Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002758

Physical Location & Seq

Genomic Coordinates Forward (+)

28151423 .. 28153130

Gene Structure 1708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G011930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGATTCTTTGGGAAGGTGGCATGACACTTAAGACAAAGCTTCACTCTTTAAAAATCAAAGATGAGCTTCAAGGTCGTCTCTCTACAACCCCACAGTATTTAGCTTGTTCTGTGCTGAAGAGTGACAATTTAGTTTCATCCCCCGGCATAATTGATCCACATTGGAAAGAAATGTATGTTTTACTTCATGAGGAGGATGATACTTTTACAGATGCTTTGCCAGATTTTATGTCTGTATCTGATGCAGGCTTTGGTTCACCAACTTCAGATACGGTTTCATGTCTAACAACTGAGGACAGCAATGATGCTGCTGGATTTGCATCTGCTAAAGGCTTAGTCCTTGAAAAGAATCTTGTTACAGCAAGGTGCATTTCTGCTGAGGAATTTTATGAGGCGGAGAGTAGTGACTATTCCAATTTTGTCTTTCTCACCTTCTCGACTCTGAGTTCTAGTTCACCTGATTATGATGGTATTGACACACAGTTGAGCATCCGTATGTCAAAACTGGAATTCTTCTGCAACAGACCTACTTTGGTCGCTTTAATTGATTTTGGGCTGGACTTAAGCTCTGTGTACAGTGAGGAAAACACTGCAGACATTACTGAAGGTTCAGGTGACAAATCTTTGACGAACAAAGAAAAGACAGAAGAAATTGGGCGTGTCAAAGGCTTGCTGGGTTATGGTAAAGGTCGTGTAGTATTTTATTTGAACATGAACGCGTACGTGGACAGTGTGACTGTGTTTCTCAACAAGGAGGATGCTTCTCTGCTTGCGACGTTTGTGCAAGAAAGTTTTGTGCTAGATCTGAAGGTCCACCCAAGTTCTCTTTCCATTGAAGGCACCCTAGGAAATTTTAGACTCTGTGATATGTCTCTTGGAGAAGATAACTGTTGGGCCTGGCTATGTGATATACGCAATCCAGATGTGGAATCCCTTATCAAGTTCAACTTTAAGTCTTACAGTGCTGAAGACGATGATTATAGTTTGTGTGGTCAATTTGCTGCTGTTCGTATTGTCTTCCTTTACAGCTTTGTTCAGGAGATAACCGCGTACTTTATGGAACTTGCTACCCTACATATTGTGGAATGTGTTCTTATAGTCTGTTTTGTCAAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Chorein_N Pex24p SHR-BD VPS13 VPS13_C VPS13_mid_rpt Vps62

Protein Analysis

372

Amino Acids

41.34

Weight (kDa)

