Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004280

Physical Location & Seq

Genomic Coordinates Reverse (-)

5602616 .. 5608150

Gene Structure 5535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G077700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGAAGACGGGTCAGTGGCGACTAGGCATGGGTGACATGCAGATCGTGCCCGGGGCTCGCCATCGCCCACCTCTGAAGAGGCCATTGTGGATTATTGTCTTGGTTTCTTTGGTCAGCATCTTTGTGATTTGTGCTTTTCTCTACCCACCTCAAAGCAGCGCCGCTTGTTACATATTTTCTTCGAGAGGTTGCAAGGCTATTACCGATTGGCTTCCACCTGCTCCTGCAAGGGAATATACTGATGCTGAGATTGCATCCCGTATTGTGATTAGAGAGATTTTGAGCGCACCTCCTATTCAATCCAAGAATCCAAAAATTGCTTTCATGTTCCTTACACCCAGTGCGTTGCCTTTTGAGAAGCTGTGGGATAAGTTTTTCCATGGTCATGAAGGAAGGTTCTCTGTTTATGTCCATGCTTCTAAAGAAAAGGCAATTCATTTGAGCCGTTACTTTTTTAATCGCGAGATACGCAGTGACCCGGTGATTTGGGGGAAAATTTCCATGGTAGATGCAGAGAGAAGATTATTGGTACATGCTCTTCAAGATCCTGATAACCAGCATTTTGTCTTACTTTCTGAAAGTTGTGTGCCACTGTATACATTTGACTATATCTATGACTATCTGATGAATACAAATATAAGCTATGTTGACTGCTTTGAGGATCCTGGTCCACATGGAAATGGGAGGTATTCTGAGCACATGTTACCTGAAATTGAAAAGAAAGACTTCAGAAAGGGTGCACAGTGGTTCACTATGAAGCGTCAGCATGCTGTGATAGTAATGGCTGATGGTCTTTACTACTCGAAATTCCGGGACTACTGCAGGCCCGGTTTGGACGGGCGCAATTGCATTGCTGATGAACATTACTTGCCTACCTTTTTCAATATAATTGATCCTGGTGGAATTGCAAACTGGTCCGTAACACATGTTGATTGGTCTGAAAGAAAGTGGCATCCAAAGTTATACAAGGGTCATGATATTACTTCTGACCTTCTGAAGAATATTACGTCAGTTGATGTGAGCGTGCATGTAACCAGTGATGAGAAGAGGGTAGTACAGAAATGGCCTTGCTTATGGAATGGTATACAACGGCCGTGTTACTTGTTTGCAAGGAAGTTCCATCCAGAGACTCTCAATAACTTGTTGCACCTTTTTGCCAATTATACAACAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

392

Amino Acids

45.37

Weight (kDa)

