Rh2CG559100

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013702
Physical Location & Seq
Reverse (-)
73724010 .. 73726179
2170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG559100.1

Sequence Viewer

Length: 555 bp
ATGGGAATAAAACTATCAATTTCATCACTTATTTTGCTGTTCATGTGTTTTGCGAATTTTGGCCCAGTTTTAGTGGAATGCTCGCCTATTGCCCCAGCATTGTACGTGTTTGGGGATTCTTTGTTTGACAGTGGTAACAATAATTTCTTGCCAACTATAGCAAAGGCAAATTTCCTGCCCTATGGTGTCAATTTTGTGGAGGGTGTCACCGGAAGATTCACCAACGGTAGAACAGTAGCGGATTTTATAGCTGAGTTTCTTGGGCTACCATACGCTCCACCATACTTGAGCATACATGAATCAACAATACTTACCGGCCTGAATTATGCATCTGGGTCTTGTGGCATTCTCCCGGATACTGGAAGCCGATTGGTAAGAATTAGTTACAATGATTATCTTAATAATTACCTTCAGCCTAAACTTTATAACACAAGCAAACGCTACCCTCCTCCACAGTTTGCACAACTCTTGATGGATGCTCTTTCTCACCAGTTTGAGGTCAAGATAATGGGATCGCCTATGATGGAATTACAAGTCCCCTCAAATATGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016298 GO:0016787 GO:0016788
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

184

Amino Acids

20.27

Weight (kDa)

