Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0013702

Physical Location & Seq

Genomic Coordinates Forward (+)

304769 .. 306362

Gene Structure 1594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g00360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAAATCAGTGTCACTTATTTTCTCGTTCATAGTTATGTTCTTGCATTTTCACTCATTGCAGATGCATAGTTTGCCAATTGCACCAGCGCTGTATGTGTTTGGGGATTCACTTTTTGACAGTGGTAACAATAACTTTTTACCAACTATTTGTAAGGCAGACTACTTGCCTTATGGGGTGAATTTTGTTAAGGGAGTCACTGGAAGATTTACCAACGGAAGAACAGTAGCAGATTTTACAGATGAGTTTCTTGGCCTACCATATCCTCCCCCATACATGAGCATACATAGATCGGCGACAGCGCTTACAGGCCTGAATTATGCATCTGGCTCTTGTGGCATTCTGCCAGAAACTGGAAGCCAATATGGAAAATGTTTGAATCTAAAGGACCAGATGGATTTGTTTCGAAGAACCGTGAAGTCGGACTTGCCAGGACAAATAAAAAATCAAACTGATCTTCTGCAGTACTTGTCCAAATCTATATTTCTGTTTTCTGTTGGCAGCAATGATTTCATCAACAACTACCTCGAACCTGAAGTTTTCGATACAAGCAAACGCTACTCTCCTCAACAATTTGCACAGATCTTAATGGTTACAATTGCTCATCATATGGAGAGGTTATACAACCTAGGAGCCAGGAAAGTAGTCATGTTTGAAATTGGTCCACTTGGATGCATTCCATCCATTGCAAAAACACACAAACACAGTGGAAACTGTGTGGAAAGTACAAATGAGCTAGCCTCGATTTTCAATGACAAGCTTCGTGCAACACTTGCGAATTTAACAACCACTTTCCAAGGTTCTTTCTTTGTTCTCGGTCGAGCAAACTGGATTGGCTACGATGCAATTACAAGTCCTGTTAAATATGGGCTAATGGATGGAAGCAATCCATGCTGTACTACTTGGGAAAATGGGACTTCAGGGTGCATTCCATTGCTTAGACCGTGCTTCGAACCAAATAACCACTTCTTTTGGGATGCTTATCATCTAACGGAATATGCAGGCTCAGTTATAGCAACAGGTTGCTTCAATGGCTCAACCGTTTGCACCCCTTTAAACATTAAGCAACTTGTGAAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016298 GO:0016787 GO:0016788

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

361

Amino Acids

40.0

Weight (kDa)

7.55

Isoelectric Point (pI)

