Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000600.1

Orthogroup ID

OG0002758

Physical Location & Seq

Genomic Coordinates Forward (+)

281316 .. 282998

Gene Structure 1683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000600.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atgacacttaagacaaagcttcactctttaaaaatcaaagatgagcttcaaggtcgtctctctacaaccccacagtatttagcttgttctgtgctgaagagtgacaatttagtttcatcccccggcataattgatccacattggaaagaaatgtatgttttacttcatgaggaggatgatacttttacagatgctttgccagattttatgtctgtatctgatgcaggctttggttcaccaacttcagatacggtttcatgtctaacaactgaggacagcaatgatgctgctggatttgcatctgctaaaggcttagtccttgaaaagaatcttgttacagcaaggtgcatttctgctgaggaattttatgaggcggagggtagtgactattccaattttgtctttctcaccttctcgactctgagttctagttcacctgattatgatggtattgacacacagttgagcatccgtatgtcaaaactggaattcttctgcaacagacctactttggtcgctttaattgattttggcctggacttaagctctgtgtacagtgaggaaaacactgcagacattactgaaggttcaggtgacaaatctttgacgaacaaagaaaagaccgaagaaattgggcgtgtcaaaggcttgctgggttatggtaaaggtcgtgtagtattttatttgaacatgaacgcgtacgtggacagtgtgactgtgtttctcaacaaggaggatgcttctctgcttgcgacgtttgtgcaagaaagttttgtgctagatctgaaggtccacccaagttctctttccattgaaggcaccctaggaaattttagactctgtgatatgtctcttggagaagataactgttgggcctggctatgtgatatacgcaatccagatgtggaatcccttatcaagttcaactttaagtcttacagtgctgaagacgatgattatagtttgtgtggtcaatttgctgctgttcgtattgtcttcctttacagctttgttcaggagataaccgcgtactttatggaacttgctaccctacatattgtggaatgtgttcttatagtctgttttgtcaaggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Chorein_N Pex24p SHR-BD VPS13 VPS13_C VPS13_mid_rpt Vps62

Protein Analysis

365

Amino Acids

40.52

Weight (kDa)

