI	GGATC	1 cut(s)	367
Aor13HI	TCCGGA	2 cut(s)	691, 1540
AoxI	GGCC	4 cut(s)	1052, 1145, 1204, 1367
ApeKI	GCWGC	7 cut(s)	504, 507, 964, 1304, 1319, 1322, 1325
ApoI	RAATTY	3 cut(s)	37, 875, 1282
AspA2I	CCTAGG	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	1330
AspS9I	GGNCC	5 cut(s)	341, 377, 413, 718, 948
AsuHPI	GGTGA	6 cut(s)	133, 916, 1004, 1148, 1180, 1414
AvaII	GGWCC	5 cut(s)	341, 377, 413, 718, 948
AvrII	CCTAGG	1 cut(s)	286
BanII	GRGCYC	1 cut(s)	1609
BbsI	GAAGAC	3 cut(s)	149, 431, 847
BbvI	GCAGC	7 cut(s)	516, 519, 951, 1291, 1306, 1334, 1337
BccI	CCATC	4 cut(s)	128, 206, 812, 1378
BciT130I	CCWGG	1 cut(s)	1366
BcoDI	GTCTC	3 cut(s)	76, 255, 1067
BfaI	CTAG	7 cut(s)	23, 287, 374, 513, 1149, 1202, 1602
BfmI	CTRYAG	2 cut(s)	66, 1320
BfoI	RGCGCY	1 cut(s)	1331
BfuAI	ACCTGC	2 cut(s)	533, 729
BglII	AGATCT	3 cut(s)	25, 600, 736
BisI	GCNGC	8 cut(s)	505, 508, 965, 1207, 1305, 1320, 1323, 1326
BlnI	CCTAGG	1 cut(s)	286
BlpI	GCTNAGC	1 cut(s)	188
BlsI	GCNGC	8 cut(s)	506, 509, 966, 1208, 1306, 1321, 1324, 1327
Bme1390I	CCNGG	1 cut(s)	1366
Bme18I	GGWCC	5 cut(s)	341, 377, 413, 718, 948
BmgT120I	GGNCC	5 cut(s)	341, 377, 413, 718, 948
BmiI	GGNNCC	5 cut(s)	124, 196, 859, 1179, 1481
BmrFI	CCNGG	1 cut(s)	1366
BmrI	ACTGGG	1 cut(s)	798
BmsI	GCATC	1 cut(s)	922
BmuI	ACTGGG	1 cut(s)	798
BpiI	GAAGAC	3 cut(s)	149, 431, 847
BplI	GAGNNNNNCTC	4 cut(s)	223, 255, 225, 257
BpmI	CTGGAG	1 cut(s)	1433
Bpu1102I	GCTNAGC	1 cut(s)	188
BpuEI	CTTGAG	2 cut(s)	432, 1162
BsaJI	CCNNGG	5 cut(s)	204, 286, 772, 828, 1132
BsaWI	WCCGGW	2 cut(s)	691, 1540
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 356
Bse1I	ACTGG	1 cut(s)	793
Bse3DI	GCAATG	3 cut(s)	537, 666, 1159
BseAI	TCCGGA	2 cut(s)	691, 1540
BseBI	CCWGG	1 cut(s)	1366
BseDI	CCNNGG	5 cut(s)	204, 286, 772, 828, 1132
BseGI	GGATG	6 cut(s)	198, 913, 1235, 1271, 1370, 1549
BseLI	CCNNNNNNNGG	2 cut(s)	183, 356
BseMI	GCAATG	3 cut(s)	537, 666, 1159
BseMII	CTCAG	5 cut(s)	19, 202, 334, 1078, 1446
BseNI	ACTGG	1 cut(s)	793
BseXI	GCAGC	7 cut(s)	516, 519, 951, 1291, 1306, 1334, 1337
BsgI	GTGCAG	2 cut(s)	97, 1316
BshFI	GGCC	4 cut(s)	1054, 1147, 1206, 1369
BsiSI	CCGG	2 cut(s)	692, 1541
BslI	CCNNNNNNNGG	2 cut(s)	183, 356
BsmAI	GTCTC	3 cut(s)	76, 255, 1067
BsmBI	CGTCTC	1 cut(s)	1067
BsnI	GGCC	4 cut(s)	1054, 1147, 1206, 1369
Bsp1286I	GDGCHC	1 cut(s)	1609
Bsp13I	TCCGGA	2 cut(s)	691, 1540
Bsp143I	GATC	6 cut(s)	25, 316, 359, 600, 736, 1485
Bsp1720I	GCTNAGC	1 cut(s)	188
BspACI	CCGC	4 cut(s)	192, 416, 482, 1207