8.71

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19160 AT2G19160 AT4G25870 AT4G30060 AT4G30060 AT5G57270 AT5G57270 AT5G57270 AT5G57270 AT5G57270
fragaria_vesca	FvH4_4g07450 FvH4_4g07450
malus_domestica	MD13G1244200.v1.1 MD16G1251400.v1.1
prunus_persica	Prupe.1G077700_v2.0.a1 Prupe.1G077700_v2.0.a1 Prupe.1G077700_v2.0.a1
pyrus_communis	pycom13g21540 pycom16g21130
rosa_chinensis	RchiOBHm_Chr4g0399961
rosa_laevigata	RLG00000009229
rosa_roxburghii	Rroxscaffold_5G00344810
rosa_rugosa	Rorug04G0021300 Rorug04G0021400 Rorug04G0021500 Rorug04G0021600 Rorug04G0021700
rosa_samantha	Rh4AG097300 Rh4BG095000 Rh4CG106600 Rh4DG092200
rosa_wichuraiana	Rw4G008070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	226
Acc36I	ACCTGC	1 cut(s)	226
AccI	GTMKAC	2 cut(s)	596, 1084
AccII	CGCG	1 cut(s)	462
AciI	CCGC	1 cut(s)	162
AclWI	GGATC	4 cut(s)	539, 656, 669, 887
AcoI	YGGCCR	1 cut(s)	1091
AcsI	RAATTY	2 cut(s)	495, 806
AcuI	CTGAAG	3 cut(s)	95, 712, 1016
AdeI	CACNNNGTG	1 cut(s)	341
AfaI	GTAC	2 cut(s)	531, 1056
AflIII	ACRYGT	2 cut(s)	699, 925
AgsI	TTSAA	4 cut(s)	299, 542, 716, 883
AjnI	CCWGG	2 cut(s)	664, 895
AluBI	AGCT	2 cut(s)	361, 642
AluI	AGCT	2 cut(s)	361, 642
Alw21I	GWGCWC	2 cut(s)	699, 742
Alw26I	GTCTC	1 cut(s)	1121
Alw44I	GTGCAC	1 cut(s)	738
AlwI	GGATC	4 cut(s)	539, 656, 669, 887
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	4 cut(s)	80, 824, 1064, 1091
ApaLI	GTGCAC	1 cut(s)	738
ApeKI	GCWGC	1 cut(s)	156
ApoI	RAATTY	2 cut(s)	495, 806
Asp700I	GAANNNNTTC	1 cut(s)	725
AspLEI	GCGC	3 cut(s)	161, 287, 843
AspS9I	GGNCC	3 cut(s)	668, 825, 915
AsuC2I	CCSGG	5 cut(s)	51, 52, 479, 812, 828
AsuHPI	GGTGA	2 cut(s)	44, 493
AvaI	CYCGRG	1 cut(s)	50
AvaII	GGWCC	2 cut(s)	668, 915
BaeGI	GKGCMC	2 cut(s)	51, 742
BamHI	GGATCC	1 cut(s)	661
BanII	GRGCYC	1 cut(s)	58
BarI	GAAGNNNNNNTAC	2 cut(s)	522, 554
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	2 cut(s)	699, 742
BbvI	GCAGC	1 cut(s)	168
BccI	CCATC	3 cut(s)	69, 782, 1128
BceAI	ACGGC	3 cut(s)	429, 1078, 1106
BciT130I	CCWGG	2 cut(s)	666, 897
BcnI	CCSGG	5 cut(s)	51, 52, 479, 812, 828
BcoDI	GTCTC	1 cut(s)	1121
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	820
BfoI	RGCGCY	1 cut(s)	162
BfuAI	ACCTGC	1 cut(s)	226
BisI	GCNGC	2 cut(s)	157, 162
BlsI	GCNGC	2 cut(s)	158, 163
Bme1390I	CCNGG	7 cut(s)	51, 52, 479, 666, 812, 828, 897
Bme18I	GGWCC	2 cut(s)	668, 915
BmeT110I	CYCGRG	1 cut(s)	50
BmgT120I	GGNCC	3 cut(s)	668, 825, 915
BmiI	GGNNCC	1 cut(s)	663
BmrFI	CCNGG	7 cut(s)	51, 52, 479, 666, 812, 828, 897
BmrI	ACTGGG	1 cut(s)	333
BmsI	GCATC	5 cut(s)	126, 232, 263, 499, 961
BmuI	ACTGGG	1 cut(s)	333
BpiI	GAAGAC	1 cut(s)	11
BplI	GAGNNNNNCTC	2 cut(s)	274, 306
