Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003764

Physical Location & Seq

Genomic Coordinates Forward (+)

31998461 .. 32001225

Gene Structure 2765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G340200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAGGCCTATTCTGATGAAGGGGCACGAGAGGCCCTTGACTTTCCTCAAATACAACAGGGACGGAGACCTCCTTTTCTCCTGCGCCAAAGATCACAACCCAACCGTCTGGTTCGCCGACAATGGCGAGCGCCTCGGCACCTACCGCGGCCACAACGGTGCCGTTTGGTGCTGCGATGTCTCCAGAGACTCCGCACGCCTCATCACCGGCAGCGCCGATCAGACCGCCAAGCTGTGGAACGTTCAGACCGGTCAGCAGCTATTCACCTTTAATTTTGACTCTCCGGCGAGGGCGGTTGACTTATCAGTCGGCGATAGGCTCGCAGTCATAACCACTGACCCCTTCATGGAGCTCTCTTCTGCGATTCACGTCAAGCGCATCGCCAACGACCCCGCAGATCAGGTTGGTGAGTCGGCTCTGATACTCAAGGGACCTCAGGGAAGAATTAACAGGGCTGTTTGGGGGCCTTTGAACAGAACCATCATAAGCGCTGGAGAAGACGCTGTTATTCGTATTTGGGACTCGGAGACTGGCAAACTACTTAAGGAGAACGATAAGGAAGTGGGTCACAAAAAGACGATAACATCACTTGCAAAATCTGTTGATGGTTCGCATTTCCTCACTGGCTCGCTAGATAAATCTGCCAAGCTTTGGGATATTAGAACGTTGACGCTTATCAAGACCTACGTGACGGAGCGCCCAGTCAATGCCGTTGCAATGTCTCCTCTTCTTGATCATGTGGTGCTTGGTGGTGGTCAGGATGCATCAGCTGTCACCACAACTGATCATCGTGCCGGAAAATTTGAAGCCAAATTCTATGACAAGGTTCTTCAAGAAGAGATTGGAGGTGTTAAAGGGCATTTTGGACCCATAAATGCTTTGGCTTTCAATCCTGATGGAAAAAGTTTCTCAAGTGGAGGTGAGGATGGTTACGTACGTCTACATCACTTTGACTCGGATTACTTCAACATCAAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0031461 GO:0032991 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

WD40

Protein Analysis

327

Amino Acids

35.84

Weight (kDa)

6.84

Isoelectric Point (pI)