4.43

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48090 AT1G48090 AT1G48090 AT1G48090 AT1G48090 AT1G48090
fragaria_vesca	FvH4_4g20980 FvH4_4g20980
malus_domestica	MD13G1146800.v1.1 MD16G1145300.v1.1 MD16G1145600.v1.1 MD16G1156200.v1.1 MD16G1156300.v1.1 MD16G1156600.v1.1
prunus_persica	Prupe.1G110200_v2.0.a1 Prupe.1G110200_v2.0.a1 Prupe.1G110200_v2.0.a1 Prupe.1G110200_v2.0.a1 Prupe.3G141600_v2.0.a1
pyrus_communis	pycom13g12640 pycom16g12480
rosa_chinensis	RchiOBHm_Chr4g0407731 RchiOBHm_Chr4g0407781 RchiOBHm_Chr4g0426501
rosa_laevigata	RLG00000007293
rosa_multiflora	Rmu_sc0000600.1_g000056 Rmu_sc0001821.1_g000002
rosa_roxburghii	Rroxscaffold_5G00368530
rosa_rugosa	Rorug04G0092700 Rorug04G0212200 Rorug04G0212400 Rorug04G0212400
rosa_samantha	Rh4AG268100 Rh4BG274300 Rh4CG288300 Rh4CG288800 Rh4DG271100
rosa_wichuraiana	Rw4G011930 Rw4G023260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	818
AccII	CGCG	2 cut(s)	698, 1028
AciI	CCGC	2 cut(s)	374, 1026
AclWI	GGATC	1 cut(s)	128
AcsI	RAATTY	3 cut(s)	362, 488, 829
AcuI	CTGAAG	5 cut(s)	116, 228, 603, 806, 966
AfaI	GTAC	3 cut(s)	554, 701, 1031
AflII	CTTAAG	2 cut(s)	8, 541
AflIII	ACRYGT	1 cut(s)	696
AgsI	TTSAA	5 cut(s)	50, 323, 688, 815, 925
AjnI	CCWGG	2 cut(s)	534, 875
AjuI	GAANNNNNNNTTGG	2 cut(s)	790, 822
AluBI	AGCT	5 cut(s)	19, 46, 83, 546, 1008
AluI	AGCT	5 cut(s)	19, 46, 83, 546, 1008
Alw26I	GTCTC	2 cut(s)	62, 855
AlwI	GGATC	1 cut(s)	128
AoxI	GGCC	2 cut(s)	532, 873
ApeKI	GCWGC	2 cut(s)	287, 980
ApoI	RAATTY	3 cut(s)	362, 488, 829
Asp700I	GAANNNNTTC	1 cut(s)	1068
AspA2I	CCTAGG	1 cut(s)	823
AspS9I	GGNCC	2 cut(s)	790, 873
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	4 cut(s)	228, 400, 426, 605
AvaII	GGWCC	1 cut(s)	790
AvrII	CCTAGG	1 cut(s)	823
BanI	GGYRCC	1 cut(s)	818
BbsI	GAAGAC	2 cut(s)	954, 988
BbvCI	CCTCAGC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	274, 967
BccI	CCATC	1 cut(s)	440
BcgI	CGANNNNNNTGC	2 cut(s)	742, 776
BciT130I	CCWGG	2 cut(s)	536, 877
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	62, 855
BfaI	CTAG	3 cut(s)	429, 779, 824
BfmI	CTRYAG	1 cut(s)	570
BfrI	CTTAAG	2 cut(s)	8, 541
BglII	AGATCT	1 cut(s)	781
BisI	GCNGC	2 cut(s)	288, 981
BlnI	CCTAGG	1 cut(s)	823
BlsI	GCNGC	2 cut(s)	289, 982
Bme1390I	CCNGG	3 cut(s)	123, 536, 877
Bme18I	GGWCC	1 cut(s)	790
BmgT120I	GGNCC	2 cut(s)	790, 873
BmiI	GGNNCC	1 cut(s)	820
BmrFI	CCNGG	3 cut(s)	123, 536, 877
BmsI	GCATC	6 cut(s)	181, 211, 274, 308, 477, 727
BpiI	GAAGAC	2 cut(s)	954, 988
Bpu10I	CCTNAGC	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	703
BsaBI	GATNNNNATC	1 cut(s)	298
BsaJI	CCNNGG	2 cut(s)	121, 823
Bse1I	ACTGG	1 cut(s)	489
Bse3DI	GCAATG	1 cut(s)	286
Bse8I	GATNNNNATC	1 cut(s)	298
BseBI	CCWGG	2 cut(s)	536, 877
BseDI	CCNNGG	2 cut(s)	121, 823
BseGI	GGATG	4 cut(s)	116, 181, 468, 742
BseJI	GATNNNNATC	1 cut(s)	298
BseMI	GCAATG	1 cut(s)	286
BseMII	CTCAG	3 cut(s)	261, 348, 413
BseNI	ACTGG	1 cut(s)	489
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	2 cut(s)	274, 967
BseYI	CCCAGC	1 cut(s)	652
Bsh1236I	CGCG	2 cut(s)	698, 1028
BshFI	GGCC	2 cut(s)	534, 875
BshNI	GGYRCC	1 cut(s)	818
BsiSI	CCGG	1 cut(s)	123
