Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004524

Physical Location & Seq

Genomic Coordinates Forward (+)

38242745 .. 38249769

Gene Structure 7025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00245330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGCCTGCAATACCACAGCTGTTTGCGGTGATGTGTTACCAATGTAGGTGGAATTATAGAAATAAAGAGGATGTGGAGCAAGTTGATTCTAAGTGTGATGAGCATGATGTTCCGTATGATGTTTTGTGGCTTGTTATTGATCACACGGATGGAAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000902 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005975 GO:0005976 GO:0006073 GO:0006464 GO:0006491 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009250 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0015926 GO:0016043 GO:0016049 GO:0016051 GO:0016787 GO:0016798 GO:0019538 GO:0030243 GO:0030244 GO:0030587 GO:0031288 GO:0032502 GO:0032989 GO:0033692 GO:0033919 GO:0034637 GO:0034645 GO:0036211 GO:0040007 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043687 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0051274 GO:0051703 GO:0051704 GO:0051707 GO:0060560 GO:0071704 GO:0071840 GO:0090599 GO:0090600 GO:0090702 GO:0098542 GO:0099120 GO:1901135 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04141 map00510 map01100 map04141

Pfam Domains

Protein Families

DUF5110 Gal_mutarotas_2 Glyco_hydro_31

Protein Analysis

53

Amino Acids

6.37

Weight (kDa)

4.78

Isoelectric Point (pI)

67.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_31_2nd	PF01055	2 - 51	2.2e-10	Glycosyl hydrolases family 31 TIM-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25560 FvH4_1g25560 FvH4_1g25560
malus_domestica	MD15G1396100.v1.1 MD17G1250300.v1.1
prunus_persica	Prupe.3G148600_v2.0.a1
pyrus_communis	pycom17g25420
rosa_chinensis	RchiOBHm_Chr1g0336261 RchiOBHm_Chr2g0123721 RchiOBHm_Chr2g0123751
rosa_laevigata	RLG00000018773
rosa_multiflora	Rmu_co8452975.1_g000001 Rmu_sc0002870.1_g000009 Rmu_sc0021381.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085250 Rroxscaffold_2G00115060 Rroxscaffold_2G00120380 Rroxscaffold_3G00230560 Rroxscaffold_3G00245330 Rroxscaffold_4G00324630 Rroxscaffold_7G00170480 Rroxscaffold_7G00193250 Rroxscaffold_7G00202250 Rroxscaffold_7G00202260
rosa_rugosa	Rorug02G0247500
rosa_samantha	Rh2AG306600 Rh2BG315000 Rh2BG315100 Rh2CG293000 Rh2DG330300 Rh4DG109900
rosa_wichuraiana	Rw2G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	26
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	40
BccI	CCATC	1 cut(s)	143
BclI	TGATCA	1 cut(s)	139
BseGI	GGATG	2 cut(s)	76, 154
Bsp143I	GATC	1 cut(s)	139
BspACI	CCGC	1 cut(s)	26
BssMI	GATC	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	90
BstF5I	GGATG	2 cut(s)	76, 154
BstKTI	GATC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	76, 154
Cac8I	GCNNGC	1 cut(s)	6
CspCI	CAANNNNNGTGG	2 cut(s)	29, 64
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	2 cut(s)	19, 130
CviKI_1	RGCY	2 cut(s)	19, 130
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
FaeI	CATG	1 cut(s)	107
FaiI	YATR	3 cut(s)	57, 105, 117
FatI	CATG	1 cut(s)	103
FbaI	TGATCA	1 cut(s)	139
FokI	GGATG	1 cut(s)	83
Hin1II	CATG	1 cut(s)	107
HinfI	GANTC	1 cut(s)	86
HphI	GGTGA	1 cut(s)	40
HpyCH4V	TGCA	1 cut(s)	8
HpyF3I	CTNAG	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	139
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MluCI	AATT	1 cut(s)	52
MnlI	CCTC	2 cut(s)	61, 150
MslI	CAYNNNNRTG	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	19
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	139
SetI	ASST	3 cut(s)	21, 50, 161
SgeI	CNNG	5 cut(s)	17, 92, 116, 143, 157
SmiMI	CAYNNNNRTG	1 cut(s)	147
Sse9I	AATT	1 cut(s)	52
SsiI	CCGC	1 cut(s)	26
TasI	AATT	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	86
TspGWI	ACGGA	2 cut(s)	102, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.