Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013702

Physical Location & Seq

Genomic Coordinates Reverse (-)

23833969 .. 23835747

Gene Structure 1779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G247700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTCACTTATTTTCTTGTTCACAATTTCCTTGCACTTTCATTCACTGCAGATTCATGGTTTGCCAATTGCACCAGCATTGTATGTGTTTGGGGATTCTTTGTTTGACAGTGGTAACAATAATTTTTTACCAACTGTTTGTAAGGCAGATTACTTGCCTTATGGGGTGAATTTTGTCAAGGGAGTCACTGGAAGATTTACCAATGGCAGAACAGTGGCAGATTTTATAGCTGAATTTCTTGAGCTACCATATCCTCCACCATACATGAGCATACGTGGATCAAACACAGCACTTAAAGGCCTGAATTATGCATCTGGTTCTTGTGGCATTCTACCTGAAACCGGAAGCCAATTTGGGAAATGCTTGAATCTAAAAGACCAGATAGATTTGTTTCAAAGAACGGTGAAGTCAGACTTGCCAGGACAGTTCCAAAATCCCCATGATCTTCTGCACTACCTATCCAAATCTATATTTCTGTTTTCTATTGGTAGCAATGATTTCATCAATAACTACCTTTACATCAAAGCGTTCGATACAAGTCAACGCTACTCTCCTCAACAATTTGCACAACTCTTAATGGATGCGCTTGCTAACCATTTGGAGAGGATGTACAATTTGGGAGCCAGGAAAATAGTCACGTTTGAAATTGGTCCCCTTGGATGCATTCCATCAATTGCAAAGACACATAACCACAGTGGAAACTGTGTGGAAGATACAAACGTGCTAGCCACAATTTTTAATGAAAATCTTCGTGTGACGCTGGCAAATTTGACAAACACTTTCCAAGGTTCTTTCTTTGTTCTTGGTCGAGCTAATTGGATCGGCTATGATGCAATCACAAGTCCTGTTAAATATGGGCTAATCGATGGAAGCAATCCATGCTGCACTACTTGGGCAGATGGGACTTCAGAGAGCATTCCATTGCTTGCACCATGCTTAGAACCAAACAATTACTTCTTCTGGGATGCTTTCCACCTTACTGAATCTGTATCCTCCGTTATAGCTACAGGCTGCTTCAATGGTTCAACTGTTTGCACCCCCTTAAACATCAAGCAACTTGTAGAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016298 GO:0016787 GO:0016788

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

357

Amino Acids

39.35

Weight (kDa)

5.82

Isoelectric Point (pI)

