Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002758

Physical Location & Seq

Genomic Coordinates Reverse (-)

50267827 .. 50303481

Gene Structure 35655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00368530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGAGGGAGCAAGCTCGTGTAATAAAGTGCATCCATGACACCCCCCAGGCTTTTGAAGTGTACACCTCAATTGAACGAGCAATGAGCATTTATGGACCAAACAAAACAAAGGAAAGGCCAACAAAAAATGTGACAAAGCCATATTCACCGCTTGCTGATAGCACCAGTGCTGAAGTTAACCCAAAAGAAGGGCTTAGCTCCTTGTCACCCCGACCGATGGCACTTCCTCGTTCAATGTTTGGCAGGAGTGCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Chorein_N Pex24p SHR-BD VPS13 VPS13_C VPS13_mid_rpt Vps62

Protein Analysis

85

Amino Acids

9.47

Weight (kDa)

9.73

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48090 AT1G48090 AT1G48090 AT1G48090 AT1G48090 AT1G48090
fragaria_vesca	FvH4_4g20980 FvH4_4g20980
malus_domestica	MD13G1146800.v1.1 MD16G1145300.v1.1 MD16G1145600.v1.1 MD16G1156200.v1.1 MD16G1156300.v1.1 MD16G1156600.v1.1
prunus_persica	Prupe.1G110200_v2.0.a1 Prupe.1G110200_v2.0.a1 Prupe.1G110200_v2.0.a1 Prupe.1G110200_v2.0.a1 Prupe.3G141600_v2.0.a1
pyrus_communis	pycom13g12640 pycom16g12480
rosa_chinensis	RchiOBHm_Chr4g0407731 RchiOBHm_Chr4g0407781 RchiOBHm_Chr4g0426501
rosa_laevigata	RLG00000007293
rosa_multiflora	Rmu_sc0000600.1_g000056 Rmu_sc0001821.1_g000002
rosa_roxburghii	Rroxscaffold_5G00368530
rosa_rugosa	Rorug04G0092700 Rorug04G0212200 Rorug04G0212400 Rorug04G0212400
rosa_samantha	Rh4AG268100 Rh4BG274300 Rh4CG288300 Rh4CG288800 Rh4DG271100
rosa_wichuraiana	Rw4G011930 Rw4G023260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	192
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	2 cut(s)	188, 217
AgsI	TTSAA	3 cut(s)	56, 74, 234
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	2 cut(s)	14, 198
AluI	AGCT	2 cut(s)	14, 198
AoxI	GGCC	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	95
AsuHPI	GGTGA	2 cut(s)	138, 198
AvaII	GGWCC	1 cut(s)	95
BauI	CACGAG	1 cut(s)	15
BccI	CCATC	1 cut(s)	211
BciT130I	CCWGG	1 cut(s)	47
BlpI	GCTNAGC	1 cut(s)	194
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	95
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	39
Bpu1102I	GCTNAGC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 217
Bse1I	ACTGG	1 cut(s)	165
Bse3DI	GCAATG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	30
BseLI	CCNNNNNNNGG	2 cut(s)	188, 217
BseMI	GCAATG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	165
Bsh1285I	CGRYCG	1 cut(s)	215
BshFI	GGCC	1 cut(s)	118
BsiEI	CGRYCG	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	188, 217
BsnI	GGCC	1 cut(s)	118
Bsp1407I	TGTACA	1 cut(s)	60
Bsp1720I	GCTNAGC	1 cut(s)	194
BspACI	CCGC	1 cut(s)	149
BspANI	GGCC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	87
BsrGI	TGTACA	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	45
BssSI	CACGAG	1 cut(s)	15
Bst2BI	CACGAG	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	47
BstAUI	TGTACA	1 cut(s)	60
BstC8I	GCNNGC	2 cut(s)	12, 153
BstDEI	CTNAG	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	30
BstMCI	CGRYCG	1 cut(s)	215
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	172
Cac8I	GCNNGC	2 cut(s)	12, 153
Cfr13I	GGNCC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	6 cut(s)	14, 50, 118, 139, 193, 198
CviKI_1	RGCY	6 cut(s)	14, 50, 118, 139, 193, 198
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	45
FaeI	CATG	1 cut(s)	38
FaiI	YATR	3 cut(s)	36, 93, 142
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FatI	CATG	1 cut(s)	34
FokI	GGATG	1 cut(s)	17
HaeIII	GGCC	1 cut(s)	118
Hin1II	CATG	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HpaI	GTTAAC	1 cut(s)	178
HphI	GGTGA	2 cut(s)	138, 198
Hpy166II	GTNNAC	3 cut(s)	61, 63, 178
Hpy8I	GTNNAC	3 cut(s)	61, 63, 178
HpyAV	CCTTC	1 cut(s)	182
HpyCH4V	TGCA	1 cut(s)	30
HpyF3I	CTNAG	1 cut(s)	194
Hsp92II	CATG	1 cut(s)	38
KspAI	GTTAAC	1 cut(s)	178
LmnI	GCTCC	2 cut(s)	7, 203
LpnPI	CCDG	4 cut(s)	32, 59, 178, 229
LweI	GCATC	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	130, 204
MfeI	CAATTG	1 cut(s)	69
MluCI	AATT	1 cut(s)	69
MnlI	CCTC	2 cut(s)	76, 237
MseI	TTAA	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	47
MunI	CAATTG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	47
NlaIII	CATG	1 cut(s)	38
NmuCI	GTSAC	2 cut(s)	130, 204
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	95
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	177
Sau96I	GGNCC	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	47
SetI	ASST	3 cut(s)	16, 68, 200
SfaNI	GCATC	1 cut(s)	39
SinI	GGWCC	1 cut(s)	95
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	45
TaqII	GACCGA	1 cut(s)	229
TasI	AATT	1 cut(s)	69
TatI	WGTACW	1 cut(s)	60
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	2 cut(s)	130, 204
Tsp45I	GTSAC	2 cut(s)	130, 204
TspRI	CASTG	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.