34.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013702)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46180
malus_domestica	MD09G1076300.v1.1 MD17G1066900.v1.1
prunus_persica	Prupe.3G247700_v2.0.a1
pyrus_communis	pycom09g00360 pycom17g06730
rosa_chinensis	RchiOBHm_Chr2g0164621
rosa_laevigata	RLG00000021471
rosa_roxburghii	Rroxscaffold_2G00086430 Rroxscaffold_2G00086440
rosa_rugosa	Rorug02G0509500
rosa_samantha	Rh2AG577200 Rh2BG588400 Rh2CG559100 Rh2CG559200 Rh2DG598900 Rh2DG599000
rosa_wichuraiana	Rw2G047930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	353
AcsI	RAATTY	2 cut(s)	181, 778
AcuI	CTGAAG	2 cut(s)	555, 903
AfaI	GTAC	3 cut(s)	467, 727, 898
AfeI	AGCGCT	2 cut(s)	90, 303
AfiI	CCNNNNNNNGG	1 cut(s)	353
AgsI	TTSAA	4 cut(s)	379, 656, 751, 1030
AjnI	CCWGG	2 cut(s)	430, 635
AluBI	AGCT	2 cut(s)	736, 760
AluI	AGCT	2 cut(s)	736, 760
AlwNI	CAGNNNCTG	1 cut(s)	353
Aor51HI	AGCGCT	2 cut(s)	90, 303
AoxI	GGCC	2 cut(s)	253, 310
ApeKI	GCWGC	1 cut(s)	501
ApoI	RAATTY	2 cut(s)	181, 778
AspA2I	CCTAGG	1 cut(s)	628
AspLEI	GCGC	2 cut(s)	91, 304
AspS9I	GGNCC	2 cut(s)	388, 662
AsuHPI	GGTGA	1 cut(s)	190
AsuII	TTCGAA	2 cut(s)	406, 951
AsuNHI	GCTAGC	1 cut(s)	736
AvaII	GGWCC	2 cut(s)	388, 662
AvrII	CCTAGG	1 cut(s)	628
BbvI	GCAGC	1 cut(s)	513
BccI	CCATC	3 cut(s)	388, 688, 872
BciT130I	CCWGG	2 cut(s)	432, 637
BfaI	CTAG	2 cut(s)	629, 737
BfmI	CTRYAG	1 cut(s)	461
BfoI	RGCGCY	2 cut(s)	92, 305
BglII	AGATCT	1 cut(s)	582
BisI	GCNGC	1 cut(s)	502
BlnI	CCTAGG	1 cut(s)	628
BlsI	GCNGC	1 cut(s)	503
BmcAI	AGTACT	1 cut(s)	467
Bme1390I	CCNGG	2 cut(s)	432, 637
Bme18I	GGWCC	2 cut(s)	388, 662
BmgT120I	GGNCC	2 cut(s)	388, 662
BmiI	GGNNCC	1 cut(s)	634
BmrFI	CCNGG	2 cut(s)	432, 637
BmsI	GCATC	5 cut(s)	54, 332, 662, 832, 967
BmtI	GCTAGC	1 cut(s)	740
BplI	GAGNNNNNCTC	2 cut(s)	725, 757
Bpu14I	TTCGAA	2 cut(s)	406, 951
BsaBI	GATNNNNATC	1 cut(s)	981
BsaJI	CCNNGG	2 cut(s)	628, 796
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse1I	ACTGG	3 cut(s)	205, 358, 833
Bse3DI	GCAATG	4 cut(s)	56, 511, 684, 932
Bse8I	GATNNNNATC	1 cut(s)	981
BseBI	CCWGG	2 cut(s)	432, 637
BseDI	CCNNGG	2 cut(s)	628, 796
BseGI	GGATG	4 cut(s)	677, 680, 883, 982
BseJI	GATNNNNATC	1 cut(s)	981
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMI	GCAATG	4 cut(s)	56, 511, 684, 932
BseMII	CTCAG	1 cut(s)	1020
BseNI	ACTGG	3 cut(s)	205, 358, 833
BseRI	GAGGAG	1 cut(s)	555
BseXI	GCAGC	1 cut(s)	513
Bsh1285I	CGRYCG	1 cut(s)	820
BshFI	GGCC	2 cut(s)	255, 312
BsiEI	CGRYCG	1 cut(s)	820
BslFI	GGGAC	1 cut(s)	928
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	928
BsmI	GAATGC	3 cut(s)	339, 675, 927
BsnI	GGCC	2 cut(s)	255, 312
Bsp119I	TTCGAA	2 cut(s)	406, 951
Bsp143I	GATC	3 cut(s)	290, 454, 582
BspANI	GGCC	2 cut(s)	255, 312
BspCNI	CTCAG	1 cut(s)	1019
BspLI	GGNNCC	1 cut(s)	634
BspMAI	CTGCAG	1 cut(s)	465
BspOI	GCTAGC	1 cut(s)	740