29.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46280 AT2G46280 AT2G46290
fragaria_vesca	FvH4_4g35950
malus_domestica	MD00G1099900.v1.1 MD13G1013500.v1.1 MD15G1352700.v1.1 MD16G1010400.v1.1
prunus_persica	Prupe.1G340200_v2.0.a1 Prupe.3G206800_v2.0.a1
pyrus_communis	pycom02g16760 pycom13g01140 pycom16g01020
rosa_chinensis	RchiOBHm_Chr4g0445591 RchiOBHm_Chr5g0012021
rosa_laevigata	RLG00000005728 RLG00000031879
rosa_multiflora	Rmu_sc0010148.1_g000009 Rmu_sc0023810.1_g000001 Rmu_ssc0000253.1_g000008
rosa_roxburghii	Rroxscaffold_1G00064570 Rroxscaffold_5G00386060
rosa_rugosa	Rorug04G0362700 Rorug04G0460400
rosa_samantha	Rh4AG424100 Rh4BG436200 Rh4CG450800 Rh4DG432700 Rh5AG092500 Rh5BG088300 Rh5CG102100 Rh5DG088800
rosa_wichuraiana	Rw4G036360 Rw5G008070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	305
AccB1I	GGYRCC	2 cut(s)	137, 158
AccB7I	CCANNNNNTGG	2 cut(s)	234, 651
AccI	GTMKAC	1 cut(s)	940
AccII	CGCG	1 cut(s)	147
AciI	CCGC	6 cut(s)	145, 147, 192, 225, 293, 393
AclI	AACGTT	2 cut(s)	240, 665
AcoI	YGGCCR	1 cut(s)	148
AcsI	RAATTY	3 cut(s)	800, 812, 975
AfaI	GTAC	1 cut(s)	936
AfeI	AGCGCT	1 cut(s)	490
AfiI	CCNNNNNNNGG	3 cut(s)	234, 346, 651
AflII	CTTAAG	1 cut(s)	542
AgeI	ACCGGT	1 cut(s)	248
AgsI	TTSAA	5 cut(s)	472, 806, 833, 889, 967
AjiI	CACGTC	1 cut(s)	370
AleI	CACNNNNGTG	1 cut(s)	156
AluBI	AGCT	5 cut(s)	232, 259, 352, 649, 770
AluI	AGCT	5 cut(s)	232, 259, 352, 649, 770
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	5 cut(s)	60, 180, 184, 521, 726
Aor51HI	AGCGCT	1 cut(s)	490
AoxI	GGCC	4 cut(s)	5, 32, 148, 464
ApeKI	GCWGC	3 cut(s)	171, 210, 256
ApoI	RAATTY	3 cut(s)	800, 812, 975
AsiGI	ACCGGT	1 cut(s)	248
AspLEI	GCGC	6 cut(s)	86, 132, 215, 378, 491, 699
AspS9I	GGNCC	4 cut(s)	33, 431, 464, 866
AsuHPI	GGTGA	5 cut(s)	196, 256, 419, 766, 932
AvaII	GGWCC	2 cut(s)	431, 866
AxyI	CCTNAGG	1 cut(s)	435
BaeGI	GKGCMC	1 cut(s)	27
BanI	GGYRCC	2 cut(s)	137, 158
BanII	GRGCYC	1 cut(s)	354
BauI	CACGAG	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	504
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	3 cut(s)	158, 222, 268
BccI	CCATC	4 cut(s)	488, 599, 890, 920
BceAI	ACGGC	2 cut(s)	146, 695
BclI	TGATCA	2 cut(s)	733, 784
BcoDI	GTCTC	5 cut(s)	60, 180, 184, 521, 726
BfaI	CTAG	1 cut(s)	632
BfoI	RGCGCY	4 cut(s)	133, 216, 492, 700
BfrI	CTTAAG	1 cut(s)	542
BisI	GCNGC	4 cut(s)	148, 172, 211, 257
BlsI	GCNGC	4 cut(s)	149, 173, 212, 258
Bme18I	GGWCC	2 cut(s)	431, 866
BmgBI	CACGTC	1 cut(s)	370
BmgT120I	GGNCC	4 cut(s)	33, 431, 464, 866
BmiI	GGNNCC	5 cut(s)	139, 160, 432, 465, 868
BmrI	ACTGGG	1 cut(s)	695
BmsI	GCATC	3 cut(s)	387, 751, 773
BmuI	ACTGGG	1 cut(s)	695
BpiI	GAAGAC	1 cut(s)	504
BpmI	CTGGAG	2 cut(s)	166, 513
BpuEI	CTTGAG	2 cut(s)	410, 895
BsaAI	YACGTR	2 cut(s)	688, 934
BsaI	GGTCTC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	133, 145
