Rh2CG559200

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013702
Physical Location & Seq
Reverse (-)
73728317 .. 73730015
1699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG559200.1

Sequence Viewer

Length: 1065 bp
ATGGGAATCAAACTATCAATTTCATCACTTATTTTTCTGTTCTTGAGTTTTGCAAATTTTGGCTCAGTTTTAATTGATGGATCGCCGATTGCACCAGCATTATACGTGTTTGGGGATTCTTTGTTTGATAGTGGTAACAATAATTTCTTGCCAACTTTAGCAAAGGCAGATTTCCTGCCCTATGGCGTCAATTTTGCGAAGGGTGTCACCGGAAGATTTACCAACGCTGAGTTTCTTGGGCTACCATACGCTCCACCATGCTTGAGCATACACAAATCGACAATACTTACCGGCCTGAATTATGCATCTGGGTCTTGTGGCATTCTCCCGGAAACCGGAAGCCAATTGGGGAAGTGCTTGAATCTGAAAGAGCAGATGGATTTGTTTGAAAAAACGGTGAGGTCAGACTTGTCACGACATTTCAAAAATCCCAATGATCTTGCGGAGTACTTGTCCAAGTCCATATTTATAGTTTCTGTAGGCAACAATGATTTTCTTAATAATTACCTTCAACCTAAACTCTATAACACAAGCAAACGCTACCCTTCTCCACAGTTTGCACAACTCTTGATGGATAATCTTTCTCACCATTTTGAGAGATTATATAACTTAGGAGCCAGGAAAATAGTTATGTTTGAAATTGGTCCCCTTGGTTGCACCCCATCAATTGCAAAGACACAAAGCCATAGTGGAAACTGTGCTGAAGGAACAAACAAGCTCGCCTCGATTTTTAACGACAAACTTCGTGCAACTCTCGCAAATTTAACTTTCACTTTTCAAGGATCTTTATTTGTTCTTGGTCGAGCTAACGGGATCGGCTATGATGCAATTACAAGTCCCCTCAAATATGGCCTCGAGGACGGAAGCAATCCATGCTGCACAACTTGGAACAATGGGACATCGGCATGTATTCCATGGGCTAAACCATGCTTTCAACCAAATAGTCACTTCTTCTGGGACGCTTTTCATCTGACTGAATCTGCTAGTTCAGTCATAGCAACTGGCTGTTTCAATGATACAACTGTTTGCACTCCACTAAACATCAAGAAACTTGTACAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016298 GO:0016787 GO:0016788
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

354

Amino Acids

38.65

Weight (kDa)

8.23

Isoelectric Point (pI)