BsiWI	CGTACG	1 cut(s)	699
BsmAI	GTCTC	2 cut(s)	62, 855
BsmBI	CGTCTC	1 cut(s)	62
BsnI	GGCC	2 cut(s)	534, 875
Bsp1407I	TGTACA	1 cut(s)	552
Bsp143I	GATC	2 cut(s)	133, 781
BspACI	CCGC	2 cut(s)	374, 1026
BspANI	GGCC	2 cut(s)	534, 875
BspCNI	CTCAG	3 cut(s)	262, 349, 414
BspFNI	CGCG	2 cut(s)	698, 1028
BspHI	TCATGA	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	820
BspMAI	CTGCAG	1 cut(s)	574
BspPI	GGATC	1 cut(s)	128
BspT107I	GGYRCC	1 cut(s)	818
BspTI	CTTAAG	2 cut(s)	8, 541
BsrDI	GCAATG	1 cut(s)	286
BsrGI	TGTACA	1 cut(s)	552
BsrI	ACTGG	1 cut(s)	489
BssECI	CCNNGG	2 cut(s)	121, 823
BssMI	GATC	2 cut(s)	133, 781
BssT1I	CCWWGG	1 cut(s)	823
Bst2UI	CCWGG	2 cut(s)	536, 877
Bst4CI	ACNGT	8 cut(s)	75, 253, 462, 557, 710, 718, 869, 941
Bst6I	CTCTTC	1 cut(s)	92
BstAFI	CTTAAG	2 cut(s)	8, 541
BstAUI	TGTACA	1 cut(s)	552
BstBAI	YACGTR	1 cut(s)	703
BstC8I	GCNNGC	3 cut(s)	226, 650, 750
BstDEI	CTNAG	4 cut(s)	270, 313, 357, 422
BstF5I	GGATG	4 cut(s)	116, 181, 468, 742
BstFNI	CGCG	2 cut(s)	698, 1028
BstKTI	GATC	2 cut(s)	136, 784
BstMAI	GTCTC	2 cut(s)	62, 855
BstMBI	GATC	2 cut(s)	133, 781
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstNI	CCWGG	2 cut(s)	536, 877
BstSCI	CCNGG	3 cut(s)	121, 534, 875
BstSFI	CTRYAG	1 cut(s)	570
BstUI	CGCG	2 cut(s)	698, 1028
BstV1I	GCAGC	2 cut(s)	274, 967
BstV2I	GAAGAC	2 cut(s)	954, 988
BstX2I	RGATCY	1 cut(s)	781
BstYI	RGATCY	1 cut(s)	781
BsuRI	GGCC	2 cut(s)	534, 875
BtsCI	GGATG	4 cut(s)	116, 181, 468, 742
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	4 cut(s)	562, 567, 715, 946
Cac8I	GCNNGC	3 cut(s)	226, 650, 750
CciI	TCATGA	1 cut(s)	166
Cfr13I	GGNCC	2 cut(s)	790, 873
Csp6I	GTAC	3 cut(s)	553, 700, 1030
CviAII	CATG	3 cut(s)	167, 258, 691
CviQI	GTAC	3 cut(s)	553, 700, 1030
DdeI	CTNAG	4 cut(s)	270, 313, 357, 422
DpnI	GATC	2 cut(s)	135, 783
DpnII	GATC	2 cut(s)	133, 781
DraI	TTTAAA	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
EciI	GGCGGA	1 cut(s)	389
Eco130I	CCWWGG	1 cut(s)	823
Eco47I	GGWCC	1 cut(s)	790
Eco57I	CTGAAG	5 cut(s)	116, 228, 603, 806, 966
EcoRI	GAATTC	1 cut(s)	488
EcoRII	CCWGG	2 cut(s)	534, 875
EcoT14I	CCWWGG	1 cut(s)	823
ErhI	CCWWGG	1 cut(s)	823
Esp3I	CGTCTC	1 cut(s)	62
FaeI	CATG	3 cut(s)	170, 261, 694
FalI	AAGNNNNNCTT	4 cut(s)	30, 62, 911, 943
FatI	CATG	3 cut(s)	166, 257, 690
Fnu4HI	GCNGC	2 cut(s)	288, 981
FokI	GGATG	4 cut(s)	103, 188, 455, 749
Fsp4HI	GCNGC	2 cut(s)	288, 981
FspBI	CTAG	3 cut(s)	429, 779, 824
GluI	GCNGC	2 cut(s)	288, 981
GsaI	CCCAGC	1 cut(s)	656
HaeIII	GGCC	2 cut(s)	534, 875
HapII	CCGG	1 cut(s)	123
Hin1II	CATG	3 cut(s)	170, 261, 694
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	4 cut(s)	328, 418, 837, 908
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	4 cut(s)	228, 400, 426, 605
Hpy166II	GTNNAC	5 cut(s)	236, 434, 553, 706, 793
Hpy188I	TCNGA	4 cut(s)	220, 247, 423, 786
Hpy188III	TCNNGA	4 cut(s)	167, 415, 899, 1016
Hpy8I	GTNNAC	5 cut(s)	236, 434, 553, 706, 793
Hpy99I	CGWCG	1 cut(s)	757
HpyAV	CCTTC	4 cut(s)	421, 578, 781, 809
HpyCH4III	ACNGT	8 cut(s)	75, 253, 462, 557, 710, 718, 869, 941
HpyCH4IV	ACGT	2 cut(s)	702, 755
HpyCH4V	TGCA	6 cut(s)	224, 299, 348, 498, 572, 763