BsaWI	WCCGGW	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	3 cut(s)	234, 346, 651
Bse118I	RCCGGY	2 cut(s)	206, 248
Bse1I	ACTGG	3 cut(s)	535, 628, 701
Bse21I	CCTNAGG	1 cut(s)	435
Bse3DI	GCAATG	1 cut(s)	723
BseDI	CCNNGG	2 cut(s)	133, 145
BseGI	GGATG	2 cut(s)	766, 931
BseLI	CCNNNNNNNGG	3 cut(s)	234, 346, 651
BseMI	GCAATG	1 cut(s)	723
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	3 cut(s)	535, 628, 701
BseRI	GAGGAG	1 cut(s)	714
BseSI	GKGCMC	1 cut(s)	27
BseXI	GCAGC	3 cut(s)	158, 222, 268
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	4 cut(s)	7, 34, 150, 466
BshNI	GGYRCC	2 cut(s)	137, 158
BshTI	ACCGGT	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	4 cut(s)	207, 249, 284, 795
BsiWI	CGTACG	1 cut(s)	934
BslFI	GGGAC	3 cut(s)	74, 444, 533
BslI	CCNNNNNNNGG	3 cut(s)	234, 346, 651
BsmAI	GTCTC	5 cut(s)	60, 180, 184, 521, 726
BsmFI	GGGAC	3 cut(s)	74, 444, 533
BsnI	GGCC	4 cut(s)	7, 34, 150, 466
Bso31I	GGTCTC	1 cut(s)	60
Bsp1286I	GDGCHC	2 cut(s)	27, 354
Bsp143I	GATC	5 cut(s)	91, 217, 397, 733, 784
BspACI	CCGC	6 cut(s)	145, 147, 192, 225, 293, 393
BspANI	GGCC	4 cut(s)	7, 34, 150, 466
BspCNI	CTCAG	1 cut(s)	448
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	5 cut(s)	139, 160, 432, 465, 868
BspT107I	GGYRCC	2 cut(s)	137, 158
BspTI	CTTAAG	1 cut(s)	542
BspTNI	GGTCTC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	723
BsrFI	RCCGGY	2 cut(s)	206, 248
BsrI	ACTGG	3 cut(s)	535, 628, 701
BssAI	RCCGGY	2 cut(s)	206, 248
BssECI	CCNNGG	2 cut(s)	133, 145
BssMI	GATC	5 cut(s)	91, 217, 397, 733, 784
BssSI	CACGAG	1 cut(s)	26
Bst2BI	CACGAG	1 cut(s)	26
Bst4CI	ACNGT	2 cut(s)	106, 158
Bst6I	CTCTTC	3 cut(s)	361, 732, 831
BstAFI	CTTAAG	1 cut(s)	542
BstBAI	YACGTR	2 cut(s)	688, 934
BstC8I	GCNNGC	4 cut(s)	128, 196, 321, 629
BstDEI	CTNAG	1 cut(s)	435
BstDSI	CCRYGG	1 cut(s)	145
BstF5I	GGATG	2 cut(s)	766, 931
BstFNI	CGCG	1 cut(s)	147
BstH2I	RGCGCY	4 cut(s)	133, 216, 492, 700
BstHHI	GCGC	6 cut(s)	86, 132, 215, 378, 491, 699
BstKTI	GATC	5 cut(s)	94, 220, 400, 736, 787
BstMAI	GTCTC	5 cut(s)	60, 180, 184, 521, 726
BstMBI	GATC	5 cut(s)	91, 217, 397, 733, 784
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 144
BstSLI	GKGCMC	1 cut(s)	27
BstSNI	TACGTA	1 cut(s)	934
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	3 cut(s)	158, 222, 268
BstV2I	GAAGAC	1 cut(s)	504
BstXI	CCANNNNNNTGG	1 cut(s)	108
Bsu36I	CCTNAGG	1 cut(s)	435
BsuRI	GGCC	4 cut(s)	7, 34, 150, 466
BtgI	CCRYGG	1 cut(s)	145
BtgZI	GCGATG	2 cut(s)	189, 364
BtrI	CACGTC	1 cut(s)	370
BtsCI	GGATG	2 cut(s)	766, 931
BtsIMutI	CAGTG	2 cut(s)	333, 621
Cac8I	GCNNGC	4 cut(s)	128, 196, 321, 629
CfoI	GCGC	6 cut(s)	86, 132, 215, 378, 491, 699
Cfr10I	RCCGGY	2 cut(s)	206, 248
Cfr13I	GGNCC	4 cut(s)	33, 431, 464, 866
Cfr42I	CCGCGG	1 cut(s)	148
CseI	GACGC	2 cut(s)	509, 679
Csp6I	GTAC	1 cut(s)	935