4.41

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48090 AT1G48090 AT1G48090 AT1G48090 AT1G48090 AT1G48090
fragaria_vesca	FvH4_4g20980 FvH4_4g20980
malus_domestica	MD13G1146800.v1.1 MD16G1145300.v1.1 MD16G1145600.v1.1 MD16G1156200.v1.1 MD16G1156300.v1.1 MD16G1156600.v1.1
prunus_persica	Prupe.1G110200_v2.0.a1 Prupe.1G110200_v2.0.a1 Prupe.1G110200_v2.0.a1 Prupe.1G110200_v2.0.a1 Prupe.3G141600_v2.0.a1
pyrus_communis	pycom13g12640 pycom16g12480
rosa_chinensis	RchiOBHm_Chr4g0407731 RchiOBHm_Chr4g0407781 RchiOBHm_Chr4g0426501
rosa_laevigata	RLG00000007293
rosa_multiflora	Rmu_sc0000600.1_g000056 Rmu_sc0001821.1_g000002
rosa_roxburghii	Rroxscaffold_5G00368530
rosa_rugosa	Rorug04G0092700 Rorug04G0212200 Rorug04G0212400 Rorug04G0212400
rosa_samantha	Rh4AG268100 Rh4BG274300 Rh4CG288300 Rh4CG288800 Rh4DG271100
rosa_wichuraiana	Rw4G011930 Rw4G023260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	839
AccII	CGCG	2 cut(s)	719, 1049
AciI	CCGC	2 cut(s)	395, 1047
AclWI	GGATC	1 cut(s)	149
AcsI	RAATTY	3 cut(s)	383, 509, 850
AcuI	CTGAAG	5 cut(s)	137, 249, 624, 827, 987
AfaI	GTAC	3 cut(s)	575, 722, 1052
AflII	CTTAAG	2 cut(s)	29, 562
AflIII	ACRYGT	1 cut(s)	717
AgsI	TTSAA	5 cut(s)	71, 344, 709, 836, 946
AjnI	CCWGG	1 cut(s)	896
AjuI	GAANNNNNNNTTGG	2 cut(s)	811, 843
AluBI	AGCT	5 cut(s)	40, 67, 104, 567, 1029
AluI	AGCT	5 cut(s)	40, 67, 104, 567, 1029
Alw26I	GTCTC	2 cut(s)	83, 876
AlwI	GGATC	1 cut(s)	149
AoxI	GGCC	1 cut(s)	894
ApeKI	GCWGC	2 cut(s)	308, 1001
ApoI	RAATTY	3 cut(s)	383, 509, 850
Asp700I	GAANNNNTTC	1 cut(s)	1089
AspA2I	CCTAGG	1 cut(s)	844
AspS9I	GGNCC	2 cut(s)	811, 894
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	4 cut(s)	249, 421, 447, 626
AvaII	GGWCC	1 cut(s)	811
AvrII	CCTAGG	1 cut(s)	844
BanI	GGYRCC	1 cut(s)	839
BbsI	GAAGAC	2 cut(s)	975, 1009
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	295, 988
BccI	CCATC	1 cut(s)	461
BcgI	CGANNNNNNTGC	2 cut(s)	763, 797
BciT130I	CCWGG	1 cut(s)	898
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	2 cut(s)	83, 876
BfaI	CTAG	3 cut(s)	450, 800, 845
BfmI	CTRYAG	1 cut(s)	591
BfrI	CTTAAG	2 cut(s)	29, 562
BglII	AGATCT	1 cut(s)	802
BisI	GCNGC	2 cut(s)	309, 1002
BlnI	CCTAGG	1 cut(s)	844
BlsI	GCNGC	2 cut(s)	310, 1003
Bme1390I	CCNGG	2 cut(s)	144, 898
Bme18I	GGWCC	1 cut(s)	811
BmgT120I	GGNCC	2 cut(s)	811, 894
BmiI	GGNNCC	1 cut(s)	841
BmrFI	CCNGG	2 cut(s)	144, 898
BmsI	GCATC	6 cut(s)	202, 232, 295, 329, 498, 748
BpiI	GAAGAC	2 cut(s)	975, 1009
Bpu10I	CCTNAGC	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	144
BsaAI	YACGTR	1 cut(s)	724
BsaBI	GATNNNNATC	1 cut(s)	319
BsaJI	CCNNGG	2 cut(s)	142, 844
Bse1I	ACTGG	1 cut(s)	510
Bse3DI	GCAATG	1 cut(s)	307
Bse8I	GATNNNNATC	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	898
BseDI	CCNNGG	2 cut(s)	142, 844
BseGI	GGATG	4 cut(s)	137, 202, 489, 763
BseJI	GATNNNNATC	1 cut(s)	319
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	3 cut(s)	282, 369, 434
BseNI	ACTGG	1 cut(s)	510
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	295, 988
BseYI	CCCAGC	1 cut(s)	673
Bsh1236I	CGCG	2 cut(s)	719, 1049
BshFI	GGCC	1 cut(s)	896
BshNI	GGYRCC	1 cut(s)	839
