Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004280

Physical Location & Seq

Genomic Coordinates Reverse (-)

18277948 .. 18281899

Gene Structure 3952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g21540.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGAAGACGAGTCATTGGCGATTAGGCATGGGTGACATGCAGATCTTGCCTGGGGCACGCCATCGCCCACCTTTGAAGAGGCCAGTGTGGATTATTGTCTTGGTTTCTTTGGTCAGCATCTTTGTGATTTGTGCTTTTCTCTATCCACCTCAAAGCAGCGCTGCTTGTTACATATTTTCTTCCAGAGGTTGTAAGGCTATTTCAGATTGGCTTCCACCTGCTCCTGCAAGGGAATTTACTGACGATGAGATTGCATCCCGTGTTGTGATTAGAGAGATTTTAAGCGCACCTCCTATTCAATCCAAGAATCCAAAAATTGCATTCATGTTCCTTACACCAAGTGCATTGCCTTTTGAGAAGCTGTGGGATAAGTTTCTCCATGGTCATGAAGGGAAGTTCTCTATCTATGTGCATGCTTCTAAGGAAAGGGCAATTCATTTGAGCCGTTATTTTTTTAATCGAGAGATTCGCAGTGACCCGGTGATTTGGGGAAAAATTTCTATGGTAGATGCAGAGAGAAGATTATTGGCAAATGCTCTTCAAGATCCTGATAACCAGCATTTTGTCTTACTTTCTGAAAGTTGTGTACCATTGTACACATTTGACCATATCTATGACTATCTGATGAATACAAATATAAGCTATGTTGACTGCTTTGAGGATCCTGGTCCACATGGAAATGGGAGGTATTCTGAACACATGTTACCTGAAATTGAGAAGAAAGACTTTAGAAAGGGTGCACAGTGGTTCTCTATGAAGCGTCGGCATGCTGCGATAGTAATGGCTGATAATCTCTACTACTCGAAATTCCGGGACTACTGTAAGCCAGGTTTTGACGGGCGCAATTGCATTGCTGATGAACATTACTTGCCAACCTTTTTCAATATAATTGATCCTGGTGGCATTGCAAACTGGTCCGTAACACATGTTGATTGGTCTGAAAGAAAGTGGCATCCGAAGTTATACAAGTCTCAGGATATTACACATGAGCTTCTGAAGAATATTACGTCGATTGATGTGAGCGTGCATGTAACCAGTGATGCGAAGAAAGTAGTACAGAAATGGCCTTGCTTATGGAACGGTATAAAACGACCTTGTTACTTATTTGCAAGGAAGTTTCATCCAGAGACTCTCAATGACTTGTTACGCCTTTTTGCCAACTATACAACAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

392

Amino Acids

45.38

Weight (kDa)

