Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002758

Physical Location & Seq

Genomic Coordinates Reverse (-)

12465634 .. 12466871

Gene Structure 1238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1156600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTCTATCTCAGATACAGGCTTAGGTTCACAGATAATGGATATGGATGCATGTGCAACCACTGAGGACATCAATGATGAAACTGGATTTGCATCTCCACAGGCCATAATTCATGAAAAAAAATTGGTTAAGGATAAGGTAATTTCTGGTGAGACATTTTATGAGGCGGAGTGCGGTGATAATTCAAATTTTGTATCTGTTACCTTCTTGACTCGGAGGTCTAGCTCGCCTGATTATGATGGTGTTGACACCCAGATGAATCTCCGCATGTCCAAATTGGAGTTCTTTTGCAACAGACCCACTCTTGTTGCTTTGATTGATTTCGGCCTGGATTTAAGCTCTGTGTATGACGTGGAAGTTAGTGCAAACACGACTAAGGTTCCAGATGATAAACATTTTATGAACAAAGAAAAGACTGAAGAAAATGGGCGTGTCAAAGGGTTGCTGGGTTATGGTAAAGGTCGTGTAGTATTTTATTTAACCATGAATGTTGACAATGCGACTGTGTTTCTTAACAAAGAGGATGGCTCTTCGTTTGCGATGTTTGTGCAAGAAAGTTTCCTGCTGGATCTCAAGGTCCACCCGAGTTCTCTTTCCATTGAAGGCACCCTAGGAAATTTTAGACTCCGTGATATGTCTCTTGGAGCAGATCACTGTTGCGATTGGCTTTGTAATATACGTAATCGAAGTGTTGAATCCCTTATCAAGTTCAAATTTAGTGCTGAAGATGATGACTATGAAGGATATGTTTACAGTTTGTGTGGCCAACTTTCTGCTGTCCGCATCATTTTCCTCTATAGGTTTGTTCAGGAGGTATGTTTGGCATTGCTCTCAATCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Chorein_N Pex24p SHR-BD VPS13 VPS13_C VPS13_mid_rpt Vps62

Protein Analysis

281

Amino Acids

31.36

Weight (kDa)