BspT104I	TTCGAA	2 cut(s)	406, 951
BsrDI	GCAATG	4 cut(s)	56, 511, 684, 932
BsrI	ACTGG	3 cut(s)	205, 358, 833
BssECI	CCNNGG	2 cut(s)	628, 796
BssMI	GATC	3 cut(s)	290, 454, 582
BssT1I	CCWWGG	2 cut(s)	628, 796
Bst2UI	CCWGG	2 cut(s)	432, 637
Bst4CI	ACNGT	7 cut(s)	122, 226, 415, 707, 716, 945, 1042
BstAPI	GCANNNNNTGC	3 cut(s)	73, 773, 891
BstBI	TTCGAA	2 cut(s)	406, 951
BstC8I	GCNNGC	2 cut(s)	738, 1003
BstDEI	CTNAG	2 cut(s)	938, 1006
BstF5I	GGATG	4 cut(s)	677, 680, 883, 982
BstH2I	RGCGCY	2 cut(s)	92, 305
BstHHI	GCGC	2 cut(s)	91, 304
BstKTI	GATC	3 cut(s)	293, 457, 585
BstMBI	GATC	3 cut(s)	290, 454, 582
BstMCI	CGRYCG	1 cut(s)	820
BstMWI	GCNNNNNNNGC	5 cut(s)	73, 336, 773, 891, 1032
BstNI	CCWGG	2 cut(s)	432, 637
BstSCI	CCNGG	2 cut(s)	430, 635
BstSFI	CTRYAG	1 cut(s)	461
BstV1I	GCAGC	1 cut(s)	513
BstX2I	RGATCY	1 cut(s)	582
BstYI	RGATCY	1 cut(s)	582
BsuRI	GGCC	2 cut(s)	255, 312
BtsCI	GGATG	4 cut(s)	677, 680, 883, 982
BtsIMutI	CAGTG	4 cut(s)	15, 127, 198, 712
Cac8I	GCNNGC	2 cut(s)	738, 1003
CaiI	CAGNNNCTG	1 cut(s)	353
CfoI	GCGC	2 cut(s)	91, 304
Cfr13I	GGNCC	2 cut(s)	388, 662
Csp6I	GTAC	3 cut(s)	466, 726, 897
CspCI	CAANNNNNGTGG	4 cut(s)	688, 723, 953, 988
CviAII	CATG	3 cut(s)	277, 649, 891
CviQI	GTAC	3 cut(s)	466, 726, 897
DdeI	CTNAG	2 cut(s)	938, 1006
DpnI	GATC	3 cut(s)	292, 456, 584
DpnII	GATC	3 cut(s)	290, 454, 582
DraI	TTTAAA	1 cut(s)	1056
Eco130I	CCWWGG	2 cut(s)	628, 796
Eco147I	AGGCCT	1 cut(s)	312
Eco47I	GGWCC	2 cut(s)	388, 662
Eco47III	AGCGCT	2 cut(s)	90, 303
Eco57I	CTGAAG	2 cut(s)	555, 903
EcoRII	CCWGG	2 cut(s)	430, 635
EcoT14I	CCWWGG	2 cut(s)	628, 796
EcoT22I	ATGCAT	3 cut(s)	69, 325, 677
ErhI	CCWWGG	2 cut(s)	628, 796
FaeI	CATG	3 cut(s)	280, 652, 894
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FaqI	GGGAC	1 cut(s)	928
FatI	CATG	3 cut(s)	276, 648, 890
FauNDI	CATATG	1 cut(s)	609
Fnu4HI	GCNGC	1 cut(s)	502
FokI	GGATG	4 cut(s)	667, 684, 890, 989
Fsp4HI	GCNGC	1 cut(s)	502
FspBI	CTAG	2 cut(s)	629, 737
GlaI	GCGC	2 cut(s)	90, 303
GluI	GCNGC	1 cut(s)	502
HaeII	RGCGCY	2 cut(s)	92, 305
HaeIII	GGCC	2 cut(s)	255, 312
HhaI	GCGC	2 cut(s)	91, 304
Hin1II	CATG	3 cut(s)	280, 652, 894
Hin6I	GCGC	2 cut(s)	89, 302
HinP1I	GCGC	2 cut(s)	89, 302
HindIII	AAGCTT	1 cut(s)	758
HinfI	GANTC	3 cut(s)	107, 195, 379
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	1 cut(s)	665
Hpy188I	TCNGA	1 cut(s)	424
Hpy8I	GTNNAC	1 cut(s)	665
HpyCH4III	ACNGT	7 cut(s)	122, 226, 415, 707, 716, 945, 1042
HpyF10VI	GCNNNNNNNGC	5 cut(s)	73, 336, 773, 891, 1032
HpyF3I	CTNAG	2 cut(s)	938, 1006
Hsp92II	CATG	3 cut(s)	280, 652, 894
HspAI	GCGC	2 cut(s)	89, 302
Kzo9I	GATC	3 cut(s)	290, 454, 582
LmnI	GCTCC	1 cut(s)	632
Lsp1109I	GCAGC	1 cut(s)	513
LweI	GCATC	5 cut(s)	54, 332, 662, 832, 967
MaeI	CTAG	2 cut(s)	629, 737
MaeIII	GTNAC	4 cut(s)	12, 125, 196, 592
MalI	GATC	3 cut(s)	292, 456, 584
