Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004524

Physical Location & Seq

Genomic Coordinates Forward (+)

41210312 .. 41211256

Gene Structure 945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00115060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGATCATGTCGCCAATTAGGCAAAGGCCACCGACAGTTCTCAAAGGAAATATTCCTTTGGTTCCCACCTTGCCTTTGTTCGAACGAGGAGCAGGAAGGAGAAGGAAGACGACCGGGGGGGGGGGTTTCCGGTTGTGTGTGGGAAGAAGAAGCAGCCTTGATGCCCACTCCTCCTCCATTAACGTCGTCATCAAGGATGGCAGCCTCAAACCCATCCAAGTCTCCGATGACGACCACGAGTCGGATGTGAGGACTTGCCGATACGGCGTCGGAATTGTCTTAGTTGAAGACCCGCAGTCCGGTTCGGCAATGCCGTTCAAGTCCCTCCCCGCCTCTCACTCCCGACCGGGCGTTGGTAGGCGCTTTTCGCAAGATCCCCAAAGCCGCAGGAATGCAAAAGAAAGGTTATGGATGTTCCCCGTGTCTTCTTTGTCATCGGCAGAAAAAGTTCTTCATGAAGTTTCAGCAGTCAATGTTGAGATAGAGAACTTAGATCCCTTAGTCCACCGGCCACCGCTGCTAAATTGCAGATTGATGTTCTTGGGGATGGAGGGGATGCGAGGCCGACATTGCTCTCCCTTCGTCTCGGGTAGGATTGACACGTTTTGGTTGAGTGAGGCCGGTATTGTGGATGCTTTCTTTTTCGTGGGACCGGGGCCAAAGGATGTAGTGCGTCGGTATGCGAGTGTGGTTGGCACGCCCGCAATGCCGCAGTTGTTTGCGGTGACGTATCACCAATGTAGATGGAATTATAGAAATAAAGAGGATGTGGAGCAAGTTGATTCTAAGTTTGATGAGCATGATATTCCGTATGATGTTTTGTGGCTTGATATTGATCACACGGATGGAAGGAGGTGTTTTACATGGGGTAGGATGCTTTTCCCCGCACCGAGGAGTATGTCTTTGTTGGAACGTTTGGGTAAGCTTCGTACCCTTTCGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000902 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005975 GO:0005976 GO:0006073 GO:0006464 GO:0006491 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009250 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0015926 GO:0016043 GO:0016049 GO:0016051 GO:0016787 GO:0016798 GO:0019538 GO:0030243 GO:0030244 GO:0030587 GO:0031288 GO:0032502 GO:0032989 GO:0033692 GO:0033919 GO:0034637 GO:0034645 GO:0036211 GO:0040007 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043687 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0051274 GO:0051703 GO:0051704 GO:0051707 GO:0060560 GO:0071704 GO:0071840 GO:0090599 GO:0090600 GO:0090702 GO:0098542 GO:0099120 GO:1901135 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04141 map00510 map01100 map04141

Pfam Domains

Protein Families

DUF5110 Gal_mutarotas_2 Glyco_hydro_31

Protein Analysis

314

Amino Acids

35.31

Weight (kDa)

9.45

Isoelectric Point (pI)