29.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013702)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46180
malus_domestica	MD09G1076300.v1.1 MD17G1066900.v1.1
prunus_persica	Prupe.3G247700_v2.0.a1
pyrus_communis	pycom09g00360 pycom17g06730
rosa_chinensis	RchiOBHm_Chr2g0164621
rosa_laevigata	RLG00000021471
rosa_roxburghii	Rroxscaffold_2G00086430 Rroxscaffold_2G00086440
rosa_rugosa	Rorug02G0509500
rosa_samantha	Rh2AG577200 Rh2BG588400 Rh2CG559100 Rh2CG559200 Rh2DG598900 Rh2DG599000
rosa_wichuraiana	Rw2G047930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	286, 827
AcsI	RAATTY	3 cut(s)	169, 233, 766
AcuI	CTGAAG	1 cut(s)	891
AfaI	GTAC	1 cut(s)	611
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	5 cut(s)	367, 395, 644, 1018, 1026
AjnI	CCWGG	2 cut(s)	418, 623
AluBI	AGCT	4 cut(s)	230, 244, 812, 1004
AluI	AGCT	4 cut(s)	230, 244, 812, 1004
AlwI	GGATC	2 cut(s)	286, 827
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	2 cut(s)	882, 1011
ApoI	RAATTY	3 cut(s)	169, 233, 766
Asp700I	GAANNNNTTC	1 cut(s)	747
AspLEI	GCGC	1 cut(s)	586
AspS9I	GGNCC	1 cut(s)	650
AsuHPI	GGTGA	2 cut(s)	178, 415
AsuNHI	GCTAGC	1 cut(s)	724
AvaII	GGWCC	1 cut(s)	650
BaeI	ACNNNNGTAYC	2 cut(s)	705, 738
BbvI	GCAGC	2 cut(s)	869, 998
BccI	CCATC	3 cut(s)	676, 860, 893
BciT130I	CCWGG	2 cut(s)	420, 625
BciVI	GTATCC	1 cut(s)	1000
BfaI	CTAG	1 cut(s)	725
BfmI	CTRYAG	2 cut(s)	47, 1005
BfuI	GTATCC	1 cut(s)	1000
BisI	GCNGC	2 cut(s)	883, 1012
BlsI	GCNGC	2 cut(s)	884, 1013
Bme1390I	CCNGG	2 cut(s)	420, 625
Bme18I	GGWCC	1 cut(s)	650
BmgT120I	GGNCC	1 cut(s)	650
BmiI	GGNNCC	2 cut(s)	622, 652
BmrFI	CCNGG	2 cut(s)	420, 625
BmsI	GCATC	5 cut(s)	320, 571, 650, 820, 955
BmtI	GCTAGC	1 cut(s)	728
BpuEI	CTTGAG	1 cut(s)	260
Bsa29I	ATCGAT	1 cut(s)	864
BsaAI	YACGTR	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	655, 784
BsaWI	WCCGGW	1 cut(s)	341
BsaXI	ACNNNNNCTCC	2 cut(s)	593, 623
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	193
Bse3DI	GCAATG	2 cut(s)	499, 920
BseBI	CCWGG	2 cut(s)	420, 625
BseCI	ATCGAT	1 cut(s)	864
BseDI	CCNNGG	2 cut(s)	655, 784
BseGI	GGATG	4 cut(s)	586, 612, 665, 970
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMI	GCAATG	2 cut(s)	499, 920
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	543
BseXI	GCAGC	2 cut(s)	869, 998
BsgI	GTGCAG	2 cut(s)	434, 868
BshFI	GGCC	1 cut(s)	300
BshVI	ATCGAT	1 cut(s)	864
BsiSI	CCGG	1 cut(s)	342
BslFI	GGGAC	2 cut(s)	636, 916
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmFI	GGGAC	2 cut(s)	636, 916
BsmI	GAATGC	3 cut(s)	327, 663, 915
BsnI	GGCC	1 cut(s)	300
Bsp1407I	TGTACA	1 cut(s)	609
Bsp143I	GATC	3 cut(s)	278, 442, 819
BspANI	GGCC	1 cut(s)	300
BspDI	ATCGAT	1 cut(s)	864
