Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004280

Physical Location & Seq

Genomic Coordinates Reverse (-)

19343344 .. 19346551

Gene Structure 3208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g21130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCAGAGAGAAGATTATTGGCAAATGCTCTTCAAGATCGATCCTGATAACCAGCATTTTGTCTTACTTTCAGAAAGTTGTGTACCATTGTACACGTTTGACTATATCTATGACTATCTGATGAATACAAATATAAGCTATGTTGACTGCTTTGAGGATCCTGGTCCGCATGGAAATGGGAGGTATTCTGAACACATGTTACCTGAAATTGAGAAGAAAGACTTTAGAAAGGGAGCACAGTGGTTCTCTATGAAGCGTCAGCATGCTGTGATAGCAATGGCTGATAGTCTCTACTACTCGAAATTCCGGGACTACTGTTTTGACGGGCGCAATTGCATTGCTGATGAACATTACTTGCCAACCTTTTTCAATATAATTGATCCTGGTGGCATTGCAAACTGGTCGGTAACACATGTTGATTGGTCTGAAAGAAAGTGGCATCCAAAGTTATACAAATCTCAGGATATTACATATGAGCTTCTGAAGAATATTACGTCAGTTGATGTGAGCGTGCATGTAACCAGTGATGCGAAGAAAGTAGTACAGAGATGGCCTTGCTTATGGAATGGTATACAACGACCAGGCTTGATTGTTCGCCGCCTCCCTACCACGATTCTTGAGTGCAAGGGCTACTGGCAGAGCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

216

Amino Acids

25.5

Weight (kDa)