61.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_31_2nd	PF01055	234 - 300	4.3e-20	Glycosyl hydrolases family 31 TIM-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25560 FvH4_1g25560 FvH4_1g25560
malus_domestica	MD15G1396100.v1.1 MD17G1250300.v1.1
prunus_persica	Prupe.3G148600_v2.0.a1
pyrus_communis	pycom17g25420
rosa_chinensis	RchiOBHm_Chr1g0336261 RchiOBHm_Chr2g0123721 RchiOBHm_Chr2g0123751
rosa_laevigata	RLG00000018773
rosa_multiflora	Rmu_co8452975.1_g000001 Rmu_sc0002870.1_g000009 Rmu_sc0021381.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085250 Rroxscaffold_2G00115060 Rroxscaffold_2G00120380 Rroxscaffold_3G00230560 Rroxscaffold_3G00245330 Rroxscaffold_4G00324630 Rroxscaffold_7G00170480 Rroxscaffold_7G00193250 Rroxscaffold_7G00202250 Rroxscaffold_7G00202260
rosa_rugosa	Rorug02G0247500
rosa_samantha	Rh2AG306600 Rh2BG315000 Rh2BG315100 Rh2CG293000 Rh2DG330300 Rh4DG109900
rosa_wichuraiana	Rw2G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	293, 330, 385, 515, 702, 710, 722, 885
AclI	AACGTT	1 cut(s)	913
AclWI	GGATC	2 cut(s)	368, 488
AcoI	YGGCCR	1 cut(s)	509
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	1 cut(s)	931
AfiI	CCNNNNNNNGG	5 cut(s)	120, 241, 299, 353, 891
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	2 cut(s)	287, 319
AhdI	GACNNNNNGTC	2 cut(s)	238, 295
AluBI	AGCT	1 cut(s)	925
AluI	AGCT	1 cut(s)	925
Alw26I	GTCTC	2 cut(s)	226, 589
AlwI	GGATC	2 cut(s)	368, 488
Ama87I	CYCGRG	1 cut(s)	586
AoxI	GGCC	5 cut(s)	26, 509, 562, 618, 656
ApeKI	GCWGC	3 cut(s)	153, 201, 517
Asp700I	GAANNNNTTC	1 cut(s)	447
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	2 cut(s)	650, 656
AsuC2I	CCSGG	3 cut(s)	115, 348, 654
AsuHPI	GGTGA	2 cut(s)	725, 736
AsuII	TTCGAA	1 cut(s)	81
AvaI	CYCGRG	1 cut(s)	586
AvaII	GGWCC	1 cut(s)	650
BauI	CACGAG	1 cut(s)	236
BbsI	GAAGAC	3 cut(s)	113, 294, 417
BbvI	GCAGC	3 cut(s)	165, 213, 504
BccI	CCATC	5 cut(s)	191, 221, 541, 738, 839
BceAI	ACGGC	2 cut(s)	280, 298
BclI	TGATCA	2 cut(s)	3, 835
BcnI	CCSGG	3 cut(s)	115, 348, 654
BcoDI	GTCTC	2 cut(s)	226, 589
BfoI	RGCGCY	1 cut(s)	364
BglI	GCCNNNNNGGC	2 cut(s)	19, 264
BisI	GCNGC	5 cut(s)	154, 202, 385, 518, 710
BlsI	GCNGC	5 cut(s)	155, 203, 386, 519, 711
Bme1390I	CCNGG	3 cut(s)	115, 348, 654
Bme18I	GGWCC	1 cut(s)	650
BmeRI	GACNNNNNGTC	2 cut(s)	238, 295
BmeT110I	CYCGRG	1 cut(s)	586
BmgT120I	GGNCC	2 cut(s)	650, 656
BmiI	GGNNCC	3 cut(s)	63, 651, 657
BmrFI	CCNGG	3 cut(s)	115, 348, 654
BmsI	GCATC	4 cut(s)	151, 546, 622, 864
BpiI	GAAGAC	3 cut(s)	113, 294, 417
Bpu14I	TTCGAA	1 cut(s)	81
BpuMI	CCSGG	3 cut(s)	115, 348, 654
BsaBI	GATNNNNATC	1 cut(s)	834
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	3 cut(s)	114, 653, 890
BsaWI	WCCGGW	2 cut(s)	129, 299
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	5 cut(s)	120, 241, 299, 353, 891
Bse118I	RCCGGY	2 cut(s)	507, 620
Bse3DI	GCAATG	3 cut(s)	315, 568, 711
Bse8I	GATNNNNATC	1 cut(s)	834
BseDI	CCNNGG	3 cut(s)	114, 653, 890
BseJI	GATNNNNATC	1 cut(s)	834
BseLI	CCNNNNNNNGG	5 cut(s)	120, 241, 299, 353, 891
BseMI	GCAATG	3 cut(s)	315, 568, 711
BseRI	GAGGAG	4 cut(s)	102, 160, 163, 907
BseXI	GCAGC	3 cut(s)	165, 213, 504
