Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0013702

Physical Location & Seq

Genomic Coordinates Forward (+)

5398596 .. 5400370

Gene Structure 1775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1066900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAGAATGAAACCCATGCCACTAATATTCTTGTTCACAGTTATTTTGTTGCATCTTCACTCACTGCAGATGCATAGTTTGCCAATTGCACCAGCGCTGTATGTGTTTGAGGATTCACTGTTTGACAGTGGTAACAATAATGTTTTGCCAACTATTTGTAAGGCAGACTATCTGCCTTATGGGGGTAAATGCTTAGATCTAAAAGACCAGATAGATTTGTTTCAACGAACAGATTTGTTTCAACGAACAGTGAAGTCAGACTTGCCAGGACAAATAAAAAATCAAAACGATCTTTTGCAGCACTTGTTCAAATCTATATTTCTGTTTTCTGTTGGCAGCAATGATTTCATCAACAACTACCTCGAACCTGCGGTCTTCGATACAAGCAAGCGCTACTCTCGTCAACAATTTGTACAAGTCTTAATGGATGCAATTGCTCGCCATATGGAGACGCTATACAATTTAGGAGTCAGGAAAACAGTCATGTTTGAAATTGGTCCGCTTGGATGCATCCCGTCAATTTCAAAAGCACAGAATCACAGTGAACTGTGGCTAATGGATGGAAGCAGTCCATGCTGCACTACTTGGGCAAATGGGACTTCAGGGTGCATTCCATTTCTTACACCGTGTTCCGAACCAAATAATCACTTCTTTTGGGATGCTTATCATCTTACTGAATCTGCATATTCAGTTATAGCAACAAGCTGCTTCAATGGTTCAACTGTTTGCACCCCATTAAACATTAAGCAACTCGTGGAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016298 GO:0016787 GO:0016788

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

255

Amino Acids

28.75

Weight (kDa)