BpuMI	CCSGG	5 cut(s)	51, 52, 479, 812, 828
BsaJI	CCNNGG	4 cut(s)	50, 51, 379, 501
Bse1I	ACTGG	3 cut(s)	339, 917, 1035
Bse3DI	GCAATG	1 cut(s)	849
BseBI	CCWGG	2 cut(s)	666, 897
BseDI	CCNNGG	4 cut(s)	50, 51, 379, 501
BseGI	GGATG	3 cut(s)	254, 952, 1120
BseMI	GCAATG	1 cut(s)	849
BseMII	CTCAG	2 cut(s)	237, 684
BseNI	ACTGG	3 cut(s)	339, 917, 1035
BseSI	GKGCMC	2 cut(s)	51, 742
BseX3I	CGGCCG	1 cut(s)	1091
BseXI	GCAGC	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	462
Bsh1285I	CGRYCG	1 cut(s)	1094
BshFI	GGCC	4 cut(s)	82, 826, 1066, 1093
BsiEI	CGRYCG	1 cut(s)	1094
BsiHKAI	GWGCWC	2 cut(s)	699, 742
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	4 cut(s)	51, 479, 811, 828
BslFI	GGGAC	1 cut(s)	827
BsmAI	GTCTC	1 cut(s)	1121
BsmFI	GGGAC	1 cut(s)	827
BsnI	GGCC	4 cut(s)	82, 826, 1066, 1093
BsoBI	CYCGRG	1 cut(s)	50
Bsp1286I	GDGCHC	4 cut(s)	51, 58, 699, 742
Bsp143I	GATC	4 cut(s)	42, 544, 661, 892
Bsp19I	CCATGG	2 cut(s)	379, 501
Bsp68I	TCGCGA	1 cut(s)	462
BspACI	CCGC	1 cut(s)	162
BspANI	GGCC	4 cut(s)	82, 826, 1066, 1093
BspCNI	CTCAG	2 cut(s)	238, 685
BspFNI	CGCG	1 cut(s)	462
BspHI	TCATGA	2 cut(s)	385, 973
BspLI	GGNNCC	1 cut(s)	663
BspMAI	CTGCAG	1 cut(s)	824
BspMI	ACCTGC	1 cut(s)	226
BspPI	GGATC	4 cut(s)	539, 656, 669, 887
BspQI	GCTCTTC	1 cut(s)	543
BsrDI	GCAATG	1 cut(s)	849
BsrI	ACTGG	3 cut(s)	339, 917, 1035
BssECI	CCNNGG	4 cut(s)	50, 51, 379, 501
BssMI	GATC	4 cut(s)	42, 544, 661, 892
BssNAI	GTATAC	2 cut(s)	597, 1085
BssT1I	CCWWGG	2 cut(s)	379, 501
Bst1107I	GTATAC	2 cut(s)	597, 1085
Bst2UI	CCWGG	2 cut(s)	666, 897
Bst4CI	ACNGT	2 cut(s)	594, 744
Bst6I	CTCTTC	3 cut(s)	71, 543, 1040
BstAPI	GCANNNNNTGC	1 cut(s)	46
BstC8I	GCNNGC	4 cut(s)	58, 768, 824, 1025
BstDEI	CTNAG	2 cut(s)	246, 693
BstDSI	CCRYGG	2 cut(s)	379, 501
BstF5I	GGATG	3 cut(s)	254, 952, 1120
BstFNI	CGCG	1 cut(s)	462
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	3 cut(s)	161, 287, 843
BstKTI	GATC	4 cut(s)	45, 547, 664, 895
BstMAI	GTCTC	1 cut(s)	1121
BstMBI	GATC	4 cut(s)	42, 544, 661, 892
BstMCI	CGRYCG	1 cut(s)	1094
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 251, 468
BstNI	CCWGG	2 cut(s)	666, 897
BstNSI	RCATGY	6 cut(s)	40, 536, 703, 770, 929, 1031
BstSCI	CCNGG	7 cut(s)	49, 50, 477, 664, 810, 826, 895
BstSFI	CTRYAG	1 cut(s)	820
BstSLI	GKGCMC	2 cut(s)	51, 742
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	1 cut(s)	168
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	2 cut(s)	544, 661
BstYI	RGATCY	2 cut(s)	544, 661
BstZ17I	GTATAC	2 cut(s)	597, 1085
BstZI	CGGCCG	1 cut(s)	1091
BsuRI	GGCC	4 cut(s)	82, 826, 1066, 1093
BtgI	CCRYGG	2 cut(s)	379, 501
BtgZI	GCGATG	1 cut(s)	47
BtsCI	GGATG	3 cut(s)	254, 952, 1120
BtsI	GCAGTG	1 cut(s)	478