8.9

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19160 AT2G19160 AT4G25870 AT4G30060 AT4G30060 AT5G57270 AT5G57270 AT5G57270 AT5G57270 AT5G57270
fragaria_vesca	FvH4_4g07450 FvH4_4g07450
malus_domestica	MD13G1244200.v1.1 MD16G1251400.v1.1
prunus_persica	Prupe.1G077700_v2.0.a1 Prupe.1G077700_v2.0.a1 Prupe.1G077700_v2.0.a1
pyrus_communis	pycom13g21540 pycom16g21130
rosa_chinensis	RchiOBHm_Chr4g0399961
rosa_laevigata	RLG00000009229
rosa_roxburghii	Rroxscaffold_5G00344810
rosa_rugosa	Rorug04G0021300 Rorug04G0021400 Rorug04G0021500 Rorug04G0021600 Rorug04G0021700
rosa_samantha	Rh4AG097300 Rh4BG095000 Rh4CG106600 Rh4DG092200
rosa_wichuraiana	Rw4G008070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	226
Acc36I	ACCTGC	1 cut(s)	226
AclWI	GGATC	4 cut(s)	539, 656, 669, 887
AcsI	RAATTY	3 cut(s)	233, 495, 806
AcuI	CTGAAG	1 cut(s)	1016
AdeI	CACNNNGTG	1 cut(s)	341
AfaI	GTAC	3 cut(s)	588, 596, 1056
AfeI	AGCGCT	1 cut(s)	160
AflIII	ACRYGT	2 cut(s)	699, 925
AgsI	TTSAA	4 cut(s)	76, 299, 542, 883
AjnI	CCWGG	4 cut(s)	49, 664, 826, 895
AluBI	AGCT	3 cut(s)	361, 642, 991
AluI	AGCT	3 cut(s)	361, 642, 991
Alw21I	GWGCWC	1 cut(s)	742
Alw26I	GTCTC	2 cut(s)	975, 1121
Alw44I	GTGCAC	1 cut(s)	738
AlwI	GGATC	4 cut(s)	539, 656, 669, 887
Aor51HI	AGCGCT	1 cut(s)	160
AoxI	GGCC	2 cut(s)	80, 1064
ApaLI	GTGCAC	1 cut(s)	738
ApeKI	GCWGC	3 cut(s)	156, 161, 770
ApoI	RAATTY	3 cut(s)	233, 495, 806
Asp700I	GAANNNNTTC	1 cut(s)	496
AspLEI	GCGC	3 cut(s)	161, 287, 843
AspS9I	GGNCC	2 cut(s)	668, 915
AsuC2I	CCSGG	2 cut(s)	479, 812
AsuHPI	GGTGA	2 cut(s)	44, 493
AvaII	GGWCC	2 cut(s)	668, 915
BaeGI	GKGCMC	2 cut(s)	58, 742
BamHI	GGATCC	1 cut(s)	661
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	742
BbvI	GCAGC	3 cut(s)	148, 168, 757
BccI	CCATC	1 cut(s)	69
BceAI	ACGGC	1 cut(s)	429
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	4 cut(s)	51, 666, 828, 897
BcnI	CCSGG	2 cut(s)	479, 812
BcoDI	GTCTC	2 cut(s)	975, 1121
BfoI	RGCGCY	1 cut(s)	162
BfuAI	ACCTGC	1 cut(s)	226
BglII	AGATCT	1 cut(s)	42
BisI	GCNGC	3 cut(s)	157, 162, 771
BlsI	GCNGC	3 cut(s)	158, 163, 772
Bme1390I	CCNGG	6 cut(s)	51, 479, 666, 812, 828, 897
Bme18I	GGWCC	2 cut(s)	668, 915
BmgT120I	GGNCC	2 cut(s)	668, 915
BmiI	GGNNCC	1 cut(s)	663
BmrFI	CCNGG	6 cut(s)	51, 479, 666, 812, 828, 897
BmsI	GCATC	5 cut(s)	126, 263, 499, 961, 1030
BpiI	GAAGAC	1 cut(s)	11
BpuMI	CCSGG	2 cut(s)	479, 812
BsaJI	CCNNGG	2 cut(s)	50, 379