29.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 34 - 333 5.1e-23 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 854
AciI CCGC 1 cut(s) 443
AclWI GGATC 3 cut(s) 88, 790, 821
AcsI RAATTY 2 cut(s) 55, 760
AcuI CTGAAG 1 cut(s) 723
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 2 cut(s) 449, 1056
AfiI CCNNNNNNNGG 1 cut(s) 335
AflIII ACRYGT 1 cut(s) 105
AgsI TTSAA 8 cut(s) 361, 389, 424, 512, 638, 779, 935, 1012
AjnI CCWGG 1 cut(s) 617
AluBI AGCT 2 cut(s) 718, 806
AluI AGCT 2 cut(s) 718, 806
AlwI GGATC 3 cut(s) 88, 790, 821
Ama87I CYCGRG 1 cut(s) 854
AoxI GGCC 2 cut(s) 292, 850
ApeKI GCWGC 1 cut(s) 876
ApoI RAATTY 2 cut(s) 55, 760
AspS9I GGNCC 1 cut(s) 644
AsuC2I CCSGG 1 cut(s) 329
AsuHPI GGTGA 3 cut(s) 199, 409, 578
AvaI CYCGRG 1 cut(s) 854
AvaII GGWCC 1 cut(s) 644
BaeI ACNNNNGTAYC 2 cut(s) 1008, 1041
BbvI GCAGC 1 cut(s) 863
BccI CCATC 4 cut(s) 71, 370, 565, 670
BciT130I CCWGG 1 cut(s) 619
BcnI CCSGG 1 cut(s) 329
BfaI CTAG 1 cut(s) 984
BfmI CTRYAG 1 cut(s) 477
BisI GCNGC 1 cut(s) 877
BlsI GCNGC 1 cut(s) 878
BmcAI AGTACT 1 cut(s) 449
Bme1390I CCNGG 2 cut(s) 329, 619
Bme18I GGWCC 1 cut(s) 644
BmeT110I CYCGRG 1 cut(s) 854
BmgT120I GGNCC 1 cut(s) 644
BmiI GGNNCC 2 cut(s) 616, 646
BmrFI CCNGG 2 cut(s) 329, 619
BmsI GCATC 2 cut(s) 314, 814
BpuEI CTTGAG 2 cut(s) 64, 283
BpuMI CCSGG 1 cut(s) 329
BsaAI YACGTR 1 cut(s) 106
BsaHI GRCGYC 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 649, 914
BsaWI WCCGGW 2 cut(s) 209, 335
BsaXI ACNNNNNCTCC 2 cut(s) 437, 467
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 1006
BseBI CCWGG 1 cut(s) 619
BseDI CCNNGG 2 cut(s) 649, 914
BseLI CCNNNNNNNGG 1 cut(s) 335
BseMII CTCAG 2 cut(s) 78, 219
BseNI ACTGG 1 cut(s) 1006
BseXI GCAGC 1 cut(s) 863
BsgI GTGCAG 1 cut(s) 862
BshFI GGCC 2 cut(s) 294, 852
BsiHKCI CYCGRG 1 cut(s) 854
BsiSI CCGG 4 cut(s) 210, 291, 329, 336
BslFI GGGAC 4 cut(s) 630, 822, 910, 971
BslI CCNNNNNNNGG 1 cut(s) 335
BsmFI GGGAC 4 cut(s) 630, 822, 910, 971
BsmI GAATGC 1 cut(s) 321
BsnI GGCC 2 cut(s) 294, 852
BsoBI CYCGRG 1 cut(s) 854
Bsp1407I TGTACA 1 cut(s) 1054
Bsp143I GATC 4 cut(s) 80, 436, 782, 813
Bsp19I CCATGG 1 cut(s) 914
BspACI CCGC 1 cut(s) 443
BspANI GGCC 2 cut(s) 294, 852
BspCNI CTCAG 2 cut(s) 77, 220
BspLI GGNNCC 2 cut(s) 616, 646
BspPI GGATC 3 cut(s) 88, 790, 821
BsrFI RCCGGY 1 cut(s) 290
BsrGI TGTACA 1 cut(s) 1054
BsrI ACTGG 1 cut(s) 1006
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 2 cut(s) 649, 914
BssMI GATC 4 cut(s) 80, 436, 782, 813
BssNI GRCGYC 1 cut(s) 186
BssT1I CCWWGG 2 cut(s) 649, 914
Bst2UI CCWGG 1 cut(s) 619
Bst4CI ACNGT 4 cut(s) 397, 555, 698, 1024
BstACI GRCGYC 1 cut(s) 186
BstAPI GCANNNNNTGC 1 cut(s) 873
BstAUI TGTACA 1 cut(s) 1054
BstBAI YACGTR 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 720
BstDEI CTNAG 3 cut(s) 64, 228, 610
BstDSI CCRYGG 1 cut(s) 914
BstKTI GATC 4 cut(s) 83, 439, 785, 816
BstMBI GATC 4 cut(s) 80, 436, 782, 813
BstMWI GCNNNNNNNGC 2 cut(s) 755, 873
BstNI CCWGG 1 cut(s) 619
BstNSI RCATGY 1 cut(s) 909
BstSCI CCNGG 2 cut(s) 327, 617
BstSFI CTRYAG 1 cut(s) 477
BstV1I GCAGC 1 cut(s) 863
BstX2I RGATCY 1 cut(s) 782
BstYI RGATCY 1 cut(s) 782
BsuRI GGCC 2 cut(s) 294, 852
BtgI CCRYGG 1 cut(s) 914
Cac8I GCNNGC 1 cut(s) 720
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 1 cut(s) 644
CseI GACGC 2 cut(s) 175, 968
Csp6I GTAC 2 cut(s) 448, 1055
CspCI CAANNNNNGTGG 2 cut(s) 243, 278
CviAII CATG 5 cut(s) 258, 873, 906, 915, 927
CviQI GTAC 2 cut(s) 448, 1055
DdeI CTNAG 3 cut(s) 64, 228, 610
DpnI GATC 4 cut(s) 82, 438, 784, 815
DpnII GATC 4 cut(s) 80, 436, 782, 813
Eco130I CCWWGG 2 cut(s) 649, 914
Eco47I GGWCC 1 cut(s) 644
Eco57I CTGAAG 1 cut(s) 723