BtsIMutI	CAGTG	6 cut(s)	20, 346, 478, 590, 749, 1042
BtuMI	TCGCGA	1 cut(s)	462
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	4 cut(s)	58, 768, 824, 1025
CciI	TCATGA	2 cut(s)	385, 973
CfoI	GCGC	3 cut(s)	161, 287, 843
Cfr13I	GGNCC	3 cut(s)	668, 825, 915
Cfr9I	CCCGGG	1 cut(s)	50
CseI	GACGC	1 cut(s)	749
Csp6I	GTAC	2 cut(s)	530, 1055
CviQI	GTAC	2 cut(s)	530, 1055
DdeI	CTNAG	2 cut(s)	246, 693
DpnI	GATC	4 cut(s)	44, 546, 663, 894
DpnII	GATC	4 cut(s)	42, 544, 661, 892
DraIII	CACNNNGTG	1 cut(s)	341
EaeI	YGGCCR	1 cut(s)	1091
EagI	CGGCCG	1 cut(s)	1091
Eam1104I	CTCTTC	3 cut(s)	71, 543, 1040
EarI	CTCTTC	3 cut(s)	71, 543, 1040
EclXI	CGGCCG	1 cut(s)	1091
Eco130I	CCWWGG	2 cut(s)	379, 501
Eco24I	GRGCYC	1 cut(s)	58
Eco47I	GGWCC	2 cut(s)	668, 915
Eco52I	CGGCCG	1 cut(s)	1091
Eco57I	CTGAAG	3 cut(s)	95, 712, 1016
Eco88I	CYCGRG	1 cut(s)	50
EcoRII	CCWGG	2 cut(s)	664, 895
EcoT14I	CCWWGG	2 cut(s)	379, 501
EcoT38I	GRGCYC	1 cut(s)	58
ErhI	CCWWGG	2 cut(s)	379, 501
FalI	AAGNNNNNCTT	2 cut(s)	710, 742
FaqI	GGGAC	1 cut(s)	827
FblI	GTMKAC	2 cut(s)	596, 1084
Fnu4HI	GCNGC	2 cut(s)	157, 162
FokI	GGATG	3 cut(s)	241, 939, 1107
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	2 cut(s)	157, 162
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	3 cut(s)	160, 286, 842
GluI	GCNGC	2 cut(s)	157, 162
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	4 cut(s)	82, 826, 1066, 1093
HapII	CCGG	4 cut(s)	51, 479, 811, 828
HgaI	GACGC	1 cut(s)	749
HhaI	GCGC	3 cut(s)	161, 287, 843
Hin6I	GCGC	3 cut(s)	159, 285, 841
HinP1I	GCGC	3 cut(s)	159, 285, 841
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HinfI	GANTC	2 cut(s)	307, 1129
HpaII	CCGG	4 cut(s)	51, 479, 811, 828
HphI	GGTGA	2 cut(s)	44, 493
Hpy166II	GTNNAC	6 cut(s)	597, 649, 671, 740, 750, 1085
Hpy188I	TCNGA	8 cut(s)	75, 577, 624, 694, 731, 940, 988, 996
Hpy188III	TCNNGA	7 cut(s)	183, 386, 461, 542, 548, 974, 1124
Hpy8I	GTNNAC	6 cut(s)	597, 649, 671, 740, 750, 1085
HpyAV	CCTTC	3 cut(s)	383, 387, 1001
HpyCH4III	ACNGT	2 cut(s)	594, 744
HpyCH4IV	ACGT	1 cut(s)	1007
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 251, 468
HpyF3I	CTNAG	2 cut(s)	246, 693
HpySE526I	ACGT	1 cut(s)	1007
HspAI	GCGC	3 cut(s)	159, 285, 841
Kzo9I	GATC	4 cut(s)	42, 544, 661, 892
LguI	GCTCTTC	1 cut(s)	543
LmnI	GCTCC	1 cut(s)	226
Lsp1109I	GCAGC	1 cut(s)	168
LweI	GCATC	5 cut(s)	126, 232, 263, 499, 961
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	1 cut(s)	1007
MaeIII	GTNAC	8 cut(s)	32, 167, 446, 473, 702, 919, 1030, 1097
MalI	GATC	4 cut(s)	44, 546, 663, 894
MboI	GATC	4 cut(s)	42, 544, 661, 892
MboII	GAAGA	7 cut(s)	16, 88, 171, 530, 531, 1009, 1057
MfeI	CAATTG	1 cut(s)	844
MflI	RGATCY	2 cut(s)	544, 661