6.23

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19160 AT2G19160 AT4G25870 AT4G30060 AT4G30060 AT5G57270 AT5G57270 AT5G57270 AT5G57270 AT5G57270
fragaria_vesca	FvH4_4g07450 FvH4_4g07450
malus_domestica	MD13G1244200.v1.1 MD16G1251400.v1.1
prunus_persica	Prupe.1G077700_v2.0.a1 Prupe.1G077700_v2.0.a1 Prupe.1G077700_v2.0.a1
pyrus_communis	pycom13g21540 pycom16g21130
rosa_chinensis	RchiOBHm_Chr4g0399961
rosa_laevigata	RLG00000009229
rosa_roxburghii	Rroxscaffold_5G00344810
rosa_rugosa	Rorug04G0021300 Rorug04G0021400 Rorug04G0021500 Rorug04G0021600 Rorug04G0021700
rosa_samantha	Rh4AG097300 Rh4BG095000 Rh4CG106600 Rh4DG092200
rosa_wichuraiana	Rw4G008070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	571
AciI	CCGC	2 cut(s)	167, 598
AclWI	GGATC	4 cut(s)	35, 152, 165, 374
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	503
AfaI	GTAC	3 cut(s)	84, 92, 543
AflIII	ACRYGT	3 cut(s)	93, 195, 412
AgsI	TTSAA	2 cut(s)	34, 370
AjnI	CCWGG	3 cut(s)	160, 382, 580
AluBI	AGCT	2 cut(s)	138, 478
AluI	AGCT	2 cut(s)	138, 478
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	4 cut(s)	35, 152, 165, 374
AoxI	GGCC	1 cut(s)	551
ApoI	RAATTY	1 cut(s)	302
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	164
AsuC2I	CCSGG	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	164
BamHI	GGATCC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	238
BccI	CCATC	1 cut(s)	543
BcgI	CGANNNNNNTGC	2 cut(s)	384, 418
BciT130I	CCWGG	3 cut(s)	162, 384, 582
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	293
BisI	GCNGC	1 cut(s)	598
BlsI	GCNGC	1 cut(s)	599
Bme1390I	CCNGG	4 cut(s)	162, 308, 384, 582
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	4 cut(s)	162, 308, 384, 582
BmsI	GCATC	2 cut(s)	448, 517
BpuEI	CTTGAG	1 cut(s)	638
BpuMI	CCSGG	1 cut(s)	308
Bsa29I	ATCGAT	1 cut(s)	39
Bse1I	ACTGG	3 cut(s)	404, 522, 638
Bse3DI	GCAATG	3 cut(s)	282, 336, 390
BseBI	CCWGG	3 cut(s)	162, 384, 582
BseCI	ATCGAT	1 cut(s)	39
BseGI	GGATG	1 cut(s)	439
BseMI	GCAATG	3 cut(s)	282, 336, 390
BseMII	CTCAG	1 cut(s)	473
BseNI	ACTGG	3 cut(s)	404, 522, 638
BshFI	GGCC	1 cut(s)	553
BshVI	ATCGAT	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	307
BslFI	GGGAC	1 cut(s)	323
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	1 cut(s)	553
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	4 cut(s)	36, 40, 157, 379
BspACI	CCGC	2 cut(s)	167, 598
BspANI	GGCC	1 cut(s)	553
BspCNI	CTCAG	1 cut(s)	472
BspDI	ATCGAT	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	159
BspPI	GGATC	4 cut(s)	35, 152, 165, 374
BspQI	GCTCTTC	1 cut(s)	35
BsrDI	GCAATG	3 cut(s)	282, 336, 390
BsrGI	TGTACA	1 cut(s)	90
BsrI	ACTGG	3 cut(s)	404, 522, 638
BssMI	GATC	4 cut(s)	36, 40, 157, 379
BssNAI	GTATAC	1 cut(s)	572
Bst1107I	GTATAC	1 cut(s)	572
Bst2UI	CCWGG	3 cut(s)	162, 384, 582
Bst4CI	ACNGT	2 cut(s)	240, 317
Bst6I	CTCTTC	1 cut(s)	35
BstAUI	TGTACA	1 cut(s)	90
BstC8I	GCNNGC	2 cut(s)	264, 512
BstDEI	CTNAG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	439
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	4 cut(s)	39, 43, 160, 382
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	4 cut(s)	36, 40, 157, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	3 cut(s)	162, 384, 582
BstNSI	RCATGY	4 cut(s)	199, 266, 416, 518
BstSCI	CCNGG	4 cut(s)	160, 306, 382, 580
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BstZ17I	GTATAC	1 cut(s)	572
Bsu15I	ATCGAT	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	553
BsuTUI	ATCGAT	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	439
BtsIMutI	CAGTG	2 cut(s)	245, 529
Cac8I	GCNNGC	2 cut(s)	264, 512
CfoI	GCGC	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	164
ClaI	ATCGAT	1 cut(s)	39
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	3 cut(s)	83, 91, 542