BspLI	GGNNCC	2 cut(s)	622, 652
BspMAI	CTGCAG	1 cut(s)	51
BspOI	GCTAGC	1 cut(s)	728
BspPI	GGATC	2 cut(s)	286, 827
BsrDI	GCAATG	2 cut(s)	499, 920
BsrGI	TGTACA	1 cut(s)	609
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	655, 784
BssMI	GATC	3 cut(s)	278, 442, 819
BssT1I	CCWWGG	2 cut(s)	655, 784
Bst2UI	CCWGG	2 cut(s)	420, 625
Bst4CI	ACNGT	8 cut(s)	110, 136, 214, 403, 426, 695, 704, 1030
BstAPI	GCANNNNNTGC	1 cut(s)	879
BstAUI	TGTACA	1 cut(s)	609
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	4 cut(s)	588, 726, 762, 927
BstDEI	CTNAG	1 cut(s)	937
BstF5I	GGATG	4 cut(s)	586, 612, 665, 970
BstHHI	GCGC	1 cut(s)	586
BstKTI	GATC	3 cut(s)	281, 445, 822
BstMBI	GATC	3 cut(s)	278, 442, 819
BstMWI	GCNNNNNNNGC	1 cut(s)	879
BstNI	CCWGG	2 cut(s)	420, 625
BstSCI	CCNGG	2 cut(s)	418, 623
BstSFI	CTRYAG	2 cut(s)	47, 1005
BstV1I	GCAGC	2 cut(s)	869, 998
Bsu15I	ATCGAT	1 cut(s)	864
BsuI	GTATCC	1 cut(s)	1000
BsuRI	GGCC	1 cut(s)	300
BsuTUI	ATCGAT	1 cut(s)	864
BtsCI	GGATG	4 cut(s)	586, 612, 665, 970
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	5 cut(s)	44, 115, 186, 219, 700
Cac8I	GCNNGC	4 cut(s)	588, 726, 762, 927
CfoI	GCGC	1 cut(s)	586
Cfr13I	GGNCC	1 cut(s)	650
ClaI	ATCGAT	1 cut(s)	864
CseI	GACGC	1 cut(s)	766
Csp6I	GTAC	1 cut(s)	610
CviAII	CATG	5 cut(s)	56, 265, 440, 879, 933
CviQI	GTAC	1 cut(s)	610
DdeI	CTNAG	1 cut(s)	937
DpnI	GATC	3 cut(s)	280, 444, 821
DpnII	GATC	3 cut(s)	278, 442, 819
Eco130I	CCWWGG	2 cut(s)	655, 784
Eco147I	AGGCCT	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	650
Eco57I	CTGAAG	1 cut(s)	891
EcoRII	CCWGG	2 cut(s)	418, 623
EcoT14I	CCWWGG	2 cut(s)	655, 784
EcoT22I	ATGCAT	2 cut(s)	313, 665
ErhI	CCWWGG	2 cut(s)	655, 784
FaeI	CATG	5 cut(s)	59, 268, 443, 882, 936
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	2 cut(s)	636, 916
FatI	CATG	5 cut(s)	55, 264, 439, 878, 932
Fnu4HI	GCNGC	2 cut(s)	883, 1012
FokI	GGATG	4 cut(s)	593, 619, 672, 977
Fsp4HI	GCNGC	2 cut(s)	883, 1012
FspBI	CTAG	1 cut(s)	725
GlaI	GCGC	1 cut(s)	585
GluI	GCNGC	2 cut(s)	883, 1012
HaeIII	GGCC	1 cut(s)	300
HapII	CCGG	1 cut(s)	342
HgaI	GACGC	1 cut(s)	766
HhaI	GCGC	1 cut(s)	586
Hin1II	CATG	5 cut(s)	59, 268, 443, 882, 936
Hin6I	GCGC	1 cut(s)	584
HinP1I	GCGC	1 cut(s)	584
HincII	GTYRAC	1 cut(s)	542
HindII	GTYRAC	1 cut(s)	542
HinfI	GANTC	5 cut(s)	52, 95, 183, 367, 983
HpaII	CCGG	1 cut(s)	342
HphI	GGTGA	2 cut(s)	178, 415
Hpy166II	GTNNAC	2 cut(s)	21, 542
Hpy188I	TCNGA	2 cut(s)	412, 910
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	2 cut(s)	21, 542
HpyCH4III	ACNGT	8 cut(s)	110, 136, 214, 403, 426, 695, 704, 1030
HpyCH4IV	ACGT	3 cut(s)	274, 638, 720
HpyF10VI	GCNNNNNNNGC	1 cut(s)	879
HpyF3I	CTNAG	1 cut(s)	937
HpySE526I	ACGT	3 cut(s)	274, 638, 720