BspANI	GGCC	4 cut(s)	1054, 1147, 1206, 1369
BspCNI	CTCAG	5 cut(s)	18, 201, 333, 1077, 1447
BspEI	TCCGGA	2 cut(s)	691, 1540
BspHI	TCATGA	2 cut(s)	1071, 1105
BspLI	GGNNCC	5 cut(s)	124, 196, 859, 1179, 1481
BspMAI	CTGCAG	1 cut(s)	1324
BspMI	ACCTGC	2 cut(s)	533, 729
BspPI	GGATC	1 cut(s)	367
BsrDI	GCAATG	3 cut(s)	537, 666, 1159
BsrI	ACTGG	1 cut(s)	793
BssECI	CCNNGG	5 cut(s)	204, 286, 772, 828, 1132
BssMI	GATC	6 cut(s)	25, 316, 359, 600, 736, 1485
BssT1I	CCWWGG	4 cut(s)	204, 286, 772, 828
Bst2UI	CCWGG	1 cut(s)	1366
Bst4CI	ACNGT	5 cut(s)	680, 992, 1136, 1529, 1573
Bst6I	CTCTTC	2 cut(s)	936, 1551
BstC8I	GCNNGC	4 cut(s)	283, 394, 1024, 1309
BstDEI	CTNAG	7 cut(s)	5, 188, 320, 335, 1064, 1455, 1534
BstDSI	CCRYGG	1 cut(s)	1132
BstEII	GGTNACC	1 cut(s)	992
BstENI	CCTNNNNNAGG	1 cut(s)	181
BstF5I	GGATG	6 cut(s)	198, 913, 1235, 1271, 1370, 1549
BstH2I	RGCGCY	1 cut(s)	1331
BstHHI	GCGC	1 cut(s)	1330
BstKTI	GATC	6 cut(s)	28, 319, 362, 603, 739, 1488
BstMAI	GTCTC	3 cut(s)	76, 255, 1067
BstMBI	GATC	6 cut(s)	25, 316, 359, 600, 736, 1485
BstMWI	GCNNNNNNNGC	3 cut(s)	1325, 1349, 1598
BstNI	CCWGG	1 cut(s)	1366
BstNSI	RCATGY	3 cut(s)	250, 522, 728
BstPI	GGTNACC	1 cut(s)	992
BstSCI	CCNGG	1 cut(s)	1364
BstSFI	CTRYAG	2 cut(s)	66, 1320
BstV1I	GCAGC	7 cut(s)	516, 519, 951, 1291, 1306, 1334, 1337
BstV2I	GAAGAC	3 cut(s)	149, 431, 847
BstX2I	RGATCY	4 cut(s)	25, 359, 600, 736
BstXI	CCANNNNNNTGG	2 cut(s)	119, 934
BstYI	RGATCY	4 cut(s)	25, 359, 600, 736
BsuRI	GGCC	4 cut(s)	1054, 1147, 1206, 1369
BtgI	CCRYGG	1 cut(s)	1132
BtgZI	GCGATG	1 cut(s)	1398
BtsCI	GGATG	6 cut(s)	198, 913, 1235, 1271, 1370, 1549
BtsI	GCAGTG	1 cut(s)	840
BtsIMutI	CAGTG	1 cut(s)	840
BveI	ACCTGC	2 cut(s)	533, 729
Cac8I	GCNNGC	4 cut(s)	283, 394, 1024, 1309
CciI	TCATGA	2 cut(s)	1071, 1105
CfoI	GCGC	1 cut(s)	1330
Cfr13I	GGNCC	5 cut(s)	341, 377, 413, 718, 948
CseI	GACGC	1 cut(s)	831
Csp6I	GTAC	3 cut(s)	516, 1058, 1157
CspCI	CAANNNNNGTGG	2 cut(s)	319, 354
CviQI	GTAC	3 cut(s)	516, 1058, 1157
DdeI	CTNAG	7 cut(s)	5, 188, 320, 335, 1064, 1455, 1534
DpnI	GATC	6 cut(s)	27, 318, 361, 602, 738, 1487
DpnII	GATC	6 cut(s)	25, 316, 359, 600, 736, 1485
DrdI	GACNNNNNNGTC	1 cut(s)	725
DseDI	GACNNNNNNGTC	1 cut(s)	725
Eam1104I	CTCTTC	2 cut(s)	936, 1551
EarI	CTCTTC	2 cut(s)	936, 1551
EciI	GGCGGA	1 cut(s)	471
Eco130I	CCWWGG	4 cut(s)	204, 286, 772, 828
Eco147I	AGGCCT	1 cut(s)	1147
Eco24I	GRGCYC	1 cut(s)	1609
Eco32I	GATATC	1 cut(s)	1032
Eco47I	GGWCC	5 cut(s)	341, 377, 413, 718, 948
