Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013702

Physical Location & Seq

Genomic Coordinates Reverse (-)

79661760 .. 79668027

Gene Structure 6268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53266

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1722 bp

ATGAAAATCATGGGAATCAAACAATCAATTTCATCACTTATTTTTCTGTTCTTGAGTTTTGCAAATTTTGGCTCAGTTTTAATTGATGGATCGCCGATTGCACCAGCATTATACGTGTTTGGGGATTCTTTGTTTGATAGTGGTAACAATAATTTCTTGCCAACTTTAGCAAAGGCAGATTTCCTGCCCTATGGCGTCAATTTTGCGAAGGGTGTCACCGGAAGATTTACCAACGGTAAAACAGTAGCGGATTTTATAGCTGAGTTTCTTGGGCTACCATACGCTCCACCATGCTTGAGCATACACAAATCGACAATACTTACCGGCCTGAATTATGCATCTGGGTCTTGTGGCATCCTCCCGGAAACCGGAAGCCAATTGGGGAAGTGCTTGAATCTGAAAGAGCAGATGGATTTGTTTGAAAAAACGGTGAGGTCAGACTTGTCACGACATTTCAAAAATCCCAATGATCTTGCGGAGTACTTGTCCAAGTCCATATTTATAGTTTCTGTAGGCAACAATGATTTTCTTAATAATTACCTTCAACCTAAACTCTATAACACAAGCAAACGCTACCCTTCTCCACAGTTTGCACAACTCTTGATGGATCATCTTTCTCACCATTTTGAGAGATTATATAACTTAGGAGCCAGGAAAATAGTTATGTTTGAAATTGGTCCCCTTGGTTGCACCCCATCCATTGCAAAGACACAAAGCCATAGTGGAAACTGTGCGGAAGGAACAAACAAGCTCGCCTCGATTTTTAACGACAAACTTCGTGCAACTCTCGCAAATTTAACTTTCACTTTTCAAGGATCTTTATTTGTTCTCGGTCGAGCTAACGGGATCGGCTATGATGCAATTACAAGTCCCCTCAAATATGGCCTCGAGGACGGAAGCAATCCATGCTGCACAACTTGGAACAATGGGACATCGGCATGTATTCCATGGGCTAAACCATGCTTTCAACCAAATAGTCACTTCTTCTGGGACGCTTTTCATCTGACTGAATCTGCTAGTTCAGTCATAGCAACTGGCTGTTTCAATGATACAACTGTTTGCACTCCACTAAACATCAAGAAACTTGTACAATGGAATGCTCGCCGATTGCCCCAGCATTGTACGTGTTTTGGGGATTCTTTGTTTGACAGTGGTAACAATAATTTCCTGCCAACTATAGCAAAGGCAAATTTCCTGCCCTATGGTGTCAATTTTGTGGAGGGTGTCACCGGAAGATTCACCAACGGTAGAACAGTAGCGGATTTTATAGCTGAGTTTCTTGGGCTACCATACGCTCCACCATACTTGAGCATACATGAATCAACAATACTTACCGGCCTGAATTATGCATCTGGGTCTTGTGGCATTCTCCCGGATACTGGAAGCCGATTGGTAAGAATTAGCAGCAATGATTATCTTAATAATTACCTTCAGCCTAAACTTTATAACACAAGCAAACGCTACCCTCCTCCACAGTTTGCACAACTCTTGATGGATGCTCTTTCTCACCAGTTTGAGGCATTGAGGACGGAAGCAATCCATGCTGCACAGGTTGGTTACGGGGAACATCGGCCTGTACTCCATTGGCTATACCATGCTCTCAACCAAATAGTCACTTCTTTAATTTGGGACGGTTTTCATCCTGCTGAAACTATTAATTCAATCATAGCAACTAGCTGTTTCAATTATTCAAATGTGATCAAGAAACTTGTACAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016298 GO:0016787 GO:0016788

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

573

Amino Acids

63.17

Weight (kDa)

8.26

Isoelectric Point (pI)