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	4 cut(s)	270, 313, 357, 422
HpySE526I	ACGT	2 cut(s)	702, 755
Hsp92II	CATG	3 cut(s)	170, 261, 694
Kzo9I	GATC	2 cut(s)	133, 781
Lsp1109I	GCAGC	2 cut(s)	274, 967
LweI	GCATC	6 cut(s)	181, 211, 274, 308, 477, 727
MaeI	CTAG	3 cut(s)	429, 779, 824
MaeII	ACGT	2 cut(s)	702, 755
MaeIII	GTNAC	5 cut(s)	101, 334, 383, 593, 712
MalI	GATC	2 cut(s)	135, 783
MboI	GATC	2 cut(s)	133, 781
MboII	GAAGA	6 cut(s)	109, 484, 638, 872, 959, 988
MflI	RGATCY	1 cut(s)	781
MluCI	AATT	9 cut(s)	106, 129, 362, 394, 488, 522, 630, 829, 974
MluI	ACGCGT	1 cut(s)	696
MlyI	GAGTC	2 cut(s)	412, 831
MnlI	CCTC	8 cut(s)	163, 166, 265, 352, 364, 370, 553, 727
MroXI	GAANNNNTTC	1 cut(s)	1068
MseI	TTAA	5 cut(s)	9, 29, 521, 542, 930
MslI	CAYNNNNRTG	1 cut(s)	473
MspCI	CTTAAG	2 cut(s)	8, 541
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	3 cut(s)	123, 536, 877
MvaI	CCWGG	2 cut(s)	536, 877
MvnI	CGCG	2 cut(s)	698, 1028
MwoI	GCNNNNNNNGC	1 cut(s)	296
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	2 cut(s)	133, 781
NlaIII	CATG	3 cut(s)	170, 261, 694
NlaIV	GGNNCC	1 cut(s)	820
NmuCI	GTSAC	4 cut(s)	101, 383, 593, 712
PagI	TCATGA	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	1068
PfeI	GAWTC	2 cut(s)	328, 908
Pfl23II	CGTACG	1 cut(s)	699
PkrI	GCNGC	2 cut(s)	289, 982
PleI	GAGTC	2 cut(s)	412, 831
PpsI	GAGTC	2 cut(s)	412, 831
Ppu21I	YACGTR	1 cut(s)	703
Psp6I	CCWGG	2 cut(s)	534, 875
PspFI	CCCAGC	1 cut(s)	652
PspGI	CCWGG	2 cut(s)	534, 875
PspLI	CGTACG	1 cut(s)	699
PspN4I	GGNNCC	1 cut(s)	820
PspPI	GGNCC	2 cut(s)	790, 873
PstI	CTGCAG	1 cut(s)	574
PsuI	RGATCY	1 cut(s)	781
RsaI	GTAC	3 cut(s)	554, 701, 1031
RsaNI	GTAC	3 cut(s)	553, 700, 1030
RseI	CAYNNNNRTG	1 cut(s)	473
SaqAI	TTAA	5 cut(s)	9, 29, 521, 542, 930
SatI	GCNGC	2 cut(s)	288, 981
Sau3AI	GATC	2 cut(s)	133, 781
Sau96I	GGNCC	2 cut(s)	790, 873
SchI	GAGTC	2 cut(s)	412, 831
ScrFI	CCNGG	3 cut(s)	123, 536, 877
SfaNI	GCATC	6 cut(s)	181, 211, 274, 308, 477, 727
SfcI	CTRYAG	1 cut(s)	570
SinI	GGWCC	1 cut(s)	790
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	2 cut(s)	8, 541
SmoI	CTYRAG	2 cut(s)	8, 541
Sse9I	AATT	9 cut(s)	106, 129, 362, 394, 488, 522, 630, 829, 974
SsiI	CCGC	2 cut(s)	374, 1026
SspMI	CTAG	3 cut(s)	429, 779, 824
StyD4I	CCNGG	3 cut(s)	121, 534, 875
StyI	CCWWGG	1 cut(s)	823
TaaI	ACNGT	8 cut(s)	75, 253, 462, 557, 710, 718, 869, 941
TaiI	ACGT	2 cut(s)	705, 758
TaqI	TCGA	1 cut(s)	416
TaqII	GACCGA	1 cut(s)	638
TasI	AATT	9 cut(s)	106, 129, 362, 394, 488, 522, 630, 829, 974
TatI	WGTACW	1 cut(s)	552
TfiI	GAWTC	2 cut(s)	328, 908
Tru1I	TTAA	5 cut(s)	9, 29, 521, 542, 930
Tru9I	TTAA	5 cut(s)	9, 29, 521, 542, 930
TscAI	CASTG	4 cut(s)	562, 574, 715, 946
TseFI	GTSAC	4 cut(s)	101, 383, 593, 712
TseI	GCWGC	2 cut(s)	287, 980
Tsp45I	GTSAC	4 cut(s)	101, 383, 593, 712
TspDTI	ATGAA	4 cut(s)	105, 155, 246, 707
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	4 cut(s)	562, 574, 715, 946
Vha464I	CTTAAG	2 cut(s)	8, 541
VpaK11BI	GGWCC	1 cut(s)	790
XapI	RAATTY	3 cut(s)	362, 488, 829
XmaJI	CCTAGG	1 cut(s)	823
XmnI	GAANNNNTTC	1 cut(s)	1068
XspI	CTAG	3 cut(s)	429, 779, 824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.