Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004524

Physical Location & Seq

Genomic Coordinates Forward (+)

34682551 .. 34683340

Gene Structure 790 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00193250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGGCGTTGTGGAAGCGGGAGCTGCGGTGGCAGGCGATTCTCTGAGCATGAGAGCAGCGATGATGAGGGAGTCACCGCAAAAGAGCCAAACAATCACCGACGACGACGACGACGATTGGAACTTCGGCGCGGAAGAGCTTGATTCCCTCGAAAGACATGCTTTCCGAAACTCTCTCGCAGCGCATCAACTCCGCTTCCACTTGTTCCTGTTATGGATGTTCCCCGTGTCTTCTTTGTCATCGGCAGAAAAAGTTCTTCATGAAGTTTCAGCAGTCAATGTTGAGATAGAGAACTTAGATCCCTTAGTCCACTGGGCCATTGTCGCTGAATTGCAGATTGATGTTCTTGGGGATGGATTGGATACCGAGGCCGACATTGCTCTCCCTTCGTCTCGGGGTAGGATTGACACGTTTTGGATGAGTGAGGCCGGTATTGTGGATGCTTTCTTTTCGTGGGACCGGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000228 GO:0000733 GO:0003674 GO:0003676 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0031297 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031593 GO:0031974 GO:0031981 GO:0032392 GO:0033554 GO:0034641 GO:0034645 GO:0036292 GO:0036310 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045005 GO:0045910 GO:0045934 GO:0046483 GO:0048478 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070530 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090329 GO:0097159 GO:0097617 GO:0140030 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

155

Amino Acids

17.15

Weight (kDa)