31.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	37 - 344	1.4e-27	GDSL-like Lipase/Acylhydrolase
Lipase_GDSL	PF00657	376 - 482	1.5e-06	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013702)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46180
malus_domestica	MD09G1076300.v1.1 MD17G1066900.v1.1
prunus_persica	Prupe.3G247700_v2.0.a1
pyrus_communis	pycom09g00360 pycom17g06730
rosa_chinensis	RchiOBHm_Chr2g0164621
rosa_laevigata	RLG00000021471
rosa_roxburghii	Rroxscaffold_2G00086430 Rroxscaffold_2G00086440
rosa_rugosa	Rorug02G0509500
rosa_samantha	Rh2AG577200 Rh2BG588400 Rh2CG559100 Rh2CG559200 Rh2DG598900 Rh2DG599000
rosa_wichuraiana	Rw2G047930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1446
AbsI	CCTCGAGG	1 cut(s)	887
AciI	CCGC	4 cut(s)	248, 476, 734, 1259
AclWI	GGATC	4 cut(s)	97, 615, 823, 854
AcsI	RAATTY	3 cut(s)	64, 793, 1189
AcuI	CTGAAG	1 cut(s)	1415
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	5 cut(s)	482, 1089, 1123, 1578, 1713
AfiI	CCNNNNNNNGG	3 cut(s)	368, 1379, 1516
AflIII	ACRYGT	2 cut(s)	114, 1124
AjnI	CCWGG	1 cut(s)	650
AluBI	AGCT	5 cut(s)	260, 751, 839, 1271, 1677
AluI	AGCT	5 cut(s)	260, 751, 839, 1271, 1677
AlwI	GGATC	4 cut(s)	97, 615, 823, 854
Ama87I	CYCGRG	1 cut(s)	887
AoxI	GGCC	4 cut(s)	325, 883, 1336, 1571
ApeKI	GCWGC	3 cut(s)	909, 1404, 1544
ApoI	RAATTY	3 cut(s)	64, 793, 1189
AseI	ATTAAT	1 cut(s)	1656
AspS9I	GGNCC	1 cut(s)	677
AsuC2I	CCSGG	2 cut(s)	362, 1373
AsuHPI	GGTGA	6 cut(s)	208, 442, 611, 1219, 1231, 1499
AvaI	CYCGRG	1 cut(s)	887
AvaII	GGWCC	1 cut(s)	677
BaeI	ACNNNNGTAYC	2 cut(s)	1041, 1074
BbvI	GCAGC	3 cut(s)	896, 1416, 1531
BccI	CCATC	5 cut(s)	80, 403, 598, 703, 1486
BciT130I	CCWGG	1 cut(s)	652
BciVI	GTATCC	1 cut(s)	1369
BclI	TGATCA	1 cut(s)	1698
BcnI	CCSGG	2 cut(s)	362, 1373
BfaI	CTAG	2 cut(s)	1017, 1674
BfmI	CTRYAG	2 cut(s)	510, 1176
BfuI	GTATCC	1 cut(s)	1369
BisI	GCNGC	3 cut(s)	910, 1405, 1545
BlsI	GCNGC	3 cut(s)	911, 1406, 1546
BmcAI	AGTACT	1 cut(s)	482
Bme1390I	CCNGG	3 cut(s)	362, 652, 1373
Bme18I	GGWCC	1 cut(s)	677
BmeT110I	CYCGRG	1 cut(s)	887
BmgT120I	GGNCC	1 cut(s)	677
BmiI	GGNNCC	2 cut(s)	649, 679
BmrFI	CCNGG	3 cut(s)	362, 652, 1373
BmsI	GCATC	5 cut(s)	347, 363, 847, 1358, 1486
BpuEI	CTTGAG	3 cut(s)	73, 316, 1327
BpuMI	CCSGG	2 cut(s)	362, 1373
BsaAI	YACGTR	2 cut(s)	115, 1125
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	2 cut(s)	682, 947
BsaWI	WCCGGW	3 cut(s)	218, 368, 1229
BsaXI	ACNNNNNCTCC	2 cut(s)	470, 500
Bsc4I	CCNNNNNNNGG	3 cut(s)	368, 1379, 1516
Bse118I	RCCGGY	2 cut(s)	323, 1334