4.69

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48090 AT1G48090 AT1G48090 AT1G48090 AT1G48090 AT1G48090
fragaria_vesca	FvH4_4g20980 FvH4_4g20980
malus_domestica	MD13G1146800.v1.1 MD16G1145300.v1.1 MD16G1145600.v1.1 MD16G1156200.v1.1 MD16G1156300.v1.1 MD16G1156600.v1.1
prunus_persica	Prupe.1G110200_v2.0.a1 Prupe.1G110200_v2.0.a1 Prupe.1G110200_v2.0.a1 Prupe.1G110200_v2.0.a1 Prupe.3G141600_v2.0.a1
pyrus_communis	pycom13g12640 pycom16g12480
rosa_chinensis	RchiOBHm_Chr4g0407731 RchiOBHm_Chr4g0407781 RchiOBHm_Chr4g0426501
rosa_laevigata	RLG00000007293
rosa_multiflora	Rmu_sc0000600.1_g000056 Rmu_sc0001821.1_g000002
rosa_roxburghii	Rroxscaffold_5G00368530
rosa_rugosa	Rorug04G0092700 Rorug04G0212200 Rorug04G0212400 Rorug04G0212400
rosa_samantha	Rh4AG268100 Rh4BG274300 Rh4CG288300 Rh4CG288800 Rh4DG271100
rosa_wichuraiana	Rw4G011930 Rw4G023260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	217
AccB1I	GGYRCC	1 cut(s)	605
AciI	CCGC	4 cut(s)	167, 174, 265, 781
AclWI	GGATC	1 cut(s)	576
AcoI	YGGCCR	1 cut(s)	763
AcsI	RAATTY	3 cut(s)	187, 616, 713
AcuI	CTGAAG	2 cut(s)	438, 744
AgsI	TTSAA	4 cut(s)	186, 602, 695, 712
AjiI	CACGTC	1 cut(s)	352
AjnI	CCWGG	1 cut(s)	327
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AluBI	AGCT	2 cut(s)	225, 339
AluI	AGCT	2 cut(s)	225, 339
Alw26I	GTCTC	2 cut(s)	146, 642
AlwI	GGATC	1 cut(s)	576
Ama87I	CYCGRG	1 cut(s)	583
AoxI	GGCC	3 cut(s)	102, 325, 763
ApoI	RAATTY	3 cut(s)	187, 616, 713
AspA2I	CCTAGG	1 cut(s)	610
AspS9I	GGNCC	1 cut(s)	577
AsuHPI	GGTGA	2 cut(s)	161, 188
AvaI	CYCGRG	1 cut(s)	583
AvaII	GGWCC	1 cut(s)	577
AvrII	CCTAGG	1 cut(s)	610
BalI	TGGCCA	1 cut(s)	765
BanI	GGYRCC	1 cut(s)	605
BccI	CCATC	2 cut(s)	233, 518
BcgI	CGANNNNNNTGC	2 cut(s)	529, 563
BciT130I	CCWGG	1 cut(s)	329
BcoDI	GTCTC	2 cut(s)	146, 642
BfaI	CTAG	2 cut(s)	222, 611
BfmI	CTRYAG	1 cut(s)	796
BlnI	CCTAGG	1 cut(s)	610
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	577
BmeT110I	CYCGRG	1 cut(s)	583
BmgBI	CACGTC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	577
BmiI	GGNNCC	2 cut(s)	381, 607
BmrFI	CCNGG	1 cut(s)	329
BmsI	GCATC	3 cut(s)	37, 101, 792
BplI	GAGNNNNNCTC	2 cut(s)	512, 544
Bpu10I	CCTNAGC	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	557
BsaAI	YACGTR	1 cut(s)	680
BsaBI	GATNNNNATC	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	610
Bse1I	ACTGG	1 cut(s)	88
Bse3DI	GCAATG	1 cut(s)	824
Bse8I	GATNNNNATC	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	610
BseGI	GGATG	2 cut(s)	52, 529
BseJI	GATNNNNATC	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	824
BseMII	CTCAG	2 cut(s)	24, 54
BseNI	ACTGG	1 cut(s)	88
BseYI	CCCAGC	1 cut(s)	445
BshFI	GGCC	3 cut(s)	104, 327, 765
BshNI	GGYRCC	1 cut(s)	605
BsiHKCI	CYCGRG	1 cut(s)	583
BsmAI	GTCTC	2 cut(s)	146, 642
BsnI	GGCC	3 cut(s)	104, 327, 765
BsoBI	CYCGRG	1 cut(s)	583
Bsp143I	GATC	2 cut(s)	568, 649
BspACI	CCGC	4 cut(s)	167, 174, 265, 781
BspANI	GGCC	3 cut(s)	104, 327, 765
BspCNI	CTCAG	2 cut(s)	23, 55
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	381, 607
BspPI	GGATC	1 cut(s)	576
BspQI	GCTCTTC	1 cut(s)	535
BspT107I	GGYRCC	1 cut(s)	605
BsrDI	GCAATG	1 cut(s)	824
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	610
BssMI	GATC	2 cut(s)	568, 649
BssT1I	CCWWGG	1 cut(s)	610
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	3 cut(s)	505, 656, 755
Bst6I	CTCTTC	1 cut(s)	535
BstBAI	YACGTR	1 cut(s)	680
BstC8I	GCNNGC	1 cut(s)	227
BstDEI	CTNAG	4 cut(s)	10, 22, 63, 375
BstF5I	GGATG	2 cut(s)	52, 529
BstKTI	GATC	2 cut(s)	571, 652
BstMAI	GTCTC	2 cut(s)	146, 642
BstMBI	GATC	2 cut(s)	568, 649
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	2 cut(s)	54, 271
BstSCI	CCNGG	1 cut(s)	327
BstSFI	CTRYAG	1 cut(s)	796
BstSNI	TACGTA	1 cut(s)	680
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
BsuRI	GGCC	3 cut(s)	104, 327, 765
BtgZI	GCGATG	1 cut(s)	554
BtrI	CACGTC	1 cut(s)	352
BtsCI	GGATG	2 cut(s)	52, 529
BtsIMutI	CAGTG	2 cut(s)	60, 652
Cac8I	GCNNGC	1 cut(s)	227
CciI	TCATGA	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	577