MboI	GATC	3 cut(s)	290, 454, 582
MboII	GAAGA	4 cut(s)	216, 231, 420, 449
MfeI	CAATTG	2 cut(s)	78, 597
MflI	RGATCY	1 cut(s)	582
MluCI	AATT	8 cut(s)	78, 181, 316, 572, 597, 657, 778, 846
MlyI	GAGTC	1 cut(s)	204
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	5 cut(s)	276, 536, 576, 609, 751
Mph1103I	ATGCAT	3 cut(s)	69, 325, 677
MseI	TTAA	6 cut(s)	189, 587, 782, 861, 1055, 1062
MslI	CAYNNNNRTG	2 cut(s)	35, 670
MspR9I	CCNGG	2 cut(s)	432, 637
MunI	CAATTG	2 cut(s)	78, 597
Mva1269I	GAATGC	3 cut(s)	339, 675, 927
MvaI	CCWGG	2 cut(s)	432, 637
MwoI	GCNNNNNNNGC	5 cut(s)	73, 336, 773, 891, 1032
NdeI	CATATG	1 cut(s)	609
NdeII	GATC	3 cut(s)	290, 454, 582
NheI	GCTAGC	1 cut(s)	736
NlaIII	CATG	3 cut(s)	280, 652, 894
NlaIV	GGNNCC	1 cut(s)	634
NmuCI	GTSAC	2 cut(s)	12, 196
NsiI	ATGCAT	3 cut(s)	69, 325, 677
NspV	TTCGAA	2 cut(s)	406, 951
PceI	AGGCCT	1 cut(s)	312
PctI	GAATGC	3 cut(s)	339, 675, 927
PfeI	GAWTC	2 cut(s)	107, 379
PflMI	CCANNNNNTGG	1 cut(s)	353
PkrI	GCNGC	1 cut(s)	503
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
Psp6I	CCWGG	2 cut(s)	430, 635
PspGI	CCWGG	2 cut(s)	430, 635
PspN4I	GGNNCC	1 cut(s)	634
PspPI	GGNCC	2 cut(s)	388, 662
PstI	CTGCAG	1 cut(s)	465
PstNI	CAGNNNCTG	1 cut(s)	353
PsuI	RGATCY	1 cut(s)	582
RsaI	GTAC	3 cut(s)	467, 727, 898
RsaNI	GTAC	3 cut(s)	466, 726, 897
RseI	CAYNNNNRTG	2 cut(s)	35, 670
SaqAI	TTAA	6 cut(s)	189, 587, 782, 861, 1055, 1062
SatI	GCNGC	1 cut(s)	502
Sau3AI	GATC	3 cut(s)	290, 454, 582
Sau96I	GGNCC	2 cut(s)	388, 662
ScaI	AGTACT	1 cut(s)	467
SchI	GAGTC	1 cut(s)	204
ScrFI	CCNGG	2 cut(s)	432, 637
SetI	ASST	8 cut(s)	528, 535, 620, 630, 738, 762, 802, 1024
SfaNI	GCATC	5 cut(s)	54, 332, 662, 832, 967
SfcI	CTRYAG	1 cut(s)	461
SfuI	TTCGAA	2 cut(s)	406, 951
SinI	GGWCC	2 cut(s)	388, 662
SmiMI	CAYNNNNRTG	2 cut(s)	35, 670
Sse9I	AATT	8 cut(s)	78, 181, 316, 572, 597, 657, 778, 846
SseBI	AGGCCT	1 cut(s)	312
SspMI	CTAG	2 cut(s)	629, 737
StuI	AGGCCT	1 cut(s)	312
StyD4I	CCNGG	2 cut(s)	430, 635
StyI	CCWWGG	2 cut(s)	628, 796
TaaI	ACNGT	7 cut(s)	122, 226, 415, 707, 716, 945, 1042
TaqI	TCGA	6 cut(s)	406, 528, 543, 743, 820, 951
TaqII	GACCGA	1 cut(s)	806
TasI	AATT	8 cut(s)	78, 181, 316, 572, 597, 657, 778, 846
TatI	WGTACW	3 cut(s)	465, 725, 896
TfiI	GAWTC	2 cut(s)	107, 379
Tru1I	TTAA	6 cut(s)	189, 587, 782, 861, 1055, 1062
Tru9I	TTAA	6 cut(s)	189, 587, 782, 861, 1055, 1062
TscAI	CASTG	4 cut(s)	15, 127, 205, 712
TseFI	GTSAC	2 cut(s)	12, 196
TseI	GCWGC	1 cut(s)	501
Tsp45I	GTSAC	2 cut(s)	12, 196
TspDTI	ATGAA	3 cut(s)	17, 19, 502
TspGWI	ACGGA	2 cut(s)	231, 1007
TspRI	CASTG	4 cut(s)	15, 127, 205, 712
Van91I	CCANNNNNTGG	1 cut(s)	353
VpaK11BI	GGWCC	2 cut(s)	388, 662
XapI	RAATTY	2 cut(s)	181, 778
XmaJI	CCTAGG	1 cut(s)	628
XspI	CTAG	2 cut(s)	629, 737
ZrmI	AGTACT	1 cut(s)	467
Zsp2I	ATGCAT	3 cut(s)	69, 325, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.