BsiSI	CCGG	1 cut(s)	144
BsiWI	CGTACG	1 cut(s)	720
BsmAI	GTCTC	2 cut(s)	83, 876
BsmBI	CGTCTC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	896
Bsp1407I	TGTACA	1 cut(s)	573
Bsp143I	GATC	2 cut(s)	154, 802
BspACI	CCGC	2 cut(s)	395, 1047
BspANI	GGCC	1 cut(s)	896
BspCNI	CTCAG	3 cut(s)	283, 370, 435
BspFNI	CGCG	2 cut(s)	719, 1049
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	841
BspMAI	CTGCAG	1 cut(s)	595
BspPI	GGATC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	839
BspTI	CTTAAG	2 cut(s)	29, 562
BsrDI	GCAATG	1 cut(s)	307
BsrGI	TGTACA	1 cut(s)	573
BsrI	ACTGG	1 cut(s)	510
BssECI	CCNNGG	2 cut(s)	142, 844
BssMI	GATC	2 cut(s)	154, 802
BssT1I	CCWWGG	1 cut(s)	844
Bst2UI	CCWGG	1 cut(s)	898
Bst4CI	ACNGT	8 cut(s)	96, 274, 483, 578, 731, 739, 890, 962
Bst6I	CTCTTC	1 cut(s)	113
BstAFI	CTTAAG	2 cut(s)	29, 562
BstAUI	TGTACA	1 cut(s)	573
BstBAI	YACGTR	1 cut(s)	724
BstC8I	GCNNGC	3 cut(s)	247, 671, 771
BstDEI	CTNAG	4 cut(s)	291, 334, 378, 443
BstF5I	GGATG	4 cut(s)	137, 202, 489, 763
BstFNI	CGCG	2 cut(s)	719, 1049
BstKTI	GATC	2 cut(s)	157, 805
BstMAI	GTCTC	2 cut(s)	83, 876
BstMBI	GATC	2 cut(s)	154, 802
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNI	CCWGG	1 cut(s)	898
BstSCI	CCNGG	2 cut(s)	142, 896
BstSFI	CTRYAG	1 cut(s)	591
BstUI	CGCG	2 cut(s)	719, 1049
BstV1I	GCAGC	2 cut(s)	295, 988
BstV2I	GAAGAC	2 cut(s)	975, 1009
BstX2I	RGATCY	1 cut(s)	802
BstYI	RGATCY	1 cut(s)	802
BsuRI	GGCC	1 cut(s)	896
BtsCI	GGATG	4 cut(s)	137, 202, 489, 763
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	4 cut(s)	583, 588, 736, 967
Cac8I	GCNNGC	3 cut(s)	247, 671, 771
CciI	TCATGA	1 cut(s)	187
Cfr13I	GGNCC	2 cut(s)	811, 894
Csp6I	GTAC	3 cut(s)	574, 721, 1051
CviAII	CATG	4 cut(s)	22, 188, 279, 712
CviQI	GTAC	3 cut(s)	574, 721, 1051
DdeI	CTNAG	4 cut(s)	291, 334, 378, 443
DpnI	GATC	2 cut(s)	156, 804
DpnII	GATC	2 cut(s)	154, 802
DraI	TTTAAA	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
EciI	GGCGGA	1 cut(s)	410
Eco130I	CCWWGG	1 cut(s)	844
Eco47I	GGWCC	1 cut(s)	811
Eco57I	CTGAAG	5 cut(s)	137, 249, 624, 827, 987
EcoRI	GAATTC	1 cut(s)	509
EcoRII	CCWGG	1 cut(s)	896
EcoT14I	CCWWGG	1 cut(s)	844
ErhI	CCWWGG	1 cut(s)	844
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	4 cut(s)	25, 191, 282, 715
FalI	AAGNNNNNCTT	4 cut(s)	51, 83, 932, 964
FatI	CATG	4 cut(s)	21, 187, 278, 711
Fnu4HI	GCNGC	2 cut(s)	309, 1002
FokI	GGATG	4 cut(s)	124, 209, 476, 770
Fsp4HI	GCNGC	2 cut(s)	309, 1002
FspBI	CTAG	3 cut(s)	450, 800, 845
GluI	GCNGC	2 cut(s)	309, 1002
GsaI	CCCAGC	1 cut(s)	677
HaeIII	GGCC	1 cut(s)	896
HapII	CCGG	1 cut(s)	144
Hin1II	CATG	4 cut(s)	25, 191, 282, 715
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	5 cut(s)	4, 349, 439, 858, 929
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	4 cut(s)	249, 421, 447, 626
Hpy166II	GTNNAC	5 cut(s)	257, 455, 574, 727, 814
Hpy188I	TCNGA	4 cut(s)	241, 268, 444, 807
Hpy188III	TCNNGA	4 cut(s)	188, 436, 920, 1037
Hpy8I	GTNNAC	5 cut(s)	257, 455, 574, 727, 814
Hpy99I	CGWCG	1 cut(s)	778
HpyAV	CCTTC	5 cut(s)	8, 442, 599, 802, 830
HpyCH4III	ACNGT	8 cut(s)	96, 274, 483, 578, 731, 739, 890, 962
HpyCH4IV	ACGT	2 cut(s)	723, 776