CspAI	ACCGGT	1 cut(s)	248
CviAII	CATG	2 cut(s)	346, 737
CviQI	GTAC	1 cut(s)	935
DdeI	CTNAG	1 cut(s)	435
DpnI	GATC	5 cut(s)	93, 219, 399, 735, 786
DpnII	GATC	5 cut(s)	91, 217, 397, 733, 784
DrdI	GACNNNNNNGTC	1 cut(s)	305
DseDI	GACNNNNNNGTC	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	3 cut(s)	361, 732, 831
EarI	CTCTTC	3 cut(s)	361, 732, 831
Ecl136II	GAGCTC	1 cut(s)	352
Eco105I	TACGTA	1 cut(s)	934
Eco147I	AGGCCT	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	354
Eco31I	GGTCTC	1 cut(s)	60
Eco47I	GGWCC	2 cut(s)	431, 866
Eco47III	AGCGCT	1 cut(s)	490
Eco53kI	GAGCTC	1 cut(s)	352
Eco81I	CCTNAGG	1 cut(s)	435
EcoICRI	GAGCTC	1 cut(s)	352
EcoO109I	RGGNCCY	3 cut(s)	33, 431, 464
EcoT22I	ATGCAT	1 cut(s)	766
EcoT38I	GRGCYC	1 cut(s)	354
FaeI	CATG	2 cut(s)	349, 740
FaiI	YATR	6 cut(s)	329, 347, 485, 738, 819, 872
FaqI	GGGAC	3 cut(s)	74, 444, 533
FatI	CATG	2 cut(s)	345, 736
FauI	CCCGC	1 cut(s)	400
FbaI	TGATCA	2 cut(s)	733, 784
FblI	GTMKAC	1 cut(s)	940
Fnu4HI	GCNGC	4 cut(s)	148, 172, 211, 257
FokI	GGATG	2 cut(s)	773, 938
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	4 cut(s)	148, 172, 211, 257
FspBI	CTAG	1 cut(s)	632
GlaI	GCGC	6 cut(s)	85, 131, 214, 377, 490, 698
GluI	GCNGC	4 cut(s)	148, 172, 211, 257
GsuI	CTGGAG	2 cut(s)	166, 513
HaeII	RGCGCY	4 cut(s)	133, 216, 492, 700
HaeIII	GGCC	4 cut(s)	7, 34, 150, 466
HapII	CCGG	4 cut(s)	207, 249, 284, 795
HgaI	GACGC	2 cut(s)	509, 679
HhaI	GCGC	6 cut(s)	86, 132, 215, 378, 491, 699
Hin1II	CATG	2 cut(s)	349, 740
Hin6I	GCGC	6 cut(s)	84, 130, 213, 376, 489, 697
HinP1I	GCGC	6 cut(s)	84, 130, 213, 376, 489, 697
HincII	GTYRAC	2 cut(s)	298, 669
HindII	GTYRAC	2 cut(s)	298, 669
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	6 cut(s)	188, 278, 364, 410, 521, 953
HpaII	CCGG	4 cut(s)	207, 249, 284, 795
HphI	GGTGA	5 cut(s)	196, 256, 419, 766, 932
Hpy166II	GTNNAC	3 cut(s)	298, 669, 941
Hpy188I	TCNGA	6 cut(s)	15, 222, 246, 420, 526, 958
Hpy188III	TCNNGA	6 cut(s)	183, 679, 731, 758, 833, 893
Hpy8I	GTNNAC	3 cut(s)	298, 669, 941
HpyAV	CCTTC	2 cut(s)	13, 352
HpyCH4III	ACNGT	2 cut(s)	106, 158
HpyCH4IV	ACGT	6 cut(s)	240, 369, 665, 687, 933, 937
HpyCH4V	TGCA	3 cut(s)	593, 716, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 144
HpyF3I	CTNAG	1 cut(s)	435
HpySE526I	ACGT	6 cut(s)	240, 369, 665, 687, 933, 937
Hsp92II	CATG	2 cut(s)	349, 740
HspAI	GCGC	6 cut(s)	84, 130, 213, 376, 489, 697
Ksp22I	TGATCA	2 cut(s)	733, 784
KspI	CCGCGG	1 cut(s)	148
Kzo9I	GATC	5 cut(s)	91, 217, 397, 733, 784
LmnI	GCTCC	2 cut(s)	349, 694
Lsp1109I	GCAGC	3 cut(s)	158, 222, 268
LweI	GCATC	3 cut(s)	387, 751, 773
MaeI	CTAG	1 cut(s)	632
MaeII	ACGT	6 cut(s)	240, 369, 665, 687, 933, 937
MaeIII	GTNAC	4 cut(s)	566, 688, 772, 929
MalI	GATC	5 cut(s)	93, 219, 399, 735, 786
MboI	GATC	5 cut(s)	91, 217, 397, 733, 784
MboII	GAAGA	6 cut(s)	348, 453, 509, 719, 821, 848