Bse1I	ACTGG	3 cut(s)	1039, 1384, 1510
Bse3DI	GCAATG	2 cut(s)	699, 1414
BseBI	CCWGG	1 cut(s)	652
BseDI	CCNNGG	2 cut(s)	682, 947
BseGI	GGATG	4 cut(s)	354, 695, 1501, 1639
BseLI	CCNNNNNNNGG	3 cut(s)	368, 1379, 1516
BseMI	GCAATG	2 cut(s)	699, 1414
BseMII	CTCAG	3 cut(s)	87, 252, 1263
BseNI	ACTGG	3 cut(s)	1039, 1384, 1510
BseRI	GAGGAG	1 cut(s)	1458
BseXI	GCAGC	3 cut(s)	896, 1416, 1531
BseYI	CCCAGC	1 cut(s)	1113
BsgI	GTGCAG	2 cut(s)	895, 1530
Bsh1285I	CGRYCG	1 cut(s)	835
BshFI	GGCC	4 cut(s)	327, 885, 1338, 1573
BsiEI	CGRYCG	1 cut(s)	835
BsiHKCI	CYCGRG	1 cut(s)	887
BsiSI	CCGG	7 cut(s)	219, 324, 362, 369, 1230, 1335, 1373
BslFI	GGGAC	5 cut(s)	663, 855, 943, 1004, 1643
BslI	CCNNNNNNNGG	3 cut(s)	368, 1379, 1516
BsmFI	GGGAC	5 cut(s)	663, 855, 943, 1004, 1643
BsmI	GAATGC	2 cut(s)	1102, 1365
BsnI	GGCC	4 cut(s)	327, 885, 1338, 1573
BsoBI	CYCGRG	1 cut(s)	887
Bsp1407I	TGTACA	2 cut(s)	1087, 1711
Bsp143I	GATC	6 cut(s)	89, 469, 607, 815, 846, 1698
Bsp19I	CCATGG	1 cut(s)	947
BspACI	CCGC	4 cut(s)	248, 476, 734, 1259
BspANI	GGCC	4 cut(s)	327, 885, 1338, 1573
BspCNI	CTCAG	3 cut(s)	86, 253, 1264
BspLI	GGNNCC	2 cut(s)	649, 679
BspPI	GGATC	4 cut(s)	97, 615, 823, 854
BsrDI	GCAATG	2 cut(s)	699, 1414
BsrFI	RCCGGY	2 cut(s)	323, 1334
BsrGI	TGTACA	2 cut(s)	1087, 1711
BsrI	ACTGG	3 cut(s)	1039, 1384, 1510
BssAI	RCCGGY	2 cut(s)	323, 1334
BssECI	CCNNGG	2 cut(s)	682, 947
BssMI	GATC	6 cut(s)	89, 469, 607, 815, 846, 1698
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	2 cut(s)	682, 947
Bst2UI	CCWGG	1 cut(s)	652
BstACI	GRCGYC	1 cut(s)	195
BstAPI	GCANNNNNTGC	2 cut(s)	906, 1541
BstAUI	TGTACA	2 cut(s)	1087, 1711
BstBAI	YACGTR	2 cut(s)	115, 1125
BstC8I	GCNNGC	2 cut(s)	753, 1102
BstDEI	CTNAG	4 cut(s)	73, 261, 643, 1272
BstDSI	CCRYGG	1 cut(s)	947
BstF5I	GGATG	4 cut(s)	354, 695, 1501, 1639
BstKTI	GATC	6 cut(s)	92, 472, 610, 818, 849, 1701
BstMBI	GATC	6 cut(s)	89, 469, 607, 815, 846, 1698
BstMCI	CGRYCG	1 cut(s)	835
BstMWI	GCNNNNNNNGC	3 cut(s)	788, 906, 1541
BstNI	CCWGG	1 cut(s)	652
BstNSI	RCATGY	1 cut(s)	942
BstSCI	CCNGG	3 cut(s)	360, 650, 1371
BstSFI	CTRYAG	2 cut(s)	510, 1176
BstV1I	GCAGC	3 cut(s)	896, 1416, 1531
BstX2I	RGATCY	1 cut(s)	815
BstYI	RGATCY	1 cut(s)	815
BsuI	GTATCC	1 cut(s)	1369
BsuRI	GGCC	4 cut(s)	327, 885, 1338, 1573
BtgI	CCRYGG	1 cut(s)	947
BtsCI	GGATG	4 cut(s)	354, 695, 1501, 1639
BtsIMutI	CAGTG	1 cut(s)	1156
Cac8I	GCNNGC	2 cut(s)	753, 1102
Cfr10I	RCCGGY	2 cut(s)	323, 1334
Cfr13I	GGNCC	1 cut(s)	677
CseI	GACGC	2 cut(s)	184, 1001
Csp6I	GTAC	5 cut(s)	481, 1088, 1122, 1577, 1712