Eco57I	CTGAAG	3 cut(s)	1245, 1262, 1368
Eco91I	GGTNACC	1 cut(s)	992
EcoNI	CCTNNNNNAGG	1 cut(s)	181
EcoO65I	GGTNACC	1 cut(s)	992
EcoRI	GAATTC	1 cut(s)	1282
EcoRII	CCWGG	1 cut(s)	1364
EcoRV	GATATC	1 cut(s)	1032
EcoT14I	CCWWGG	4 cut(s)	204, 286, 772, 828
EcoT38I	GRGCYC	1 cut(s)	1609
ErhI	CCWWGG	4 cut(s)	204, 286, 772, 828
Esp3I	CGTCTC	1 cut(s)	1067
FalI	AAGNNNNNCTT	2 cut(s)	795, 827
FauNDI	CATATG	1 cut(s)	1291
FblI	GTMKAC	3 cut(s)	224, 622, 1548
Fnu4HI	GCNGC	8 cut(s)	505, 508, 965, 1207, 1305, 1320, 1323, 1326
FokI	GGATG	6 cut(s)	185, 900, 1222, 1258, 1357, 1556
FriOI	GRGCYC	1 cut(s)	1609
Fsp4HI	GCNGC	8 cut(s)	505, 508, 965, 1207, 1305, 1320, 1323, 1326
FspBI	CTAG	7 cut(s)	23, 287, 374, 513, 1149, 1202, 1602
GlaI	GCGC	1 cut(s)	1329
GluI	GCNGC	8 cut(s)	505, 508, 965, 1207, 1305, 1320, 1323, 1326
GsuI	CTGGAG	1 cut(s)	1433
HaeII	RGCGCY	1 cut(s)	1331
HaeIII	GGCC	4 cut(s)	1054, 1147, 1206, 1369
HapII	CCGG	2 cut(s)	692, 1541
HgaI	GACGC	1 cut(s)	831
HhaI	GCGC	1 cut(s)	1330
Hin6I	GCGC	1 cut(s)	1328
HinP1I	GCGC	1 cut(s)	1328
HincII	GTYRAC	2 cut(s)	225, 623
HindII	GTYRAC	2 cut(s)	225, 623
HinfI	GANTC	4 cut(s)	452, 1068, 1229, 1446
HpaII	CCGG	2 cut(s)	692, 1541
HphI	GGTGA	6 cut(s)	133, 916, 1004, 1148, 1180, 1414
Hpy166II	GTNNAC	7 cut(s)	225, 341, 413, 623, 1132, 1390, 1549
Hpy188I	TCNGA	6 cut(s)	501, 685, 987, 1067, 1281, 1456
Hpy8I	GTNNAC	7 cut(s)	225, 341, 413, 623, 1132, 1390, 1549
HpyAV	CCTTC	6 cut(s)	137, 187, 305, 646, 848, 1286
HpyCH4III	ACNGT	5 cut(s)	680, 992, 1136, 1529, 1573
HpyCH4IV	ACGT	1 cut(s)	1060
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1325, 1349, 1598
HpyF3I	CTNAG	7 cut(s)	5, 188, 320, 335, 1064, 1455, 1534
HpySE526I	ACGT	1 cut(s)	1060
HspAI	GCGC	1 cut(s)	1328
Kpn2I	TCCGGA	2 cut(s)	691, 1540
Kzo9I	GATC	6 cut(s)	25, 316, 359, 600, 736, 1485
LmnI	GCTCC	4 cut(s)	501, 694, 1348, 1543
Lsp1109I	GCAGC	7 cut(s)	516, 519, 951, 1291, 1306, 1334, 1337
LweI	GCATC	1 cut(s)	922
MaeI	CTAG	7 cut(s)	23, 287, 374, 513, 1149, 1202, 1602
MaeII	ACGT	1 cut(s)	1060
MaeIII	GTNAC	5 cut(s)	323, 992, 1136, 1219, 1567
MalI	GATC	6 cut(s)	27, 318, 361, 602, 738, 1487
MboI	GATC	6 cut(s)	25, 316, 359, 600, 736, 1485
MboII	GAAGA	9 cut(s)	149, 436, 610, 760, 827, 852, 923, 1238, 1568
MfeI	CAATTG	2 cut(s)	713, 897
MflI	RGATCY	4 cut(s)	25, 359, 600, 736
MhlI	GDGCHC	1 cut(s)	1609
MlyI	GAGTC	2 cut(s)	446, 1455
MmeI	TCCRAC	1 cut(s)	479
MroI	TCCGGA	2 cut(s)	691, 1540
MseI	TTAA	2 cut(s)	264, 870
MspA1I	CMGCKG	1 cut(s)	192
MspI	CCGG	2 cut(s)	692, 1541