Bse1I	ACTGG	3 cut(s)	83, 917, 1035
Bse3DI	GCAATG	3 cut(s)	344, 849, 903
BseBI	CCWGG	4 cut(s)	51, 666, 828, 897
BseDI	CCNNGG	2 cut(s)	50, 379
BseGI	GGATG	3 cut(s)	254, 952, 1120
BseMI	GCAATG	3 cut(s)	344, 849, 903
BseMII	CTCAG	1 cut(s)	986
BseNI	ACTGG	3 cut(s)	83, 917, 1035
BseSI	GKGCMC	2 cut(s)	58, 742
BseXI	GCAGC	3 cut(s)	148, 168, 757
BshFI	GGCC	2 cut(s)	82, 1066
BsiHKAI	GWGCWC	1 cut(s)	742
BsiSI	CCGG	2 cut(s)	479, 811
BslFI	GGGAC	1 cut(s)	827
BsmAI	GTCTC	2 cut(s)	975, 1121
BsmFI	GGGAC	1 cut(s)	827
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	2 cut(s)	82, 1066
Bsp1286I	GDGCHC	2 cut(s)	58, 742
Bsp1407I	TGTACA	1 cut(s)	594
Bsp143I	GATC	4 cut(s)	42, 544, 661, 892
Bsp19I	CCATGG	1 cut(s)	379
BspANI	GGCC	2 cut(s)	82, 1066
BspCNI	CTCAG	1 cut(s)	985
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	663
BspMI	ACCTGC	1 cut(s)	226
BspPI	GGATC	4 cut(s)	539, 656, 669, 887
BspQI	GCTCTTC	1 cut(s)	543
BsrDI	GCAATG	3 cut(s)	344, 849, 903
BsrGI	TGTACA	1 cut(s)	594
BsrI	ACTGG	3 cut(s)	83, 917, 1035
BssECI	CCNNGG	2 cut(s)	50, 379
BssMI	GATC	4 cut(s)	42, 544, 661, 892
BssT1I	CCWWGG	1 cut(s)	379
Bst2UI	CCWGG	4 cut(s)	51, 666, 828, 897
Bst4CI	ACNGT	4 cut(s)	744, 821, 1082, 1171
Bst6I	CTCTTC	2 cut(s)	71, 543
BstAPI	GCANNNNNTGC	1 cut(s)	46
BstAUI	TGTACA	1 cut(s)	594
BstC8I	GCNNGC	4 cut(s)	58, 414, 768, 1025
BstDEI	CTNAG	2 cut(s)	420, 972
BstDSI	CCRYGG	1 cut(s)	379
BstF5I	GGATG	3 cut(s)	254, 952, 1120
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	3 cut(s)	161, 287, 843
BstKTI	GATC	4 cut(s)	45, 547, 664, 895
BstMAI	GTCTC	2 cut(s)	975, 1121
BstMBI	GATC	4 cut(s)	42, 544, 661, 892
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNI	CCWGG	4 cut(s)	51, 666, 828, 897
BstNSI	RCATGY	6 cut(s)	40, 416, 703, 770, 929, 1031
BstSCI	CCNGG	6 cut(s)	49, 477, 664, 810, 826, 895
BstSLI	GKGCMC	2 cut(s)	58, 742
BstV1I	GCAGC	3 cut(s)	148, 168, 757
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	3 cut(s)	42, 544, 661
BstYI	RGATCY	3 cut(s)	42, 544, 661
BsuRI	GGCC	2 cut(s)	82, 1066
BtgI	CCRYGG	1 cut(s)	379
BtgZI	GCGATG	1 cut(s)	47
BtsCI	GGATG	3 cut(s)	254, 952, 1120
BtsI	GCAGTG	1 cut(s)	478
BtsIMutI	CAGTG	4 cut(s)	90, 478, 749, 1042
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	4 cut(s)	58, 414, 768, 1025
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	3 cut(s)	161, 287, 843
Cfr13I	GGNCC	2 cut(s)	668, 915
CseI	GACGC	1 cut(s)	749