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviAII	CATG	4 cut(s)	51, 113, 268, 484
CviJI	RGCY	8 cut(s)	21, 104, 225, 327, 339, 528, 667, 765
CviKI_1	RGCY	8 cut(s)	21, 104, 225, 327, 339, 528, 667, 765
DdeI	CTNAG	4 cut(s)	10, 22, 63, 375
DpnI	GATC	2 cut(s)	570, 651
DpnII	GATC	2 cut(s)	568, 649
DrdI	GACNNNNNNGTC	1 cut(s)	217
DseDI	GACNNNNNNGTC	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	763
Eam1104I	CTCTTC	1 cut(s)	535
EarI	CTCTTC	1 cut(s)	535
EciI	GGCGGA	1 cut(s)	182
Eco105I	TACGTA	1 cut(s)	680
Eco130I	CCWWGG	1 cut(s)	610
Eco47I	GGWCC	1 cut(s)	577
Eco57I	CTGAAG	2 cut(s)	438, 744
Eco88I	CYCGRG	1 cut(s)	583
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	610
EcoT22I	ATGCAT	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	610
FaeI	CATG	4 cut(s)	54, 116, 271, 487
FatI	CATG	4 cut(s)	50, 112, 267, 483
FokI	GGATG	2 cut(s)	59, 536
FspBI	CTAG	2 cut(s)	222, 611
GsaI	CCCAGC	1 cut(s)	449
HaeIII	GGCC	3 cut(s)	104, 327, 765
Hin1II	CATG	4 cut(s)	54, 116, 271, 487
HincII	GTYRAC	2 cut(s)	247, 493
HindII	GTYRAC	2 cut(s)	247, 493
HinfI	GANTC	4 cut(s)	211, 259, 624, 695
HphI	GGTGA	2 cut(s)	161, 188
Hpy166II	GTNNAC	5 cut(s)	29, 247, 493, 580, 751
Hpy188I	TCNGA	2 cut(s)	13, 216
Hpy188III	TCNNGA	4 cut(s)	113, 208, 383, 809
Hpy8I	GTNNAC	5 cut(s)	29, 247, 493, 580, 751
HpyAV	CCTTC	3 cut(s)	214, 596, 734
HpyCH4III	ACNGT	3 cut(s)	505, 656, 755
HpyCH4IV	ACGT	2 cut(s)	351, 679
HpyCH4V	TGCA	6 cut(s)	50, 56, 92, 291, 365, 550
HpyF3I	CTNAG	4 cut(s)	10, 22, 63, 375
HpySE526I	ACGT	2 cut(s)	351, 679
Hsp92II	CATG	4 cut(s)	54, 116, 271, 487
Kzo9I	GATC	2 cut(s)	568, 649
LguI	GCTCTTC	1 cut(s)	535
LmnI	GCTCC	1 cut(s)	644
LweI	GCATC	3 cut(s)	37, 101, 792
MaeI	CTAG	2 cut(s)	222, 611
MaeII	ACGT	2 cut(s)	351, 679
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	2 cut(s)	570, 651
MboI	GATC	2 cut(s)	568, 649
MboII	GAAGA	3 cut(s)	431, 522, 737
MflI	RGATCY	1 cut(s)	568
MlsI	TGGCCA	1 cut(s)	765
MluCI	AATT	8 cut(s)	108, 122, 141, 181, 187, 275, 616, 713
MluNI	TGGCCA	1 cut(s)	765
MlyI	GAGTC	2 cut(s)	205, 618
MnlI	CCTC	6 cut(s)	58, 157, 210, 514, 803, 805
Mox20I	TGGCCA	1 cut(s)	765
Mph1103I	ATGCAT	1 cut(s)	52
MscI	TGGCCA	1 cut(s)	765
MseI	TTAA	4 cut(s)	129, 335, 479, 513
MslI	CAYNNNNRTG	1 cut(s)	254
Msp20I	TGGCCA	1 cut(s)	765
MspR9I	CCNGG	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	329
NdeII	GATC	2 cut(s)	568, 649
NlaIII	CATG	4 cut(s)	54, 116, 271, 487
NlaIV	GGNNCC	2 cut(s)	381, 607
NsiI	ATGCAT	1 cut(s)	52
NspI	RCATGY	2 cut(s)	54, 271
PagI	TCATGA	1 cut(s)	112
PciSI	GCTCTTC	1 cut(s)	535
PfeI	GAWTC	2 cut(s)	259, 695
PleI	GAGTC	2 cut(s)	205, 618
PpsI	GAGTC	2 cut(s)	205, 618
Ppu21I	YACGTR	1 cut(s)	680
Psp6I	CCWGG	1 cut(s)	327
PspFI	CCCAGC	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	381, 607
PspPI	GGNCC	1 cut(s)	577
PsuI	RGATCY	1 cut(s)	568
RseI	CAYNNNNRTG	1 cut(s)	254
SapI	GCTCTTC	1 cut(s)	535
SaqAI	TTAA	4 cut(s)	129, 335, 479, 513
Sau3AI	GATC	2 cut(s)	568, 649
Sau96I	GGNCC	1 cut(s)	577
SchI	GAGTC	2 cut(s)	205, 618
ScrFI	CCNGG	1 cut(s)	329
SfaNI	GCATC	3 cut(s)	37, 101, 792
SfcI	CTRYAG	1 cut(s)	796
SinI	GGWCC	1 cut(s)	577
SmiMI	CAYNNNNRTG	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
SnaBI	TACGTA	1 cut(s)	680
Sse9I	AATT	8 cut(s)	108, 122, 141, 181, 187, 275, 616, 713
SsiI	CCGC	4 cut(s)	167, 174, 265, 781
SspMI	CTAG	2 cut(s)	222, 611
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	610
TaaI	ACNGT	3 cut(s)	505, 656, 755
TaiI	ACGT	2 cut(s)	354, 682
TaqI	TCGA	1 cut(s)	685
TasI	AATT	8 cut(s)	108, 122, 141, 181, 187, 275, 616, 713
TfiI	GAWTC	2 cut(s)	259, 695
Tru1I	TTAA	4 cut(s)	129, 335, 479, 513
Tru9I	TTAA	4 cut(s)	129, 335, 479, 513
TscAI	CASTG	2 cut(s)	67, 659
TspDTI	ATGAA	7 cut(s)	93, 101, 129, 272, 416, 500, 753
TspGWI	ACGGA	1 cut(s)	617
TspRI	CASTG	2 cut(s)	67, 659
VpaK11BI	GGWCC	1 cut(s)	577
XapI	RAATTY	3 cut(s)	187, 616, 713
XceI	RCATGY	2 cut(s)	54, 271
XmaJI	CCTAGG	1 cut(s)	610
XspI	CTAG	2 cut(s)	222, 611
Zsp2I	ATGCAT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.