Eco88I CYCGRG 1 cut(s) 854
EcoRII CCWGG 1 cut(s) 617
EcoT14I CCWWGG 2 cut(s) 649, 914
EcoT22I ATGCAT 1 cut(s) 307
ErhI CCWWGG 2 cut(s) 649, 914
FaeI CATG 5 cut(s) 261, 876, 909, 918, 930
FaqI GGGAC 4 cut(s) 630, 822, 910, 971
FatI CATG 5 cut(s) 257, 872, 905, 914, 926
Fnu4HI GCNGC 1 cut(s) 877
Fsp4HI GCNGC 1 cut(s) 877
FspBI CTAG 1 cut(s) 984
GluI GCNGC 1 cut(s) 877
HaeIII GGCC 2 cut(s) 294, 852
HapII CCGG 4 cut(s) 210, 291, 329, 336
HgaI GACGC 2 cut(s) 175, 968
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 5 cut(s) 261, 876, 909, 918, 930
HinfI GANTC 4 cut(s) 6, 116, 361, 977
HpaII CCGG 4 cut(s) 210, 291, 329, 336
HphI GGTGA 3 cut(s) 199, 409, 578
Hpy188I TCNGA 3 cut(s) 366, 406, 972
Hpy188III TCNNGA 4 cut(s) 43, 414, 568, 1045
HpyAV CCTTC 4 cut(s) 193, 518, 555, 698
HpyCH4III ACNGT 4 cut(s) 397, 555, 698, 1024
HpyCH4IV ACGT 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 2 cut(s) 755, 873
HpyF3I CTNAG 3 cut(s) 64, 228, 610
HpySE526I ACGT 1 cut(s) 105
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 5 cut(s) 261, 876, 909, 918, 930
Kzo9I GATC 4 cut(s) 80, 436, 782, 813
LmnI GCTCC 2 cut(s) 256, 614
Lsp1109I GCAGC 1 cut(s) 863
LweI GCATC 2 cut(s) 314, 814
MaeI CTAG 1 cut(s) 984
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 4 cut(s) 134, 205, 411, 944
MalI GATC 4 cut(s) 82, 438, 784, 815
MboI GATC 4 cut(s) 80, 436, 782, 813
MboII GAAGA 2 cut(s) 225, 943
MfeI CAATTG 2 cut(s) 344, 666
MflI RGATCY 1 cut(s) 782
MnlI CCTC 5 cut(s) 393, 733, 850, 851, 863
Mph1103I ATGCAT 1 cut(s) 307
MseI TTAA 4 cut(s) 71, 498, 732, 764
MslI CAYNNNNRTG 1 cut(s) 904
MspI CCGG 4 cut(s) 210, 291, 329, 336
MspR9I CCNGG 2 cut(s) 329, 619
MunI CAATTG 2 cut(s) 344, 666
Mva1269I GAATGC 1 cut(s) 321
MvaI CCWGG 1 cut(s) 619
MwoI GCNNNNNNNGC 2 cut(s) 755, 873
NciI CCSGG 1 cut(s) 329
NcoI CCATGG 1 cut(s) 914
NdeII GATC 4 cut(s) 80, 436, 782, 813
NlaIII CATG 5 cut(s) 261, 876, 909, 918, 930
NlaIV GGNNCC 2 cut(s) 616, 646
NmuCI GTSAC 3 cut(s) 205, 411, 944
NsiI ATGCAT 1 cut(s) 307
NspI RCATGY 1 cut(s) 909
PaeR7I CTCGAG 1 cut(s) 854
PctI GAATGC 1 cut(s) 321
PfeI GAWTC 4 cut(s) 6, 116, 361, 977
PfoI TCCNGGA 1 cut(s) 327
PkrI GCNGC 1 cut(s) 878
Ppu21I YACGTR 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 617
PspGI CCWGG 1 cut(s) 617
PspN4I GGNNCC 2 cut(s) 616, 646
PspPI GGNCC 1 cut(s) 644
PspXI VCTCGAGB 1 cut(s) 854
PsuI RGATCY 1 cut(s) 782
RsaI GTAC 2 cut(s) 449, 1056
RsaNI GTAC 2 cut(s) 448, 1055
RseI CAYNNNNRTG 1 cut(s) 904
SaqAI TTAA 4 cut(s) 71, 498, 732, 764
SatI GCNGC 1 cut(s) 877
Sau3AI GATC 4 cut(s) 80, 436, 782, 813
Sau96I GGNCC 1 cut(s) 644
ScaI AGTACT 1 cut(s) 449
ScrFI CCNGG 2 cut(s) 329, 619
SetI ASST 6 cut(s) 108, 404, 510, 517, 720, 808
SfaNI GCATC 2 cut(s) 314, 814
SfcI CTRYAG 1 cut(s) 477
Sfr274I CTCGAG 1 cut(s) 854
SinI GGWCC 1 cut(s) 644
SlaI CTCGAG 1 cut(s) 854
SmiMI CAYNNNNRTG 1 cut(s) 904
SmlI CTYRAG 3 cut(s) 43, 262, 854
SmoI CTYRAG 3 cut(s) 43, 262, 854
SsiI CCGC 1 cut(s) 443
SspMI CTAG 1 cut(s) 984
StyD4I CCNGG 2 cut(s) 327, 617
StyI CCWWGG 2 cut(s) 649, 914
TaaI ACNGT 4 cut(s) 397, 555, 698, 1024
TaiI ACGT 1 cut(s) 108
TaqI TCGA 4 cut(s) 278, 725, 802, 855
TatI WGTACW 2 cut(s) 447, 1054
TfiI GAWTC 4 cut(s) 6, 116, 361, 977
Tru1I TTAA 4 cut(s) 71, 498, 732, 764
Tru9I TTAA 4 cut(s) 71, 498, 732, 764
TseFI GTSAC 3 cut(s) 205, 411, 944
TseI GCWGC 1 cut(s) 876
Tsp45I GTSAC 3 cut(s) 205, 411, 944
TspDTI ATGAA 2 cut(s) 12, 956
TspGWI ACGGA 1 cut(s) 876
VpaK11BI GGWCC 1 cut(s) 644
XapI RAATTY 2 cut(s) 55, 760
XceI RCATGY 1 cut(s) 909
XhoI CTCGAG 1 cut(s) 854
XspI CTAG 1 cut(s) 984
ZrmI AGTACT 1 cut(s) 449
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.