Csp6I	GTAC	3 cut(s)	587, 595, 1055
CviQI	GTAC	3 cut(s)	587, 595, 1055
DdeI	CTNAG	2 cut(s)	420, 972
DpnI	GATC	4 cut(s)	44, 546, 663, 894
DpnII	GATC	4 cut(s)	42, 544, 661, 892
DraIII	CACNNNGTG	1 cut(s)	341
Eam1104I	CTCTTC	2 cut(s)	71, 543
EarI	CTCTTC	2 cut(s)	71, 543
Eco130I	CCWWGG	1 cut(s)	379
Eco47I	GGWCC	2 cut(s)	668, 915
Eco47III	AGCGCT	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	1016
EcoRII	CCWGG	4 cut(s)	49, 664, 826, 895
EcoT14I	CCWWGG	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	379
FalI	AAGNNNNNCTT	2 cut(s)	710, 742
FaqI	GGGAC	1 cut(s)	827
Fnu4HI	GCNGC	3 cut(s)	157, 162, 771
FokI	GGATG	3 cut(s)	241, 939, 1107
Fsp4HI	GCNGC	3 cut(s)	157, 162, 771
GlaI	GCGC	3 cut(s)	160, 286, 842
GluI	GCNGC	3 cut(s)	157, 162, 771
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	2 cut(s)	82, 1066
HapII	CCGG	2 cut(s)	479, 811
HgaI	GACGC	1 cut(s)	749
HhaI	GCGC	3 cut(s)	161, 287, 843
Hin6I	GCGC	3 cut(s)	159, 285, 841
HinP1I	GCGC	3 cut(s)	159, 285, 841
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HinfI	GANTC	4 cut(s)	10, 307, 466, 1129
HpaII	CCGG	2 cut(s)	479, 811
HphI	GGTGA	2 cut(s)	44, 493
Hpy166II	GTNNAC	5 cut(s)	587, 597, 649, 671, 740
Hpy188I	TCNGA	7 cut(s)	205, 577, 624, 694, 940, 957, 996
Hpy188III	TCNNGA	7 cut(s)	183, 386, 461, 542, 548, 974, 1124
Hpy8I	GTNNAC	5 cut(s)	587, 597, 649, 671, 740
Hpy99I	CGWCG	2 cut(s)	765, 1012
HpyAV	CCTTC	1 cut(s)	383
HpyCH4III	ACNGT	4 cut(s)	744, 821, 1082, 1171
HpyCH4IV	ACGT	1 cut(s)	1007
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	2 cut(s)	420, 972
HpySE526I	ACGT	1 cut(s)	1007
HspAI	GCGC	3 cut(s)	159, 285, 841
Kzo9I	GATC	4 cut(s)	42, 544, 661, 892
LguI	GCTCTTC	1 cut(s)	543
LmnI	GCTCC	1 cut(s)	226
Lsp1109I	GCAGC	3 cut(s)	148, 168, 757
LweI	GCATC	5 cut(s)	126, 263, 499, 961, 1030
MaeII	ACGT	1 cut(s)	1007
MaeIII	GTNAC	8 cut(s)	32, 167, 473, 702, 919, 1030, 1097, 1143
MalI	GATC	4 cut(s)	44, 546, 663, 894
MboI	GATC	4 cut(s)	42, 544, 661, 892
MboII	GAAGA	8 cut(s)	16, 88, 171, 530, 531, 730, 1009, 1057
MfeI	CAATTG	1 cut(s)	844
MflI	RGATCY	3 cut(s)	42, 544, 661
MhlI	GDGCHC	2 cut(s)	58, 742
MluCI	AATT	8 cut(s)	233, 315, 432, 495, 711, 806, 844, 888
MlyI	GAGTC	2 cut(s)	19, 1123
MnlI	CCTC	6 cut(s)	72, 159, 179, 300, 652, 678
MroXI	GAANNNNTTC	1 cut(s)	496
MseI	TTAA	2 cut(s)	281, 456
MslI	CAYNNNNRTG	4 cut(s)	122, 384, 612, 678
MspI	CCGG	2 cut(s)	479, 811
MspR9I	CCNGG	6 cut(s)	51, 479, 666, 812, 828, 897