Bsh1285I	CGRYCG	2 cut(s)	114, 347
BshFI	GGCC	5 cut(s)	28, 511, 564, 620, 658
BsiEI	CGRYCG	2 cut(s)	114, 347
BsiHKCI	CYCGRG	1 cut(s)	586
BsiSI	CCGG	7 cut(s)	114, 130, 300, 347, 508, 621, 653
BslFI	GGGAC	2 cut(s)	307, 663
BslI	CCNNNNNNNGG	5 cut(s)	120, 241, 299, 353, 891
BsmAI	GTCTC	2 cut(s)	226, 589
BsmBI	CGTCTC	1 cut(s)	589
BsmFI	GGGAC	2 cut(s)	307, 663
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	5 cut(s)	28, 511, 564, 620, 658
BsoBI	CYCGRG	1 cut(s)	586
Bsp119I	TTCGAA	1 cut(s)	81
Bsp143I	GATC	4 cut(s)	3, 373, 493, 835
BspACI	CCGC	8 cut(s)	293, 330, 385, 515, 702, 710, 722, 885
BspANI	GGCC	5 cut(s)	28, 511, 564, 620, 658
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	3 cut(s)	63, 651, 657
BspPI	GGATC	2 cut(s)	368, 488
BspT104I	TTCGAA	1 cut(s)	81
BsrDI	GCAATG	3 cut(s)	315, 568, 711
BsrFI	RCCGGY	2 cut(s)	507, 620
BssAI	RCCGGY	2 cut(s)	507, 620
BssECI	CCNNGG	3 cut(s)	114, 653, 890
BssMI	GATC	4 cut(s)	3, 373, 493, 835
BssNI	GRCGYC	1 cut(s)	267
BssSI	CACGAG	1 cut(s)	236
Bst2BI	CACGAG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	37
BstACI	GRCGYC	1 cut(s)	267
BstBI	TTCGAA	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	698, 702
BstDEI	CTNAG	4 cut(s)	280, 490, 499, 786
BstH2I	RGCGCY	1 cut(s)	364
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	4 cut(s)	6, 376, 496, 838
BstMAI	GTCTC	2 cut(s)	226, 589
BstMBI	GATC	4 cut(s)	3, 373, 493, 835
BstMCI	CGRYCG	2 cut(s)	114, 347
BstMWI	GCNNNNNNNGC	6 cut(s)	19, 264, 367, 517, 570, 706
BstSCI	CCNGG	3 cut(s)	113, 346, 652
BstV1I	GCAGC	3 cut(s)	165, 213, 504
BstV2I	GAAGAC	3 cut(s)	113, 294, 417
BstX2I	RGATCY	2 cut(s)	373, 493
BstYI	RGATCY	2 cut(s)	373, 493
BsuRI	GGCC	5 cut(s)	28, 511, 564, 620, 658
Cac8I	GCNNGC	2 cut(s)	698, 702
CciI	TCATGA	1 cut(s)	454
CfoI	GCGC	1 cut(s)	363
Cfr10I	RCCGGY	2 cut(s)	507, 620
Cfr13I	GGNCC	2 cut(s)	650, 656
CseI	GACGC	2 cut(s)	256, 662
Csp6I	GTAC	1 cut(s)	930
CviAII	CATG	4 cut(s)	7, 455, 800, 864
CviQI	GTAC	1 cut(s)	930
DdeI	CTNAG	4 cut(s)	280, 490, 499, 786
DpnI	GATC	4 cut(s)	5, 375, 495, 837
DpnII	GATC	4 cut(s)	3, 373, 493, 835
DriI	GACNNNNNGTC	2 cut(s)	238, 295
EaeI	YGGCCR	1 cut(s)	509
Eam1105I	GACNNNNNGTC	2 cut(s)	238, 295
Eco47I	GGWCC	1 cut(s)	650
Eco88I	CYCGRG	1 cut(s)	586
Esp3I	CGTCTC	1 cut(s)	589
FaeI	CATG	4 cut(s)	10, 458, 803, 867
FaiI	YATR	9 cut(s)	8, 409, 456, 681, 753, 801, 813, 865, 899
FaqI	GGGAC	2 cut(s)	307, 663
FatI	CATG	4 cut(s)	6, 454, 799, 863
FauI	CCCGC	4 cut(s)	300, 337, 709, 892
FbaI	TGATCA	2 cut(s)	3, 835
Fnu4HI	GCNGC	5 cut(s)	154, 202, 385, 518, 710
Fsp4HI	GCNGC	5 cut(s)	154, 202, 385, 518, 710
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	5 cut(s)	154, 202, 385, 518, 710
HaeII	RGCGCY	1 cut(s)	364
HaeIII	GGCC	5 cut(s)	28, 511, 564, 620, 658
HapII	CCGG	7 cut(s)	114, 130, 300, 347, 508, 621, 653
HgaI	GACGC	2 cut(s)	256, 662
HhaI	GCGC	1 cut(s)	363
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	4 cut(s)	10, 458, 803, 867
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HindIII	AAGCTT	1 cut(s)	923
HinfI	GANTC	2 cut(s)	239, 782
HpaII	CCGG	7 cut(s)	114, 130, 300, 347, 508, 621, 653
HphI	GGTGA	2 cut(s)	725, 736
