Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0013702

Physical Location & Seq

Genomic Coordinates Reverse (-)

83109015 .. 83118513

Gene Structure 9499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG598900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCTTATGTTCTTTAATTATTGTGCTCATGTATCGTCAAAATTTCAACAAGTCACCGAAATCAAACCGTCCGGCAACTTCATCAATGCGCCCAAGAGAAGAGGAAAGCACCTGCACTCTGCACTCTACAATCCGCTGATCACATCAATAACAAATCCCCAGCACCAAATTCAAGCTGAGTTTCTTGGGCTACCGTACGCTCCACCGTACTTGAGCATACATGAATCAACAATACTTACCGGCCTGAATTATGCATCTGGGTCTTGTGGCATTCTCCCGGATACTGGAAGCCGATTGGTAAGAATTAGCGGCAATGATTATCTTAATAATTACCTTCAGCCTAAACTTTATAACACAAGCAAACGCTACCCTCCTCCACAGTATGCACAACTCTTGATGGATGCTCTTTCTCACCAGTTTGAGGGCATTGAGGACGGAAGCAATCCATGCTGCACAGGTTGGTTACGGCAGGGGAACATCGGCCTGTACTCCATTGGCTATACCATGCTCTCAACCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016298 GO:0016787 GO:0016788

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

173

Amino Acids

19.35

Weight (kDa)