CspCI	CAANNNNNGTGG	4 cut(s)	276, 311, 1287, 1322
CviAII	CATG	9 cut(s)	10, 291, 906, 939, 948, 960, 1316, 1541, 1595
CviQI	GTAC	5 cut(s)	481, 1088, 1122, 1577, 1712
DdeI	CTNAG	4 cut(s)	73, 261, 643, 1272
DpnI	GATC	6 cut(s)	91, 471, 609, 817, 848, 1700
DpnII	GATC	6 cut(s)	89, 469, 607, 815, 846, 1698
Eco130I	CCWWGG	2 cut(s)	682, 947
Eco47I	GGWCC	1 cut(s)	677
Eco57I	CTGAAG	1 cut(s)	1415
Eco88I	CYCGRG	1 cut(s)	887
EcoRII	CCWGG	1 cut(s)	650
EcoT14I	CCWWGG	2 cut(s)	682, 947
EcoT22I	ATGCAT	2 cut(s)	340, 1351
ErhI	CCWWGG	2 cut(s)	682, 947
FaeI	CATG	9 cut(s)	13, 294, 909, 942, 951, 963, 1319, 1544, 1598
FaqI	GGGAC	5 cut(s)	663, 855, 943, 1004, 1643
FatI	CATG	9 cut(s)	9, 290, 905, 938, 947, 959, 1315, 1540, 1594
FbaI	TGATCA	1 cut(s)	1698
Fnu4HI	GCNGC	3 cut(s)	910, 1405, 1545
FokI	GGATG	4 cut(s)	341, 682, 1508, 1626
Fsp4HI	GCNGC	3 cut(s)	910, 1405, 1545
FspBI	CTAG	2 cut(s)	1017, 1674
GluI	GCNGC	3 cut(s)	910, 1405, 1545
GsaI	CCCAGC	1 cut(s)	1117
HaeIII	GGCC	4 cut(s)	327, 885, 1338, 1573
HapII	CCGG	7 cut(s)	219, 324, 362, 369, 1230, 1335, 1373
HgaI	GACGC	2 cut(s)	184, 1001
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	9 cut(s)	13, 294, 909, 942, 951, 963, 1319, 1544, 1598
HinfI	GANTC	7 cut(s)	15, 125, 394, 1010, 1136, 1236, 1319
HpaII	CCGG	7 cut(s)	219, 324, 362, 369, 1230, 1335, 1373
HphI	GGTGA	6 cut(s)	208, 442, 611, 1219, 1231, 1499
Hpy188I	TCNGA	3 cut(s)	399, 439, 1005
Hpy188III	TCNNGA	6 cut(s)	52, 447, 601, 1078, 1489, 1702
HpyAV	CCTTC	5 cut(s)	202, 551, 588, 731, 1439
HpyCH4IV	ACGT	2 cut(s)	114, 1124
HpyF10VI	GCNNNNNNNGC	3 cut(s)	788, 906, 1541
HpyF3I	CTNAG	4 cut(s)	73, 261, 643, 1272
HpySE526I	ACGT	2 cut(s)	114, 1124
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	9 cut(s)	13, 294, 909, 942, 951, 963, 1319, 1544, 1598
Ksp22I	TGATCA	1 cut(s)	1698
Kzo9I	GATC	6 cut(s)	89, 469, 607, 815, 846, 1698
LmnI	GCTCC	3 cut(s)	289, 647, 1300
Lsp1109I	GCAGC	3 cut(s)	896, 1416, 1531
LweI	GCATC	5 cut(s)	347, 363, 847, 1358, 1486
MaeI	CTAG	2 cut(s)	1017, 1674
MaeII	ACGT	2 cut(s)	114, 1124
MaeIII	GTNAC	8 cut(s)	143, 214, 444, 977, 1154, 1225, 1556, 1612
MalI	GATC	6 cut(s)	91, 471, 609, 817, 848, 1700
MboI	GATC	6 cut(s)	89, 469, 607, 815, 846, 1698
MboII	GAAGA	3 cut(s)	234, 976, 1245
MfeI	CAATTG	1 cut(s)	377
MflI	RGATCY	1 cut(s)	815
Mph1103I	ATGCAT	2 cut(s)	340, 1351
MseI	TTAA	7 cut(s)	80, 531, 765, 797, 1419, 1622, 1656
MslI	CAYNNNNRTG	1 cut(s)	937
MspI	CCGG	7 cut(s)	219, 324, 362, 369, 1230, 1335, 1373
MspR9I	CCNGG	3 cut(s)	362, 652, 1373