6.03

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013702)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46180
malus_domestica	MD09G1076300.v1.1 MD17G1066900.v1.1
prunus_persica	Prupe.3G247700_v2.0.a1
pyrus_communis	pycom09g00360 pycom17g06730
rosa_chinensis	RchiOBHm_Chr2g0164621
rosa_laevigata	RLG00000021471
rosa_roxburghii	Rroxscaffold_2G00086430 Rroxscaffold_2G00086440
rosa_rugosa	Rorug02G0509500
rosa_samantha	Rh2AG577200 Rh2BG588400 Rh2CG559100 Rh2CG559200 Rh2DG598900 Rh2DG599000
rosa_wichuraiana	Rw2G047930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	376
AciI	CCGC	2 cut(s)	371, 500
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	1 cut(s)	414
AfeI	AGCGCT	2 cut(s)	96, 392
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgsI	TTSAA	7 cut(s)	224, 242, 310, 491, 525, 712, 720
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	1 cut(s)	705
AluI	AGCT	1 cut(s)	705
Alw26I	GTCTC	1 cut(s)	443
Aor51HI	AGCGCT	2 cut(s)	96, 392
ApeKI	GCWGC	4 cut(s)	298, 336, 576, 705
ArsI	GACNNNNNNTTYG	2 cut(s)	357, 389
AspLEI	GCGC	2 cut(s)	97, 393
AspS9I	GGNCC	1 cut(s)	497
AvaII	GGWCC	1 cut(s)	497
BauI	CACGAG	1 cut(s)	752
BbsI	GAAGAC	1 cut(s)	367
BbvI	GCAGC	4 cut(s)	310, 348, 563, 692
BccI	CCATC	1 cut(s)	554
BciT130I	CCWGG	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	65
BfoI	RGCGCY	2 cut(s)	98, 394
BfuAI	ACCTGC	1 cut(s)	376
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	4 cut(s)	299, 337, 577, 706
BlsI	GCNGC	4 cut(s)	300, 338, 578, 707
Bme1390I	CCNGG	1 cut(s)	267
Bme18I	GGWCC	1 cut(s)	497
BmgT120I	GGNCC	1 cut(s)	497
BmrFI	CCNGG	1 cut(s)	267
BmsI	GCATC	6 cut(s)	60, 61, 418, 497, 519, 649
BpiI	GAAGAC	1 cut(s)	367
BsaBI	GATNNNNATC	1 cut(s)	663
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse3DI	GCAATG	1 cut(s)	346
Bse8I	GATNNNNATC	1 cut(s)	663
BseBI	CCWGG	1 cut(s)	267
BseGI	GGATG	5 cut(s)	433, 510, 512, 565, 664
BseJI	GATNNNNATC	1 cut(s)	663
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMI	GCAATG	1 cut(s)	346
BseXI	GCAGC	4 cut(s)	310, 348, 563, 692
BsgI	GTGCAG	1 cut(s)	562
BslFI	GGGAC	1 cut(s)	610
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	443
BsmBI	CGTCTC	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	610
BsmI	GAATGC	1 cut(s)	609
Bsp1407I	TGTACA	1 cut(s)	412
Bsp143I	GATC	2 cut(s)	196, 289
BspACI	CCGC	2 cut(s)	371, 500
BspMAI	CTGCAG	1 cut(s)	69
BspMI	ACCTGC	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	346
BsrGI	TGTACA	1 cut(s)	412
BssMI	GATC	2 cut(s)	196, 289
BssSI	CACGAG	1 cut(s)	752
Bst2BI	CACGAG	1 cut(s)	752
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	9 cut(s)	40, 120, 128, 250, 481, 542, 549, 627, 724
BstAPI	GCANNNNNTGC	2 cut(s)	79, 573
BstAUI	TGTACA	1 cut(s)	412
BstC8I	GCNNGC	2 cut(s)	389, 439
BstDEI	CTNAG	1 cut(s)	193
BstF5I	GGATG	5 cut(s)	433, 510, 512, 565, 664
BstH2I	RGCGCY	2 cut(s)	98, 394
BstHHI	GCGC	2 cut(s)	97, 393
BstKTI	GATC	2 cut(s)	199, 292
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	2 cut(s)	196, 289
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 573
BstNI	CCWGG	1 cut(s)	267
BstSCI	CCNGG	1 cut(s)	265
BstSFI	CTRYAG	1 cut(s)	65
BstV1I	GCAGC	4 cut(s)	310, 348, 563, 692
BstV2I	GAAGAC	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BtsCI	GGATG	5 cut(s)	433, 510, 512, 565, 664
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	5 cut(s)	62, 116, 133, 255, 547
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	2 cut(s)	389, 439
CfoI	GCGC	2 cut(s)	97, 393