Hsp92II	CATG	5 cut(s)	59, 268, 443, 882, 936
HspAI	GCGC	1 cut(s)	584
Kzo9I	GATC	3 cut(s)	278, 442, 819
LmnI	GCTCC	1 cut(s)	620
Lsp1109I	GCAGC	2 cut(s)	869, 998
LweI	GCATC	5 cut(s)	320, 571, 650, 820, 955
MaeI	CTAG	1 cut(s)	725
MaeII	ACGT	3 cut(s)	274, 638, 720
MaeIII	GTNAC	5 cut(s)	3, 113, 184, 634, 754
MalI	GATC	3 cut(s)	280, 444, 821
MboI	GATC	3 cut(s)	278, 442, 819
MboII	GAAGA	5 cut(s)	204, 437, 722, 740, 949
MfeI	CAATTG	2 cut(s)	66, 672
MlyI	GAGTC	1 cut(s)	192
MnlI	CCTC	4 cut(s)	264, 564, 597, 1003
Mph1103I	ATGCAT	2 cut(s)	313, 665
MroXI	GAANNNNTTC	1 cut(s)	747
MseI	TTAA	5 cut(s)	294, 575, 738, 849, 1043
MspI	CCGG	1 cut(s)	342
MspR9I	CCNGG	2 cut(s)	420, 625
MunI	CAATTG	2 cut(s)	66, 672
Mva1269I	GAATGC	3 cut(s)	327, 663, 915
MvaI	CCWGG	2 cut(s)	420, 625
MwoI	GCNNNNNNNGC	1 cut(s)	879
NdeII	GATC	3 cut(s)	278, 442, 819
NheI	GCTAGC	1 cut(s)	724
NlaIII	CATG	5 cut(s)	59, 268, 443, 882, 936
NlaIV	GGNNCC	2 cut(s)	622, 652
NmuCI	GTSAC	4 cut(s)	3, 184, 634, 754
NsiI	ATGCAT	2 cut(s)	313, 665
PceI	AGGCCT	1 cut(s)	300
PctI	GAATGC	3 cut(s)	327, 663, 915
PdmI	GAANNNNTTC	1 cut(s)	747
PfeI	GAWTC	4 cut(s)	52, 95, 367, 983
PkrI	GCNGC	2 cut(s)	884, 1013
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
Ppu21I	YACGTR	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	418, 623
PspGI	CCWGG	2 cut(s)	418, 623
PspN4I	GGNNCC	2 cut(s)	622, 652
PspPI	GGNCC	1 cut(s)	650
PstI	CTGCAG	1 cut(s)	51
RsaI	GTAC	1 cut(s)	611
RsaNI	GTAC	1 cut(s)	610
SaqAI	TTAA	5 cut(s)	294, 575, 738, 849, 1043
SatI	GCNGC	2 cut(s)	883, 1012
Sau3AI	GATC	3 cut(s)	278, 442, 819
Sau96I	GGNCC	1 cut(s)	650
SchI	GAGTC	1 cut(s)	192
ScrFI	CCNGG	2 cut(s)	420, 625
SfaNI	GCATC	5 cut(s)	320, 571, 650, 820, 955
SfcI	CTRYAG	2 cut(s)	47, 1005
SinI	GGWCC	1 cut(s)	650
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
SseBI	AGGCCT	1 cut(s)	300
SspMI	CTAG	1 cut(s)	725
StuI	AGGCCT	1 cut(s)	300
StyD4I	CCNGG	2 cut(s)	418, 623
StyI	CCWWGG	2 cut(s)	655, 784
TaaI	ACNGT	8 cut(s)	110, 136, 214, 403, 426, 695, 704, 1030
TaiI	ACGT	3 cut(s)	277, 641, 723
TaqI	TCGA	3 cut(s)	531, 808, 864
TatI	WGTACW	1 cut(s)	609
TfiI	GAWTC	4 cut(s)	52, 95, 367, 983
Tru1I	TTAA	5 cut(s)	294, 575, 738, 849, 1043
Tru9I	TTAA	5 cut(s)	294, 575, 738, 849, 1043
TscAI	CASTG	5 cut(s)	51, 115, 193, 219, 700
TseFI	GTSAC	4 cut(s)	3, 184, 634, 754
TseI	GCWGC	2 cut(s)	882, 1011
Tsp45I	GTSAC	4 cut(s)	3, 184, 634, 754
TspDTI	ATGAA	4 cut(s)	29, 44, 490, 756
TspGWI	ACGGA	1 cut(s)	985
TspRI	CASTG	5 cut(s)	51, 115, 193, 219, 700
VpaK11BI	GGWCC	1 cut(s)	650
XapI	RAATTY	3 cut(s)	169, 233, 766
XmnI	GAANNNNTTC	1 cut(s)	747
XspI	CTAG	1 cut(s)	725
Zsp2I	ATGCAT	2 cut(s)	313, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.