MspR9I	CCNGG	1 cut(s)	1366
MunI	CAATTG	2 cut(s)	713, 897
MvaI	CCWGG	1 cut(s)	1366
MwoI	GCNNNNNNNGC	3 cut(s)	1325, 1349, 1598
NdeI	CATATG	1 cut(s)	1291
NdeII	GATC	6 cut(s)	25, 316, 359, 600, 736, 1485
NlaIV	GGNNCC	5 cut(s)	124, 196, 859, 1179, 1481
NmuCI	GTSAC	2 cut(s)	992, 1136
NspI	RCATGY	3 cut(s)	250, 522, 728
PagI	TCATGA	2 cut(s)	1071, 1105
PceI	AGGCCT	1 cut(s)	1147
PciI	ACATGT	2 cut(s)	246, 518
PfeI	GAWTC	2 cut(s)	1068, 1229
PflMI	CCANNNNNTGG	1 cut(s)	356
PkrI	GCNGC	8 cut(s)	506, 509, 966, 1208, 1306, 1321, 1324, 1327
PleI	GAGTC	2 cut(s)	446, 1454
PpsI	GAGTC	2 cut(s)	446, 1454
PscI	ACATGT	2 cut(s)	246, 518
Psp6I	CCWGG	1 cut(s)	1364
PspEI	GGTNACC	1 cut(s)	992
PspGI	CCWGG	1 cut(s)	1364
PspN4I	GGNNCC	5 cut(s)	124, 196, 859, 1179, 1481
PspPI	GGNCC	5 cut(s)	341, 377, 413, 718, 948
PstI	CTGCAG	1 cut(s)	1324
PsuI	RGATCY	4 cut(s)	25, 359, 600, 736
RsaI	GTAC	3 cut(s)	517, 1059, 1158
RsaNI	GTAC	3 cut(s)	516, 1058, 1157
SalI	GTCGAC	2 cut(s)	223, 621
SaqAI	TTAA	2 cut(s)	264, 870
SatI	GCNGC	8 cut(s)	505, 508, 965, 1207, 1305, 1320, 1323, 1326
Sau3AI	GATC	6 cut(s)	25, 316, 359, 600, 736, 1485
Sau96I	GGNCC	5 cut(s)	341, 377, 413, 718, 948
SchI	GAGTC	2 cut(s)	446, 1455
ScrFI	CCNGG	1 cut(s)	1366
SduI	GDGCHC	1 cut(s)	1609
SfaNI	GCATC	1 cut(s)	922
SfcI	CTRYAG	2 cut(s)	66, 1320
SinI	GGWCC	5 cut(s)	341, 377, 413, 718, 948
SmlI	CTYRAG	2 cut(s)	447, 1141
SmoI	CTYRAG	2 cut(s)	447, 1141
SseBI	AGGCCT	1 cut(s)	1147
SsiI	CCGC	4 cut(s)	192, 416, 482, 1207
SspMI	CTAG	7 cut(s)	23, 287, 374, 513, 1149, 1202, 1602
StuI	AGGCCT	1 cut(s)	1147
StyD4I	CCNGG	1 cut(s)	1364
StyI	CCWWGG	4 cut(s)	204, 286, 772, 828
TaaI	ACNGT	5 cut(s)	680, 992, 1136, 1529, 1573
TaiI	ACGT	1 cut(s)	1063
TaqI	TCGA	4 cut(s)	224, 243, 622, 1313
TatI	WGTACW	2 cut(s)	515, 1156
TauI	GCSGC	1 cut(s)	1209
TfiI	GAWTC	2 cut(s)	1068, 1229
Tru1I	TTAA	2 cut(s)	264, 870
Tru9I	TTAA	2 cut(s)	264, 870
TscAI	CASTG	1 cut(s)	840
TseFI	GTSAC	2 cut(s)	992, 1136
TseI	GCWGC	7 cut(s)	504, 507, 964, 1304, 1319, 1322, 1325
Tsp45I	GTSAC	2 cut(s)	992, 1136
TspDTI	ATGAA	7 cut(s)	30, 867, 923, 1001, 1094, 1122, 1592
TspRI	CASTG	1 cut(s)	840
Van91I	CCANNNNNTGG	1 cut(s)	356
VpaK11BI	GGWCC	5 cut(s)	341, 377, 413, 718, 948
XagI	CCTNNNNNAGG	1 cut(s)	181
XapI	RAATTY	3 cut(s)	37, 875, 1282
XceI	RCATGY	3 cut(s)	250, 522, 728
XmaJI	CCTAGG	1 cut(s)	286
XmiI	GTMKAC	3 cut(s)	224, 622, 1548
XspI	CTAG	7 cut(s)	23, 287, 374, 513, 1149, 1202, 1602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.