HpyCH4V	TGCA	6 cut(s)	245, 320, 369, 519, 593, 784
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	4 cut(s)	291, 334, 378, 443
HpySE526I	ACGT	2 cut(s)	723, 776
Hsp92II	CATG	4 cut(s)	25, 191, 282, 715
Kzo9I	GATC	2 cut(s)	154, 802
Lsp1109I	GCAGC	2 cut(s)	295, 988
LweI	GCATC	6 cut(s)	202, 232, 295, 329, 498, 748
MaeI	CTAG	3 cut(s)	450, 800, 845
MaeII	ACGT	2 cut(s)	723, 776
MaeIII	GTNAC	5 cut(s)	122, 355, 404, 614, 733
MalI	GATC	2 cut(s)	156, 804
MboI	GATC	2 cut(s)	154, 802
MboII	GAAGA	6 cut(s)	130, 505, 659, 893, 980, 1009
MflI	RGATCY	1 cut(s)	802
MluCI	AATT	9 cut(s)	127, 150, 383, 415, 509, 543, 651, 850, 995
MluI	ACGCGT	1 cut(s)	717
MlyI	GAGTC	2 cut(s)	433, 852
MnlI	CCTC	7 cut(s)	184, 187, 286, 373, 385, 574, 748
MroXI	GAANNNNTTC	1 cut(s)	1089
MseI	TTAA	5 cut(s)	30, 50, 542, 563, 951
MslI	CAYNNNNRTG	1 cut(s)	494
MspCI	CTTAAG	2 cut(s)	29, 562
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	2 cut(s)	144, 898
MvaI	CCWGG	1 cut(s)	898
MvnI	CGCG	2 cut(s)	719, 1049
MwoI	GCNNNNNNNGC	1 cut(s)	317
NciI	CCSGG	1 cut(s)	144
NdeII	GATC	2 cut(s)	154, 802
NlaIII	CATG	4 cut(s)	25, 191, 282, 715
NlaIV	GGNNCC	1 cut(s)	841
NmuCI	GTSAC	4 cut(s)	122, 404, 614, 733
PagI	TCATGA	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	1089
PfeI	GAWTC	3 cut(s)	4, 349, 929
Pfl23II	CGTACG	1 cut(s)	720
PkrI	GCNGC	2 cut(s)	310, 1003
PleI	GAGTC	2 cut(s)	433, 852
PpsI	GAGTC	2 cut(s)	433, 852
Ppu21I	YACGTR	1 cut(s)	724
Psp6I	CCWGG	1 cut(s)	896
PspFI	CCCAGC	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	896
PspLI	CGTACG	1 cut(s)	720
PspN4I	GGNNCC	1 cut(s)	841
PspPI	GGNCC	2 cut(s)	811, 894
PstI	CTGCAG	1 cut(s)	595
PsuI	RGATCY	1 cut(s)	802
RsaI	GTAC	3 cut(s)	575, 722, 1052
RsaNI	GTAC	3 cut(s)	574, 721, 1051
RseI	CAYNNNNRTG	1 cut(s)	494
SaqAI	TTAA	5 cut(s)	30, 50, 542, 563, 951
SatI	GCNGC	2 cut(s)	309, 1002
Sau3AI	GATC	2 cut(s)	154, 802
Sau96I	GGNCC	2 cut(s)	811, 894
SchI	GAGTC	2 cut(s)	433, 852
ScrFI	CCNGG	2 cut(s)	144, 898
SfaNI	GCATC	6 cut(s)	202, 232, 295, 329, 498, 748
SfcI	CTRYAG	1 cut(s)	591
SinI	GGWCC	1 cut(s)	811
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	2 cut(s)	29, 562
SmoI	CTYRAG	2 cut(s)	29, 562
Sse9I	AATT	9 cut(s)	127, 150, 383, 415, 509, 543, 651, 850, 995
SsiI	CCGC	2 cut(s)	395, 1047
SspMI	CTAG	3 cut(s)	450, 800, 845
StyD4I	CCNGG	2 cut(s)	142, 896
StyI	CCWWGG	1 cut(s)	844
TaaI	ACNGT	8 cut(s)	96, 274, 483, 578, 731, 739, 890, 962
TaiI	ACGT	2 cut(s)	726, 779
TaqI	TCGA	1 cut(s)	437
TasI	AATT	9 cut(s)	127, 150, 383, 415, 509, 543, 651, 850, 995
TatI	WGTACW	1 cut(s)	573
TfiI	GAWTC	3 cut(s)	4, 349, 929
Tru1I	TTAA	5 cut(s)	30, 50, 542, 563, 951
Tru9I	TTAA	5 cut(s)	30, 50, 542, 563, 951
TscAI	CASTG	4 cut(s)	583, 595, 736, 967
TseFI	GTSAC	4 cut(s)	122, 404, 614, 733
TseI	GCWGC	2 cut(s)	308, 1001
Tsp45I	GTSAC	4 cut(s)	122, 404, 614, 733
TspDTI	ATGAA	4 cut(s)	126, 176, 267, 728
TspGWI	ACGGA	1 cut(s)	482
TspRI	CASTG	4 cut(s)	583, 595, 736, 967
Vha464I	CTTAAG	2 cut(s)	29, 562
VpaK11BI	GGWCC	1 cut(s)	811
XapI	RAATTY	3 cut(s)	383, 509, 850
XmaJI	CCTAGG	1 cut(s)	844
XmnI	GAANNNNTTC	1 cut(s)	1089
XspI	CTAG	3 cut(s)	450, 800, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.