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	3 cut(s)	226, 244, 272
Hpy188III	TCNNGA	2 cut(s)	342, 455
Hpy8I	GTNNAC	1 cut(s)	505
Hpy99I	CGWCG	3 cut(s)	188, 272, 678
HpyAV	CCTTC	4 cut(s)	90, 96, 589, 843
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	4 cut(s)	183, 602, 728, 913
HpyCH4V	TGCA	2 cut(s)	395, 528
HpyF10VI	GCNNNNNNNGC	6 cut(s)	19, 264, 367, 517, 570, 706
HpyF3I	CTNAG	4 cut(s)	280, 490, 499, 786
HpySE526I	ACGT	4 cut(s)	183, 602, 728, 913
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	4 cut(s)	10, 458, 803, 867
HspAI	GCGC	1 cut(s)	361
Ksp22I	TGATCA	2 cut(s)	3, 835
Kzo9I	GATC	4 cut(s)	3, 373, 493, 835
LmnI	GCTCC	2 cut(s)	89, 772
LpnPI	CCDG	9 cut(s)	78, 127, 143, 313, 360, 373, 521, 634, 666
Lsp1109I	GCAGC	3 cut(s)	165, 213, 504
LweI	GCATC	4 cut(s)	151, 546, 622, 864
MaeII	ACGT	4 cut(s)	183, 602, 728, 913
MaeIII	GTNAC	1 cut(s)	724
MalI	GATC	4 cut(s)	5, 375, 495, 837
MboI	GATC	4 cut(s)	3, 373, 493, 835
MboII	GAAGA	6 cut(s)	118, 156, 159, 299, 417, 443
MflI	RGATCY	2 cut(s)	373, 493
MluCI	AATT	4 cut(s)	15, 273, 523, 748
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	3 cut(s)	222, 250, 888
MroXI	GAANNNNTTC	1 cut(s)	447
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	843
MspA1I	CMGCKG	1 cut(s)	517
MspI	CCGG	7 cut(s)	114, 130, 300, 347, 508, 621, 653
MspR9I	CCNGG	3 cut(s)	115, 348, 654
Mva1269I	GAATGC	1 cut(s)	397
MwoI	GCNNNNNNNGC	6 cut(s)	19, 264, 367, 517, 570, 706
NciI	CCSGG	3 cut(s)	115, 348, 654
NdeII	GATC	4 cut(s)	3, 373, 493, 835
NlaIII	CATG	4 cut(s)	10, 458, 803, 867
NlaIV	GGNNCC	3 cut(s)	63, 651, 657
NmuCI	GTSAC	1 cut(s)	724
NspV	TTCGAA	1 cut(s)	81
PagI	TCATGA	1 cut(s)	454
PcsI	WCGNNNNNNNCGW	1 cut(s)	311
PctI	GAATGC	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	782
PkrI	GCNGC	5 cut(s)	155, 203, 386, 519, 711
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Psp1406I	AACGTT	1 cut(s)	913
PspN4I	GGNNCC	3 cut(s)	63, 651, 657
PspPI	GGNCC	2 cut(s)	650, 656
PsuI	RGATCY	2 cut(s)	373, 493
RsaI	GTAC	1 cut(s)	931
RsaNI	GTAC	1 cut(s)	930
RseI	CAYNNNNRTG	1 cut(s)	843
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	5 cut(s)	154, 202, 385, 518, 710
Sau3AI	GATC	4 cut(s)	3, 373, 493, 835
Sau96I	GGNCC	2 cut(s)	650, 656
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	3 cut(s)	115, 348, 654
SetI	ASST	8 cut(s)	71, 186, 407, 605, 731, 857, 916, 927
SfaNI	GCATC	4 cut(s)	151, 546, 622, 864
SfuI	TTCGAA	1 cut(s)	81
SinI	GGWCC	1 cut(s)	650
SmiMI	CAYNNNNRTG	1 cut(s)	843
Sse9I	AATT	4 cut(s)	15, 273, 523, 748
SsiI	CCGC	8 cut(s)	293, 330, 385, 515, 702, 710, 722, 885
SspI	AATATT	1 cut(s)	52
StyD4I	CCNGG	3 cut(s)	113, 346, 652
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	4 cut(s)	186, 605, 731, 916
TaqI	TCGA	1 cut(s)	81
TasI	AATT	4 cut(s)	15, 273, 523, 748
TauI	GCSGC	2 cut(s)	387, 712
TfiI	GAWTC	1 cut(s)	782
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	724
TseI	GCWGC	3 cut(s)	153, 201, 517
Tsp45I	GTSAC	1 cut(s)	724
TspDTI	ATGAA	2 cut(s)	443, 471
TspGWI	ACGGA	2 cut(s)	798, 857
VpaK11BI	GGWCC	1 cut(s)	650
XmnI	GAANNNNTTC	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.