5.27

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 34 - 142 1.5e-07 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 426
AciI CCGC 1 cut(s) 239
AclWI GGATC 1 cut(s) 520
AcsI RAATTY 2 cut(s) 55, 169
AcuI CTGAAG 1 cut(s) 395
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 2 cut(s) 359, 496
AflIII ACRYGT 1 cut(s) 105
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
AlwI GGATC 1 cut(s) 520
AoxI GGCC 2 cut(s) 61, 316
ApoI RAATTY 2 cut(s) 55, 169
AspS9I GGNCC 1 cut(s) 62
AsuC2I CCSGG 1 cut(s) 353
AsuHPI GGTGA 3 cut(s) 199, 211, 479
BccI CCATC 2 cut(s) 466, 517
BciVI GTATCC 1 cut(s) 349
BcnI CCSGG 1 cut(s) 353
BfmI CTRYAG 1 cut(s) 156
BfuI GTATCC 1 cut(s) 349
Bme1390I CCNGG 1 cut(s) 353
BmgT120I GGNCC 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 353
BmrI ACTGGG 1 cut(s) 59
BmsI GCATC 2 cut(s) 338, 466
BmuI ACTGGG 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 307
BpuMI CCSGG 1 cut(s) 353
BsaAI YACGTR 1 cut(s) 106
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 2 cut(s) 359, 496
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 3 cut(s) 65, 364, 490
BseGI GGATG 1 cut(s) 481
BseLI CCNNNNNNNGG 2 cut(s) 359, 496
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 3 cut(s) 65, 364, 490
BseRI GAGGAG 1 cut(s) 438
BseYI CCCAGC 1 cut(s) 94
BshFI GGCC 2 cut(s) 63, 318
BsiSI CCGG 3 cut(s) 210, 315, 353
BslFI GGGAC 1 cut(s) 521
BslI CCNNNNNNNGG 2 cut(s) 359, 496
BsmFI GGGAC 1 cut(s) 521
BsmI GAATGC 2 cut(s) 83, 345
BsnI GGCC 2 cut(s) 63, 318
Bsp143I GATC 1 cut(s) 512
BspACI CCGC 1 cut(s) 239
BspANI GGCC 2 cut(s) 63, 318
BspCNI CTCAG 1 cut(s) 244
BspPI GGATC 1 cut(s) 520
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 3 cut(s) 65, 364, 490
BssAI RCCGGY 1 cut(s) 314
BssMI GATC 1 cut(s) 512
Bst4CI ACNGT 4 cut(s) 131, 227, 235, 456
BstBAI YACGTR 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 481
BstKTI GATC 1 cut(s) 515
BstMBI GATC 1 cut(s) 512
BstSCI CCNGG 1 cut(s) 351
BstSFI CTRYAG 1 cut(s) 156
BsuI GTATCC 1 cut(s) 349
BsuRI GGCC 2 cut(s) 63, 318
BtsCI GGATG 1 cut(s) 481
BtsIMutI CAGTG 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 83
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 103
CspCI CAANNNNNGTGG 2 cut(s) 267, 302
CviAII CATG 2 cut(s) 43, 296
CviJI RGCY 6 cut(s) 63, 251, 265, 318, 366, 415
CviKI_1 RGCY 6 cut(s) 63, 251, 265, 318, 366, 415
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 1 cut(s) 252
DpnI GATC 1 cut(s) 514
DpnII GATC 1 cut(s) 512
Eco57I CTGAAG 1 cut(s) 395
EcoT22I ATGCAT 1 cut(s) 331
FaeI CATG 2 cut(s) 46, 299
FaqI GGGAC 1 cut(s) 521
FatI CATG 2 cut(s) 42, 295
FokI GGATG 1 cut(s) 488
GsaI CCCAGC 1 cut(s) 98
HaeIII GGCC 2 cut(s) 63, 318
HapII CCGG 3 cut(s) 210, 315, 353
Hin1II CATG 2 cut(s) 46, 299
HinfI GANTC 3 cut(s) 116, 216, 299
HpaII CCGG 3 cut(s) 210, 315, 353
HphI GGTGA 3 cut(s) 199, 211, 479
Hpy188III TCNNGA 2 cut(s) 469, 502
HpyAV CCTTC 1 cut(s) 419
HpyCH4III ACNGT 4 cut(s) 131, 227, 235, 456
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 2 cut(s) 329, 461
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 2 cut(s) 46, 299
Kzo9I GATC 1 cut(s) 512
LmnI GCTCC 1 cut(s) 280
LweI GCATC 2 cut(s) 338, 466
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 3 cut(s) 134, 205, 383
MalI GATC 1 cut(s) 514
MboI GATC 1 cut(s) 512
MboII GAAGA 1 cut(s) 225
MluCI AATT 9 cut(s) 18, 55, 142, 169, 190, 322, 378, 403, 527
MnlI CCTC 5 cut(s) 193, 456, 459, 490, 550
Mph1103I ATGCAT 1 cut(s) 331
MseI TTAA 2 cut(s) 399, 553
MspI CCGG 3 cut(s) 210, 315, 353
MspR9I CCNGG 1 cut(s) 353
Mva1269I GAATGC 2 cut(s) 83, 345
NciI CCSGG 1 cut(s) 353
NdeII GATC 1 cut(s) 512
NlaIII CATG 2 cut(s) 46, 299
NmuCI GTSAC 1 cut(s) 205
NsiI ATGCAT 1 cut(s) 331
PctI GAATGC 2 cut(s) 83, 345
PfeI GAWTC 3 cut(s) 116, 216, 299
PfoI TCCNGGA 1 cut(s) 351
Ppu21I YACGTR 1 cut(s) 106
PsiI TTATAA 1 cut(s) 426
PspFI CCCAGC 1 cut(s) 94
PspPI GGNCC 1 cut(s) 62
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SaqAI TTAA 2 cut(s) 399, 553
Sau3AI GATC 1 cut(s) 512
Sau96I GGNCC 1 cut(s) 62
ScrFI CCNGG 1 cut(s) 353
SetI ASST 4 cut(s) 108, 253, 411, 501
SfaNI GCATC 2 cut(s) 338, 466
SfcI CTRYAG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 9 cut(s) 18, 55, 142, 169, 190, 322, 378, 403, 527
SsiI CCGC 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 351
TaaI ACNGT 4 cut(s) 131, 227, 235, 456
TaiI ACGT 1 cut(s) 108
TasI AATT 9 cut(s) 18, 55, 142, 169, 190, 322, 378, 403, 527
TfiI GAWTC 3 cut(s) 116, 216, 299
Tru1I TTAA 2 cut(s) 399, 553
Tru9I TTAA 2 cut(s) 399, 553
TscAI CASTG 1 cut(s) 136
TseFI GTSAC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 3 cut(s) 12, 31, 312
TspRI CASTG 1 cut(s) 136
XapI RAATTY 2 cut(s) 55, 169
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.