MunI	CAATTG	1 cut(s)	844
Mva1269I	GAATGC	1 cut(s)	320
MvaI	CCWGG	4 cut(s)	51, 666, 828, 897
MwoI	GCNNNNNNNGC	1 cut(s)	46
NciI	CCSGG	2 cut(s)	479, 812
NcoI	CCATGG	1 cut(s)	379
NdeII	GATC	4 cut(s)	42, 544, 661, 892
NlaIV	GGNNCC	1 cut(s)	663
NmuCI	GTSAC	2 cut(s)	32, 473
NspI	RCATGY	6 cut(s)	40, 416, 703, 770, 929, 1031
PaeI	GCATGC	2 cut(s)	416, 770
PagI	TCATGA	1 cut(s)	385
PaqCI	CACCTGC	1 cut(s)	226
PciI	ACATGT	2 cut(s)	699, 925
PciSI	GCTCTTC	1 cut(s)	543
PctI	GAATGC	1 cut(s)	320
PdmI	GAANNNNTTC	1 cut(s)	496
PfeI	GAWTC	2 cut(s)	307, 466
PfoI	TCCNGGA	1 cut(s)	810
PkrI	GCNGC	3 cut(s)	158, 163, 772
PleI	GAGTC	2 cut(s)	18, 1123
PpsI	GAGTC	2 cut(s)	18, 1123
PscI	ACATGT	2 cut(s)	699, 925
Psp6I	CCWGG	4 cut(s)	49, 664, 826, 895
PspGI	CCWGG	4 cut(s)	49, 664, 826, 895
PspN4I	GGNNCC	1 cut(s)	663
PspPI	GGNCC	2 cut(s)	668, 915
PsrI	GAACNNNNNNTAC	2 cut(s)	687, 719
PsuI	RGATCY	3 cut(s)	42, 544, 661
RsaI	GTAC	3 cut(s)	588, 596, 1056
RsaNI	GTAC	3 cut(s)	587, 595, 1055
RseI	CAYNNNNRTG	4 cut(s)	122, 384, 612, 678
SapI	GCTCTTC	1 cut(s)	543
SaqAI	TTAA	2 cut(s)	281, 456
SatI	GCNGC	3 cut(s)	157, 162, 771
Sau3AI	GATC	4 cut(s)	42, 544, 661, 892
Sau96I	GGNCC	2 cut(s)	668, 915
SchI	GAGTC	2 cut(s)	19, 1123
ScrFI	CCNGG	6 cut(s)	51, 479, 666, 812, 828, 897
SduI	GDGCHC	2 cut(s)	58, 742
SfaNI	GCATC	5 cut(s)	126, 263, 499, 961, 1030
SinI	GGWCC	2 cut(s)	668, 915
SmiMI	CAYNNNNRTG	4 cut(s)	122, 384, 612, 678
SphI	GCATGC	2 cut(s)	416, 770
Sse9I	AATT	8 cut(s)	233, 315, 432, 495, 711, 806, 844, 888
SspI	AATATT	1 cut(s)	1003
StyD4I	CCNGG	6 cut(s)	49, 477, 664, 810, 826, 895
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	4 cut(s)	744, 821, 1082, 1171
TaiI	ACGT	1 cut(s)	1010
TaqI	TCGA	3 cut(s)	460, 803, 1010
TasI	AATT	8 cut(s)	233, 315, 432, 495, 711, 806, 844, 888
TatI	WGTACW	2 cut(s)	594, 1054
TfiI	GAWTC	2 cut(s)	307, 466
Tru1I	TTAA	2 cut(s)	281, 456
Tru9I	TTAA	2 cut(s)	281, 456
TscAI	CASTG	4 cut(s)	90, 478, 749, 1042
TseFI	GTSAC	2 cut(s)	32, 473
TseI	GCWGC	3 cut(s)	156, 161, 770
Tsp45I	GTSAC	2 cut(s)	32, 473
TspDTI	ATGAA	8 cut(s)	17, 313, 402, 425, 641, 770, 873, 1109
TspGWI	ACGGA	1 cut(s)	907
TspRI	CASTG	4 cut(s)	90, 478, 749, 1042
VneI	GTGCAC	1 cut(s)	738
VpaK11BI	GGWCC	2 cut(s)	668, 915
XapI	RAATTY	3 cut(s)	233, 495, 806
XceI	RCATGY	6 cut(s)	40, 416, 703, 770, 929, 1031
XmnI	GAANNNNTTC	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.