MunI	CAATTG	1 cut(s)	377
Mva1269I	GAATGC	2 cut(s)	1102, 1365
MvaI	CCWGG	1 cut(s)	652
MwoI	GCNNNNNNNGC	3 cut(s)	788, 906, 1541
NciI	CCSGG	2 cut(s)	362, 1373
NcoI	CCATGG	1 cut(s)	947
NdeII	GATC	6 cut(s)	89, 469, 607, 815, 846, 1698
NlaIII	CATG	9 cut(s)	13, 294, 909, 942, 951, 963, 1319, 1544, 1598
NlaIV	GGNNCC	2 cut(s)	649, 679
NmuCI	GTSAC	5 cut(s)	214, 444, 977, 1225, 1612
NsiI	ATGCAT	2 cut(s)	340, 1351
NspI	RCATGY	1 cut(s)	942
PaeR7I	CTCGAG	1 cut(s)	887
PctI	GAATGC	2 cut(s)	1102, 1365
PfeI	GAWTC	7 cut(s)	15, 125, 394, 1010, 1136, 1236, 1319
PfoI	TCCNGGA	2 cut(s)	360, 1371
PkrI	GCNGC	3 cut(s)	911, 1406, 1546
Ppu21I	YACGTR	2 cut(s)	115, 1125
PshBI	ATTAAT	1 cut(s)	1656
PsiI	TTATAA	1 cut(s)	1446
Psp6I	CCWGG	1 cut(s)	650
PspFI	CCCAGC	1 cut(s)	1113
PspGI	CCWGG	1 cut(s)	650
PspN4I	GGNNCC	2 cut(s)	649, 679
PspPI	GGNCC	1 cut(s)	677
PspXI	VCTCGAGB	1 cut(s)	887
PsuI	RGATCY	1 cut(s)	815
RsaI	GTAC	5 cut(s)	482, 1089, 1123, 1578, 1713
RsaNI	GTAC	5 cut(s)	481, 1088, 1122, 1577, 1712
RseI	CAYNNNNRTG	1 cut(s)	937
SaqAI	TTAA	7 cut(s)	80, 531, 765, 797, 1419, 1622, 1656
SatI	GCNGC	3 cut(s)	910, 1405, 1545
Sau3AI	GATC	6 cut(s)	89, 469, 607, 815, 846, 1698
Sau96I	GGNCC	1 cut(s)	677
ScaI	AGTACT	1 cut(s)	482
ScrFI	CCNGG	3 cut(s)	362, 652, 1373
SfaNI	GCATC	5 cut(s)	347, 363, 847, 1358, 1486
SfcI	CTRYAG	2 cut(s)	510, 1176
Sfr274I	CTCGAG	1 cut(s)	887
SinI	GGWCC	1 cut(s)	677
SlaI	CTCGAG	1 cut(s)	887
SmiMI	CAYNNNNRTG	1 cut(s)	937
SmlI	CTYRAG	4 cut(s)	52, 295, 887, 1306
SmoI	CTYRAG	4 cut(s)	52, 295, 887, 1306
SsiI	CCGC	4 cut(s)	248, 476, 734, 1259
SspMI	CTAG	2 cut(s)	1017, 1674
StyD4I	CCNGG	3 cut(s)	360, 650, 1371
StyI	CCWWGG	2 cut(s)	682, 947
TaiI	ACGT	2 cut(s)	117, 1127
TaqI	TCGA	4 cut(s)	311, 758, 835, 888
TaqII	GACCGA	1 cut(s)	821
TatI	WGTACW	4 cut(s)	480, 1087, 1576, 1711
TfiI	GAWTC	7 cut(s)	15, 125, 394, 1010, 1136, 1236, 1319
Tru1I	TTAA	7 cut(s)	80, 531, 765, 797, 1419, 1622, 1656
Tru9I	TTAA	7 cut(s)	80, 531, 765, 797, 1419, 1622, 1656
TscAI	CASTG	1 cut(s)	1156
TseFI	GTSAC	5 cut(s)	214, 444, 977, 1225, 1612
TseI	GCWGC	3 cut(s)	909, 1404, 1544
Tsp45I	GTSAC	5 cut(s)	214, 444, 977, 1225, 1612
TspDTI	ATGAA	5 cut(s)	17, 21, 989, 1332, 1628
TspGWI	ACGGA	2 cut(s)	909, 1544
TspRI	CASTG	1 cut(s)	1156
VpaK11BI	GGWCC	1 cut(s)	677
VspI	ATTAAT	1 cut(s)	1656
XapI	RAATTY	3 cut(s)	64, 793, 1189
XceI	RCATGY	1 cut(s)	942
XhoI	CTCGAG	1 cut(s)	887
XspI	CTAG	2 cut(s)	1017, 1674
ZrmI	AGTACT	1 cut(s)	482
Zsp2I	ATGCAT	2 cut(s)	340, 1351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.