4.29

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25560 FvH4_1g25560 FvH4_1g25560
malus_domestica	MD15G1396100.v1.1 MD17G1250300.v1.1
prunus_persica	Prupe.3G148600_v2.0.a1
pyrus_communis	pycom17g25420
rosa_chinensis	RchiOBHm_Chr1g0336261 RchiOBHm_Chr2g0123721 RchiOBHm_Chr2g0123751
rosa_laevigata	RLG00000018773
rosa_multiflora	Rmu_co8452975.1_g000001 Rmu_sc0002870.1_g000009 Rmu_sc0021381.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085250 Rroxscaffold_2G00115060 Rroxscaffold_2G00120380 Rroxscaffold_3G00230560 Rroxscaffold_3G00245330 Rroxscaffold_4G00324630 Rroxscaffold_7G00170480 Rroxscaffold_7G00193250 Rroxscaffold_7G00202250 Rroxscaffold_7G00202260
rosa_rugosa	Rorug02G0247500
rosa_samantha	Rh2AG306600 Rh2BG315000 Rh2BG315100 Rh2CG293000 Rh2DG330300 Rh4DG109900
rosa_wichuraiana	Rw2G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	131
AciI	CCGC	5 cut(s)	17, 26, 77, 131, 193
AclWI	GGATC	1 cut(s)	293
AflIII	ACRYGT	1 cut(s)	408
AluBI	AGCT	2 cut(s)	23, 139
AluI	AGCT	2 cut(s)	23, 139
Alw26I	GTCTC	1 cut(s)	396
AlwI	GGATC	1 cut(s)	293
Ama87I	CYCGRG	1 cut(s)	393
AoxI	GGCC	3 cut(s)	315, 369, 426
ApeKI	GCWGC	3 cut(s)	23, 56, 179
Asp700I	GAANNNNTTC	1 cut(s)	252
AspLEI	GCGC	2 cut(s)	131, 184
AspS9I	GGNCC	2 cut(s)	315, 457
AsuC2I	CCSGG	1 cut(s)	461
AsuHPI	GGTGA	2 cut(s)	66, 88
AvaI	CYCGRG	1 cut(s)	393
AvaII	GGWCC	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	222
BbvI	GCAGC	3 cut(s)	10, 68, 191
BccI	CCATC	1 cut(s)	347
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciVI	GTATCC	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	461
BcoDI	GTCTC	1 cut(s)	396
BfuI	GTATCC	1 cut(s)	355
BisI	GCNGC	3 cut(s)	24, 57, 180
BlsI	GCNGC	3 cut(s)	25, 58, 181
Bme1390I	CCNGG	1 cut(s)	461
Bme18I	GGWCC	1 cut(s)	457
BmeT110I	CYCGRG	1 cut(s)	393
BmgT120I	GGNCC	2 cut(s)	315, 457
BmiI	GGNNCC	1 cut(s)	458
BmrFI	CCNGG	1 cut(s)	461
BmrI	ACTGGG	1 cut(s)	322
BmsI	GCATC	2 cut(s)	193, 430
BmuI	ACTGGG	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	461
BsaJI	CCNNGG	2 cut(s)	366, 460
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	1 cut(s)	317
Bse3DI	GCAATG	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	366, 460
BseGI	GGATG	4 cut(s)	222, 358, 423, 445
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	1 cut(s)	317
BseXI	GCAGC	3 cut(s)	10, 68, 191
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	3 cut(s)	317, 371, 428
BsiHKCI	CYCGRG	1 cut(s)	393
BsiSI	CCGG	2 cut(s)	429, 460
BsmAI	GTCTC	1 cut(s)	396
BsmBI	CGTCTC	1 cut(s)	396
BsnI	GGCC	3 cut(s)	317, 371, 428
BsoBI	CYCGRG	1 cut(s)	393
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	5 cut(s)	17, 26, 77, 131, 193
BspANI	GGCC	3 cut(s)	317, 371, 428
BspCNI	CTCAG	1 cut(s)	36
BspFNI	CGCG	1 cut(s)	131
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	458
BspPI	GGATC	1 cut(s)	293
BspQI	GCTCTTC	1 cut(s)	129
BsrDI	GCAATG	1 cut(s)	375
BsrFI	RCCGGY	1 cut(s)	428
BsrI	ACTGG	1 cut(s)	317
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	2 cut(s)	366, 460
BssMI	GATC	1 cut(s)	298
Bst6I	CTCTTC	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	3 cut(s)	44, 295, 304
BstF5I	GGATG	4 cut(s)	222, 358, 423, 445
BstFNI	CGCG	1 cut(s)	131
BstHHI	GCGC	2 cut(s)	131, 184
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 29, 323, 377
BstNSI	RCATGY	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	459
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	3 cut(s)	10, 68, 191
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuI	GTATCC	1 cut(s)	355
BsuRI	GGCC	3 cut(s)	317, 371, 428
BtgZI	GCGATG	1 cut(s)	74
BtsCI	GGATG	4 cut(s)	222, 358, 423, 445
BtsIMutI	CAGTG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	34
CciI	TCATGA	1 cut(s)	259
CfoI	GCGC	2 cut(s)	131, 184
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	2 cut(s)	315, 457
CviAII	CATG	3 cut(s)	49, 158, 260
CviJI	RGCY	7 cut(s)	23, 87, 139, 317, 371, 428, 465
CviKI_1	RGCY	7 cut(s)	23, 87, 139, 317, 371, 428, 465
DdeI	CTNAG	3 cut(s)	44, 295, 304
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	457
Eco88I	CYCGRG	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	396
FaeI	CATG	3 cut(s)	52, 161, 263
FaiI	YATR	4 cut(s)	50, 159, 214, 261
FalI	AAGNNNNNCTT	2 cut(s)	145, 177
FatI	CATG	3 cut(s)	48, 157, 259
FauI	CCCGC	1 cut(s)	10
Fnu4HI	GCNGC	3 cut(s)	24, 57, 180
FokI	GGATG	4 cut(s)	229, 365, 430, 452
Fsp4HI	GCNGC	3 cut(s)	24, 57, 180
GlaI	GCGC	2 cut(s)	130, 183
GluI	GCNGC	3 cut(s)	24, 57, 180
HaeIII	GGCC	3 cut(s)	317, 371, 428
HapII	CCGG	2 cut(s)	429, 460
HhaI	GCGC	2 cut(s)	131, 184
Hin1II	CATG	3 cut(s)	52, 161, 263
Hin6I	GCGC	2 cut(s)	129, 182
HinP1I	GCGC	2 cut(s)	129, 182
HinfI	GANTC	3 cut(s)	38, 71, 143
HpaII	CCGG	2 cut(s)	429, 460
HphI	GGTGA	2 cut(s)	66, 88
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	2 cut(s)	45, 167
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	1 cut(s)	310
Hpy99I	CGWCG	5 cut(s)	104, 107, 110, 113, 116
HpyAV	CCTTC	1 cut(s)	396
HpyCH4IV	ACGT	1 cut(s)	410
HpyCH4V	TGCA	1 cut(s)	334
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 29, 323, 377
HpyF3I	CTNAG	3 cut(s)	44, 295, 304
HpySE526I	ACGT	1 cut(s)	410
Hsp92II	CATG	3 cut(s)	52, 161, 263
HspAI	GCGC	2 cut(s)	129, 182
Kzo9I	GATC	1 cut(s)	298
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	4 cut(s)	18, 221, 298, 442
Lsp1109I	GCAGC	3 cut(s)	10, 68, 191
LweI	GCATC	2 cut(s)	193, 430
MaeII	ACGT	1 cut(s)	410
MaeIII	GTNAC	1 cut(s)	72
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	3 cut(s)	146, 222, 248
MflI	RGATCY	1 cut(s)	298
MluCI	AATT	1 cut(s)	329
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	4 cut(s)	60, 158, 361, 418
MroXI	GAANNNNTTC	1 cut(s)	252
MspI	CCGG	2 cut(s)	429, 460
MspR9I	CCNGG	1 cut(s)	461
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	4 cut(s)	23, 29, 323, 377
NciI	CCSGG	1 cut(s)	461
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	52, 161, 263
NlaIV	GGNNCC	1 cut(s)	458
NmuCI	GTSAC	1 cut(s)	72
NspI	RCATGY	1 cut(s)	161
PagI	TCATGA	1 cut(s)	259
PciSI	GCTCTTC	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 111
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	38, 143
PkrI	GCNGC	3 cut(s)	25, 58, 181
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	458
PspPI	GGNCC	2 cut(s)	315, 457
PsuI	RGATCY	1 cut(s)	298
SapI	GCTCTTC	1 cut(s)	129
SatI	GCNGC	3 cut(s)	24, 57, 180
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	2 cut(s)	315, 457
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	461
SetI	ASST	3 cut(s)	25, 141, 413
SfaNI	GCATC	2 cut(s)	193, 430
SinI	GGWCC	1 cut(s)	457
Sse9I	AATT	1 cut(s)	329
SsiI	CCGC	5 cut(s)	17, 26, 77, 131, 193
StyD4I	CCNGG	1 cut(s)	459
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	1 cut(s)	150
TasI	AATT	1 cut(s)	329
TfiI	GAWTC	2 cut(s)	38, 143
TscAI	CASTG	1 cut(s)	317
TseFI	GTSAC	1 cut(s)	72
TseI	GCWGC	3 cut(s)	23, 56, 179
Tsp45I	GTSAC	1 cut(s)	72
TspDTI	ATGAA	2 cut(s)	248, 276
TspRI	CASTG	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	457
XceI	RCATGY	1 cut(s)	161
XmnI	GAANNNNTTC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.