CspCI	CAANNNNNGTGG	2 cut(s)	598, 633
CviAII	CATG	5 cut(s)	170, 196, 263, 413, 515
CviJI	RGCY	6 cut(s)	138, 281, 478, 553, 585, 630
CviKI_1	RGCY	6 cut(s)	138, 281, 478, 553, 585, 630
CviQI	GTAC	3 cut(s)	83, 91, 542
DdeI	CTNAG	1 cut(s)	459
DpnI	GATC	4 cut(s)	38, 42, 159, 381
DpnII	GATC	4 cut(s)	36, 40, 157, 379
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	503
EcoRII	CCWGG	3 cut(s)	160, 382, 580
FaeI	CATG	5 cut(s)	173, 199, 266, 416, 518
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	5 cut(s)	169, 195, 262, 412, 514
FauNDI	CATATG	1 cut(s)	472
FblI	GTMKAC	1 cut(s)	571
Fnu4HI	GCNGC	1 cut(s)	598
FokI	GGATG	1 cut(s)	426
Fsp4HI	GCNGC	1 cut(s)	598
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	1 cut(s)	598
HaeIII	GGCC	1 cut(s)	553
HapII	CCGG	1 cut(s)	307
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	1 cut(s)	330
Hin1II	CATG	5 cut(s)	173, 199, 266, 416, 518
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	1 cut(s)	613
HpaII	CCGG	1 cut(s)	307
Hpy166II	GTNNAC	4 cut(s)	83, 93, 145, 572
Hpy188I	TCNGA	5 cut(s)	73, 120, 190, 427, 483
Hpy188III	TCNNGA	4 cut(s)	34, 44, 461, 617
Hpy8I	GTNNAC	4 cut(s)	83, 93, 145, 572
HpyCH4III	ACNGT	2 cut(s)	240, 317
HpyCH4IV	ACGT	2 cut(s)	95, 494
HpyCH4V	TGCA	5 cut(s)	4, 336, 395, 514, 624
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	1 cut(s)	459
HpySE526I	ACGT	2 cut(s)	95, 494
Hsp92II	CATG	5 cut(s)	173, 199, 266, 416, 518
HspAI	GCGC	1 cut(s)	328
Kzo9I	GATC	4 cut(s)	36, 40, 157, 379
LguI	GCTCTTC	1 cut(s)	35
LmnI	GCTCC	1 cut(s)	233
LweI	GCATC	2 cut(s)	448, 517
MaeII	ACGT	2 cut(s)	95, 494
MaeIII	GTNAC	3 cut(s)	198, 406, 517
MalI	GATC	4 cut(s)	38, 42, 159, 381
MboI	GATC	4 cut(s)	36, 40, 157, 379
MboII	GAAGA	5 cut(s)	22, 23, 226, 496, 544
MfeI	CAATTG	1 cut(s)	331
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	4 cut(s)	207, 302, 331, 375
MnlI	CCTC	3 cut(s)	148, 174, 611
MslI	CAYNNNNRTG	1 cut(s)	174
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	4 cut(s)	162, 308, 384, 582
MunI	CAATTG	1 cut(s)	331
MvaI	CCWGG	3 cut(s)	162, 384, 582
MwoI	GCNNNNNNNGC	1 cut(s)	272
NciI	CCSGG	1 cut(s)	308
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	4 cut(s)	36, 40, 157, 379
NlaIII	CATG	5 cut(s)	173, 199, 266, 416, 518
NlaIV	GGNNCC	1 cut(s)	159
NspI	RCATGY	4 cut(s)	199, 266, 416, 518
PaeI	GCATGC	1 cut(s)	266
PciI	ACATGT	2 cut(s)	195, 412
PciSI	GCTCTTC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	613
PfoI	TCCNGGA	1 cut(s)	306
PkrI	GCNGC	1 cut(s)	599
PscI	ACATGT	2 cut(s)	195, 412
Psp6I	CCWGG	3 cut(s)	160, 382, 580
PspGI	CCWGG	3 cut(s)	160, 382, 580
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	164
PsrI	GAACNNNNNNTAC	2 cut(s)	183, 215
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	3 cut(s)	84, 92, 543
RsaNI	GTAC	3 cut(s)	83, 91, 542
RseI	CAYNNNNRTG	1 cut(s)	174
SapI	GCTCTTC	1 cut(s)	35
SatI	GCNGC	1 cut(s)	598
Sau3AI	GATC	4 cut(s)	36, 40, 157, 379
Sau96I	GGNCC	1 cut(s)	164
ScrFI	CCNGG	4 cut(s)	162, 308, 384, 582
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	7 cut(s)	98, 140, 185, 205, 365, 480, 497
SfaNI	GCATC	2 cut(s)	448, 517
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
SphI	GCATGC	1 cut(s)	266
Sse9I	AATT	4 cut(s)	207, 302, 331, 375
SsiI	CCGC	2 cut(s)	167, 598
SspI	AATATT	1 cut(s)	490
StyD4I	CCNGG	4 cut(s)	160, 306, 382, 580
TaaI	ACNGT	2 cut(s)	240, 317
TaiI	ACGT	2 cut(s)	98, 497
TaqI	TCGA	2 cut(s)	39, 299
TasI	AATT	4 cut(s)	207, 302, 331, 375
TatI	WGTACW	2 cut(s)	90, 541
TauI	GCSGC	1 cut(s)	600
TfiI	GAWTC	1 cut(s)	613
TscAI	CASTG	2 cut(s)	245, 529
TspDTI	ATGAA	3 cut(s)	137, 266, 360
TspRI	CASTG	2 cut(s)	245, 529
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	4 cut(s)	199, 266, 416, 518
XmiI	GTMKAC	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.