MhlI	GDGCHC	4 cut(s)	51, 58, 699, 742
MlyI	GAGTC	1 cut(s)	1123
MnlI	CCTC	8 cut(s)	72, 81, 159, 179, 300, 652, 678, 1041
MroXI	GAANNNNTTC	1 cut(s)	725
MseI	TTAA	1 cut(s)	456
MslI	CAYNNNNRTG	3 cut(s)	122, 384, 678
MspI	CCGG	4 cut(s)	51, 479, 811, 828
MspR9I	CCNGG	7 cut(s)	51, 52, 479, 666, 812, 828, 897
MunI	CAATTG	1 cut(s)	844
MvaI	CCWGG	2 cut(s)	666, 897
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	3 cut(s)	46, 251, 468
NciI	CCSGG	5 cut(s)	51, 52, 479, 812, 828
NcoI	CCATGG	2 cut(s)	379, 501
NdeII	GATC	4 cut(s)	42, 544, 661, 892
NlaIV	GGNNCC	1 cut(s)	663
NmuCI	GTSAC	2 cut(s)	32, 473
NruI	TCGCGA	1 cut(s)	462
NspI	RCATGY	6 cut(s)	40, 536, 703, 770, 929, 1031
PaeI	GCATGC	1 cut(s)	770
PagI	TCATGA	2 cut(s)	385, 973
PaqCI	CACCTGC	1 cut(s)	226
PciI	ACATGT	2 cut(s)	699, 925
PciSI	GCTCTTC	1 cut(s)	543
PdmI	GAANNNNTTC	1 cut(s)	725
PfeI	GAWTC	1 cut(s)	307
PfoI	TCCNGGA	1 cut(s)	810
PkrI	GCNGC	2 cut(s)	158, 163
PleI	GAGTC	1 cut(s)	1123
PpsI	GAGTC	1 cut(s)	1123
PscI	ACATGT	2 cut(s)	699, 925
Psp6I	CCWGG	2 cut(s)	664, 895
PspGI	CCWGG	2 cut(s)	664, 895
PspN4I	GGNNCC	1 cut(s)	663
PspPI	GGNCC	3 cut(s)	668, 825, 915
PstI	CTGCAG	1 cut(s)	824
PsuI	RGATCY	2 cut(s)	544, 661
RruI	TCGCGA	1 cut(s)	462
RsaI	GTAC	2 cut(s)	531, 1056
RsaNI	GTAC	2 cut(s)	530, 1055
RseI	CAYNNNNRTG	3 cut(s)	122, 384, 678
SapI	GCTCTTC	1 cut(s)	543
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	2 cut(s)	157, 162
Sau3AI	GATC	4 cut(s)	42, 544, 661, 892
Sau96I	GGNCC	3 cut(s)	668, 825, 915
SchI	GAGTC	1 cut(s)	1123
ScrFI	CCNGG	7 cut(s)	51, 52, 479, 666, 812, 828, 897
SduI	GDGCHC	4 cut(s)	51, 58, 699, 742
SfaNI	GCATC	5 cut(s)	126, 232, 263, 499, 961
SfcI	CTRYAG	1 cut(s)	820
SinI	GGWCC	2 cut(s)	668, 915
SmaI	CCCGGG	1 cut(s)	52
SmiMI	CAYNNNNRTG	3 cut(s)	122, 384, 678
SphI	GCATGC	1 cut(s)	770
SsiI	CCGC	1 cut(s)	162
SspI	AATATT	1 cut(s)	1003
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	7 cut(s)	49, 50, 477, 664, 810, 826, 895
StyI	CCWWGG	2 cut(s)	379, 501
TaaI	ACNGT	2 cut(s)	594, 744
TaiI	ACGT	1 cut(s)	1010
TaqI	TCGA	2 cut(s)	182, 803
TatI	WGTACW	1 cut(s)	1054
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	6 cut(s)	20, 346, 478, 597, 749, 1042
TseFI	GTSAC	2 cut(s)	32, 473
TseI	GCWGC	1 cut(s)	156
Tsp45I	GTSAC	2 cut(s)	32, 473
TspDTI	ATGAA	7 cut(s)	17, 313, 402, 425, 641, 770, 873
TspGWI	ACGGA	1 cut(s)	907
TspMI	CCCGGG	1 cut(s)	50
TspRI	CASTG	6 cut(s)	20, 346, 478, 597, 749, 1042
VneI	GTGCAC	1 cut(s)	738
VpaK11BI	GGWCC	2 cut(s)	668, 915
XapI	RAATTY	2 cut(s)	495, 806
XceI	RCATGY	6 cut(s)	40, 536, 703, 770, 929, 1031
XmaI	CCCGGG	1 cut(s)	50
XmiI	GTMKAC	2 cut(s)	596, 1084
XmnI	GAANNNNTTC	1 cut(s)	725
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.