8.87

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013702)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46180
malus_domestica	MD09G1076300.v1.1 MD17G1066900.v1.1
prunus_persica	Prupe.3G247700_v2.0.a1
pyrus_communis	pycom09g00360 pycom17g06730
rosa_chinensis	RchiOBHm_Chr2g0164621
rosa_laevigata	RLG00000021471
rosa_roxburghii	Rroxscaffold_2G00086430 Rroxscaffold_2G00086440
rosa_rugosa	Rorug02G0509500
rosa_samantha	Rh2AG577200 Rh2BG588400 Rh2CG559100 Rh2CG559200 Rh2DG598900 Rh2DG599000
rosa_wichuraiana	Rw2G047930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	351
AarI	CACCTGC	1 cut(s)	120
Acc36I	ACCTGC	1 cut(s)	120
AciI	CCGC	2 cut(s)	134, 309
AcsI	RAATTY	2 cut(s)	41, 168
AcuI	CTGAAG	1 cut(s)	320
AfaI	GTAC	3 cut(s)	197, 209, 488
AfiI	CCNNNNNNNGG	2 cut(s)	284, 421
AgsI	TTSAA	2 cut(s)	47, 173
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
Alw21I	GWGCWC	1 cut(s)	28
AoxI	GGCC	2 cut(s)	241, 481
ApeKI	GCWGC	1 cut(s)	450
ApoI	RAATTY	2 cut(s)	41, 168
AspLEI	GCGC	1 cut(s)	91
AsuC2I	CCSGG	1 cut(s)	278
AsuHPI	GGTGA	2 cut(s)	46, 404
Bbv12I	GWGCWC	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	437
BccI	CCATC	1 cut(s)	391
BceAI	ACGGC	1 cut(s)	482
BciVI	GTATCC	1 cut(s)	274
BclI	TGATCA	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	278
BfuAI	ACCTGC	1 cut(s)	120
BfuI	GTATCC	1 cut(s)	274
BisI	GCNGC	2 cut(s)	310, 451
BlsI	GCNGC	2 cut(s)	311, 452
Bme1390I	CCNGG	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	2 cut(s)	263, 391
BpuEI	CTTGAG	1 cut(s)	232
BpuMI	CCSGG	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 421
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	2 cut(s)	289, 415
Bse3DI	GCAATG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	2 cut(s)	284, 421
BseMI	GCAATG	1 cut(s)	319
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	2 cut(s)	289, 415
BseRI	GAGGAG	1 cut(s)	363
BseXI	GCAGC	1 cut(s)	437
BseYI	CCCAGC	1 cut(s)	159
BsgI	GTGCAG	3 cut(s)	98, 105, 436
BshFI	GGCC	2 cut(s)	243, 483
BsiHKAI	GWGCWC	1 cut(s)	28
BsiSI	CCGG	3 cut(s)	72, 240, 278
BsiWI	CGTACG	1 cut(s)	195
BslI	CCNNNNNNNGG	2 cut(s)	284, 421
BsmI	GAATGC	1 cut(s)	270
BsnI	GGCC	2 cut(s)	243, 483
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp143I	GATC	1 cut(s)	138
BspACI	CCGC	2 cut(s)	134, 309
BspANI	GGCC	2 cut(s)	243, 483
BspCNI	CTCAG	1 cut(s)	169
BspMI	ACCTGC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	319
BsrFI	RCCGGY	1 cut(s)	239
BsrI	ACTGG	2 cut(s)	289, 415
BssAI	RCCGGY	1 cut(s)	239
BssMI	GATC	1 cut(s)	138
Bst4CI	ACNGT	4 cut(s)	69, 195, 207, 381
Bst6I	CTCTTC	1 cut(s)	94
BstAPI	GCANNNNNTGC	1 cut(s)	447
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	406
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	1 cut(s)	447
BstSCI	CCNGG	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	437
BsuI	GTATCC	1 cut(s)	274
BsuRI	GGCC	2 cut(s)	243, 483
BtsCI	GGATG	1 cut(s)	406
BveI	ACCTGC	1 cut(s)	120
CfoI	GCGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	239
Csp6I	GTAC	3 cut(s)	196, 208, 487
CspCI	CAANNNNNGTGG	2 cut(s)	192, 227
CviAII	CATG	4 cut(s)	29, 221, 447, 505
CviJI	RGCY	7 cut(s)	176, 190, 243, 291, 340, 483, 498
CviKI_1	RGCY	7 cut(s)	176, 190, 243, 291, 340, 483, 498
CviQI	GTAC	3 cut(s)	196, 208, 487
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	320
EcoT22I	ATGCAT	1 cut(s)	256
FaeI	CATG	4 cut(s)	32, 224, 450, 508
FatI	CATG	4 cut(s)	28, 220, 446, 504
FbaI	TGATCA	1 cut(s)	138
Fnu4HI	GCNGC	2 cut(s)	310, 451
FokI	GGATG	1 cut(s)	413
Fsp4HI	GCNGC	2 cut(s)	310, 451
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	2 cut(s)	310, 451
GsaI	CCCAGC	1 cut(s)	163
HaeIII	GGCC	2 cut(s)	243, 483
HapII	CCGG	3 cut(s)	72, 240, 278
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	4 cut(s)	32, 224, 450, 508
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HinfI	GANTC	1 cut(s)	224
HpaII	CCGG	3 cut(s)	72, 240, 278
HphI	GGTGA	2 cut(s)	46, 404
Hpy188III	TCNNGA	1 cut(s)	394
HpyAV	CCTTC	1 cut(s)	344
HpyCH4III	ACNGT	4 cut(s)	69, 195, 207, 381
HpyCH4V	TGCA	5 cut(s)	115, 122, 254, 386, 453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	447
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	4 cut(s)	32, 224, 450, 508
HspAI	GCGC	1 cut(s)	89
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	1 cut(s)	205
Lsp1109I	GCAGC	1 cut(s)	437
LweI	GCATC	2 cut(s)	263, 391
MaeIII	GTNAC	2 cut(s)	52, 462
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	28
MluCI	AATT	6 cut(s)	16, 41, 168, 247, 303, 328
MnlI	CCTC	5 cut(s)	95, 381, 384, 415, 424
Mph1103I	ATGCAT	1 cut(s)	256
MseI	TTAA	2 cut(s)	15, 324
MspA1I	CMGCKG	1 cut(s)	136
MspI	CCGG	3 cut(s)	72, 240, 278
MspR9I	CCNGG	1 cut(s)	278
Mva1269I	GAATGC	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	447
NciI	CCSGG	1 cut(s)	278
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	4 cut(s)	32, 224, 450, 508
NmuCI	GTSAC	1 cut(s)	52
NsiI	ATGCAT	1 cut(s)	256
PaqCI	CACCTGC	1 cut(s)	120
PctI	GAATGC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	224
Pfl23II	CGTACG	1 cut(s)	195
PfoI	TCCNGGA	1 cut(s)	276
PkrI	GCNGC	2 cut(s)	311, 452
PsiI	TTATAA	1 cut(s)	351
PspFI	CCCAGC	1 cut(s)	159
PspLI	CGTACG	1 cut(s)	195
RsaI	GTAC	3 cut(s)	197, 209, 488
RsaNI	GTAC	3 cut(s)	196, 208, 487
SaqAI	TTAA	2 cut(s)	15, 324
SatI	GCNGC	2 cut(s)	310, 451
Sau3AI	GATC	1 cut(s)	138
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	28
SetI	ASST	4 cut(s)	114, 178, 336, 460
SfaNI	GCATC	2 cut(s)	263, 391
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
Sse9I	AATT	6 cut(s)	16, 41, 168, 247, 303, 328
SsiI	CCGC	2 cut(s)	134, 309
StyD4I	CCNGG	1 cut(s)	276
TaaI	ACNGT	4 cut(s)	69, 195, 207, 381
TasI	AATT	6 cut(s)	16, 41, 168, 247, 303, 328
TatI	WGTACW	1 cut(s)	486
TauI	GCSGC	1 cut(s)	312
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	2 cut(s)	15, 324
Tru9I	TTAA	2 cut(s)	15, 324
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	450
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	70, 237
TspGWI	ACGGA	1 cut(s)	450
XapI	RAATTY	2 cut(s)	41, 168
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.