Cfr13I	GGNCC	1 cut(s)	497
CseI	GACGC	1 cut(s)	460
Csp6I	GTAC	1 cut(s)	413
CviAII	CATG	3 cut(s)	16, 484, 573
CviJI	RGCY	2 cut(s)	553, 705
CviKI_1	RGCY	2 cut(s)	553, 705
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	1 cut(s)	193
DpnI	GATC	2 cut(s)	198, 291
DpnII	GATC	2 cut(s)	196, 289
Eco47I	GGWCC	1 cut(s)	497
Eco47III	AGCGCT	2 cut(s)	96, 392
Eco57I	CTGAAG	1 cut(s)	585
EcoRII	CCWGG	1 cut(s)	265
EcoT22I	ATGCAT	2 cut(s)	75, 512
Esp3I	CGTCTC	1 cut(s)	443
FaeI	CATG	3 cut(s)	19, 487, 576
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	3 cut(s)	15, 483, 572
FauNDI	CATATG	1 cut(s)	444
Fnu4HI	GCNGC	4 cut(s)	299, 337, 577, 706
FokI	GGATG	5 cut(s)	440, 497, 519, 572, 671
Fsp4HI	GCNGC	4 cut(s)	299, 337, 577, 706
GlaI	GCGC	2 cut(s)	96, 392
GluI	GCNGC	4 cut(s)	299, 337, 577, 706
HaeII	RGCGCY	2 cut(s)	98, 394
HgaI	GACGC	1 cut(s)	460
HhaI	GCGC	2 cut(s)	97, 393
Hin1II	CATG	3 cut(s)	19, 487, 576
Hin6I	GCGC	2 cut(s)	95, 391
HinP1I	GCGC	2 cut(s)	95, 391
HincII	GTYRAC	1 cut(s)	404
HindII	GTYRAC	1 cut(s)	404
HinfI	GANTC	4 cut(s)	113, 468, 535, 677
Hpy166II	GTNNAC	3 cut(s)	36, 404, 545
Hpy188I	TCNGA	2 cut(s)	259, 634
Hpy188III	TCNNGA	1 cut(s)	472
Hpy8I	GTNNAC	3 cut(s)	36, 404, 545
HpyCH4III	ACNGT	9 cut(s)	40, 120, 128, 250, 481, 542, 549, 627, 724
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 573
HpyF3I	CTNAG	1 cut(s)	193
Hsp92II	CATG	3 cut(s)	19, 487, 576
HspAI	GCGC	2 cut(s)	95, 391
Kzo9I	GATC	2 cut(s)	196, 289
LpnPI	CCDG	7 cut(s)	105, 221, 252, 279, 381, 457, 588
Lsp1109I	GCAGC	4 cut(s)	310, 348, 563, 692
LweI	GCATC	6 cut(s)	60, 61, 418, 497, 519, 649
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	2 cut(s)	198, 291
MboI	GATC	2 cut(s)	196, 289
MboII	GAAGA	2 cut(s)	47, 367
MfeI	CAATTG	2 cut(s)	84, 432
MflI	RGATCY	1 cut(s)	196
MluCI	AATT	6 cut(s)	84, 407, 432, 460, 492, 519
MlyI	GAGTC	1 cut(s)	477
MnlI	CCTC	2 cut(s)	103, 371
Mph1103I	ATGCAT	2 cut(s)	75, 512
MseI	TTAA	3 cut(s)	422, 737, 744
MspR9I	CCNGG	1 cut(s)	267
MunI	CAATTG	2 cut(s)	84, 432
Mva1269I	GAATGC	1 cut(s)	609
MvaI	CCWGG	1 cut(s)	267
MwoI	GCNNNNNNNGC	2 cut(s)	79, 573
NdeI	CATATG	1 cut(s)	444
NdeII	GATC	2 cut(s)	196, 289
NlaIII	CATG	3 cut(s)	19, 487, 576
NsiI	ATGCAT	2 cut(s)	75, 512
PctI	GAATGC	1 cut(s)	609
PfeI	GAWTC	3 cut(s)	113, 535, 677
PkrI	GCNGC	4 cut(s)	300, 338, 578, 707
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspPI	GGNCC	1 cut(s)	497
PstI	CTGCAG	1 cut(s)	69
PsuI	RGATCY	1 cut(s)	196
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
SaqAI	TTAA	3 cut(s)	422, 737, 744
SatI	GCNGC	4 cut(s)	299, 337, 577, 706
Sau3AI	GATC	2 cut(s)	196, 289
Sau96I	GGNCC	1 cut(s)	497
SchI	GAGTC	1 cut(s)	477
ScrFI	CCNGG	1 cut(s)	267
SetI	ASST	3 cut(s)	363, 370, 707
SfaNI	GCATC	6 cut(s)	60, 61, 418, 497, 519, 649
SfcI	CTRYAG	1 cut(s)	65
SinI	GGWCC	1 cut(s)	497
Sse9I	AATT	6 cut(s)	84, 407, 432, 460, 492, 519
SsiI	CCGC	2 cut(s)	371, 500
SspI	AATATT	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	265
TaaI	ACNGT	9 cut(s)	40, 120, 128, 250, 481, 542, 549, 627, 724
TaqI	TCGA	2 cut(s)	363, 378
TasI	AATT	6 cut(s)	84, 407, 432, 460, 492, 519
TatI	WGTACW	1 cut(s)	412
TfiI	GAWTC	3 cut(s)	113, 535, 677
Tru1I	TTAA	3 cut(s)	422, 737, 744
Tru9I	TTAA	3 cut(s)	422, 737, 744
TscAI	CASTG	5 cut(s)	69, 123, 133, 255, 547
TseI	GCWGC	4 cut(s)	298, 336, 576, 705
TspDTI	ATGAA	2 cut(s)	23, 337
TspRI	CASTG	5 cut(s)	69, 123, 133, 255, 547
VpaK11BI	GGWCC	1 cut(s)	497
Zsp2I	ATGCAT	2 cut(s)	75, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.