MhlI	GDGCHC	2 cut(s)	27, 354
MluCI	AATT	5 cut(s)	271, 444, 800, 812, 975
MlyI	GAGTC	5 cut(s)	182, 272, 419, 515, 947
Mph1103I	ATGCAT	1 cut(s)	766
MseI	TTAA	4 cut(s)	270, 447, 543, 852
MslI	CAYNNNNRTG	1 cut(s)	156
MspA1I	CMGCKG	2 cut(s)	147, 770
MspCI	CTTAAG	1 cut(s)	542
MspI	CCGG	4 cut(s)	207, 249, 284, 795
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	31, 144
NdeII	GATC	5 cut(s)	91, 217, 397, 733, 784
NlaIII	CATG	2 cut(s)	349, 740
NlaIV	GGNNCC	5 cut(s)	139, 160, 432, 465, 868
NmeAIII	GCCGAG	1 cut(s)	114
NmuCI	GTSAC	3 cut(s)	566, 688, 772
NsiI	ATGCAT	1 cut(s)	766
OliI	CACNNNNGTG	1 cut(s)	156
PceI	AGGCCT	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	364
Pfl23II	CGTACG	1 cut(s)	934
PflMI	CCANNNNNTGG	2 cut(s)	234, 651
PinAI	ACCGGT	1 cut(s)	248
PkrI	GCNGC	4 cut(s)	149, 173, 212, 258
PleI	GAGTC	5 cut(s)	182, 272, 418, 515, 947
PpsI	GAGTC	5 cut(s)	182, 272, 418, 515, 947
Ppu21I	YACGTR	2 cut(s)	688, 934
PpuMI	RGGWCCY	1 cut(s)	431
Psp124BI	GAGCTC	1 cut(s)	354
Psp1406I	AACGTT	2 cut(s)	240, 665
Psp5II	RGGWCCY	1 cut(s)	431
PspLI	CGTACG	1 cut(s)	934
PspN4I	GGNNCC	5 cut(s)	139, 160, 432, 465, 868
PspPI	GGNCC	4 cut(s)	33, 431, 464, 866
PspPPI	RGGWCCY	1 cut(s)	431
PvuII	CAGCTG	1 cut(s)	770
RsaI	GTAC	1 cut(s)	936
RsaNI	GTAC	1 cut(s)	935
RseI	CAYNNNNRTG	1 cut(s)	156
SacI	GAGCTC	1 cut(s)	354
SacII	CCGCGG	1 cut(s)	148
SaqAI	TTAA	4 cut(s)	270, 447, 543, 852
SatI	GCNGC	4 cut(s)	148, 172, 211, 257
Sau3AI	GATC	5 cut(s)	91, 217, 397, 733, 784
Sau96I	GGNCC	4 cut(s)	33, 431, 464, 866
SchI	GAGTC	5 cut(s)	182, 272, 419, 515, 947
SduI	GDGCHC	2 cut(s)	27, 354
SfaNI	GCATC	3 cut(s)	387, 751, 773
Sfr303I	CCGCGG	1 cut(s)	148
SgrBI	CCGCGG	1 cut(s)	148
SinI	GGWCC	2 cut(s)	431, 866
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	3 cut(s)	425, 542, 910
SmoI	CTYRAG	3 cut(s)	425, 542, 910
SnaBI	TACGTA	1 cut(s)	934
Sse9I	AATT	5 cut(s)	271, 444, 800, 812, 975
SseBI	AGGCCT	1 cut(s)	7
SsiI	CCGC	6 cut(s)	145, 147, 192, 225, 293, 393
SspMI	CTAG	1 cut(s)	632
SstI	GAGCTC	1 cut(s)	354
StuI	AGGCCT	1 cut(s)	7
TaaI	ACNGT	2 cut(s)	106, 158
TaiI	ACGT	6 cut(s)	243, 372, 668, 690, 936, 940
TasI	AATT	5 cut(s)	271, 444, 800, 812, 975
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	4 cut(s)	270, 447, 543, 852
Tru9I	TTAA	4 cut(s)	270, 447, 543, 852
TscAI	CASTG	2 cut(s)	340, 628
TseFI	GTSAC	3 cut(s)	566, 688, 772
TseI	GCWGC	3 cut(s)	171, 210, 256
Tsp45I	GTSAC	3 cut(s)	566, 688, 772
TspDTI	ATGAA	2 cut(s)	32, 334
TspGWI	ACGGA	2 cut(s)	78, 707
TspRI	CASTG	2 cut(s)	340, 628
Van91I	CCANNNNNTGG	2 cut(s)	234, 651
Vha464I	CTTAAG	1 cut(s)	542
VpaK11BI	GGWCC	2 cut(s)	431, 866
XapI	RAATTY	3 cut(s)	800, 812, 975
XcmI	CCANNNNNNNNNTGG	1 cut(s)	877
XmiI	GTMKAC	1 cut(s)	940
XspI	CTAG	1 cut(s)	632
Zsp2I	ATGCAT	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.