Rorug04G0460400

component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001055
Physical Location & Seq
Forward (+)
61263764 .. 61266288
2525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0460400.1

Sequence Viewer

Length: 525 bp
ATGAGTATAGGAGGAGGAACAGTAGGGTTATTAAGCTCAGCCACAGCCACAGCCACAGCCATAGGCAGAGCTGCCTCGAGTACACCAGCAGATGCGGGGCAAAGGAATTCACGATTCCCTTGTTGCTGGGCAGCGGCAGGGGCAAAGCTCACTCGCGCTCACTACCCAACAACTCTAACTCCAACTCCAACTCCAAGGAGGAAAAGTAGAATGATTGTTTGCGAAGTCGCTATCGGATCCGATTTTTCTCCATCAACATCATCAGAGGTAGAAGCGGCCGCCTCCTCAAAGATCGGCGCTAGGGTCAAGGTAACCGTGCCTCTCAAGGTGTACCACGTGCCCAGAGTTCCCGAGGTCGACATCACTGGCATGGAAGGTGAACTCAAGCAGTACGTTGGCCTCTGGAAGGGCAAACGGATTTCTGCCAATCTCCCTTATAAAGTACAGTTCTTTGTCGACGTCGAAGGCCGTGGCCCTGTTAAATTCTTTGCGCATCTCAAGGAGGACGAGTTCGAATACCTTTGA

Protein Analysis

174

Amino Acids

18.63

Weight (kDa)

9.48

Isoelectric Point (pI)

31.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FeThRed_A PF02941 98 - 170 1e-27 Ferredoxin thioredoxin reductase variable alpha chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 438
AatII GACGTC 1 cut(s) 462
Acc16I TGCGCA 1 cut(s) 492
AccI GTMKAC 2 cut(s) 357, 456
AccII CGCG 1 cut(s) 156
AciI CCGC 4 cut(s) 95, 134, 275, 279
AclWI GGATC 2 cut(s) 231, 244
AcoI YGGCCR 1 cut(s) 276
AcsI RAATTY 2 cut(s) 106, 482
AcvI CACGTG 1 cut(s) 337
AcyI GRCGYC 1 cut(s) 459
AfaI GTAC 4 cut(s) 82, 332, 392, 444
AfiI CCNNNNNNNGG 1 cut(s) 406
AloI GAACNNNNNNTCC 1 cut(s) 494
AluBI AGCT 3 cut(s) 36, 71, 148
AluI AGCT 3 cut(s) 36, 71, 148
AlwI GGATC 2 cut(s) 231, 244
Ama87I CYCGRG 2 cut(s) 76, 350
AoxI GGCC 4 cut(s) 276, 397, 466, 472
ApeKI GCWGC 2 cut(s) 71, 131
ApoI RAATTY 2 cut(s) 106, 482
AspLEI GCGC 3 cut(s) 158, 299, 493
AspS9I GGNCC 1 cut(s) 473
AsuHPI GGTGA 1 cut(s) 389
AsuII TTCGAA 1 cut(s) 513
AvaI CYCGRG 2 cut(s) 76, 350
BaeGI GKGCMC 1 cut(s) 342
BamHI GGATCC 1 cut(s) 236
BbrPI CACGTG 1 cut(s) 337
BbvI GCAGC 2 cut(s) 58, 143
BccI CCATC 1 cut(s) 259
BceAI ACGGC 1 cut(s) 453
BfaI CTAG 1 cut(s) 300
BfoI RGCGCY 1 cut(s) 300
BisI GCNGC 5 cut(s) 72, 132, 135, 276, 279
BlpI GCTNAGC 1 cut(s) 37
BlsI GCNGC 5 cut(s) 73, 133, 136, 277, 280
BmeT110I CYCGRG 2 cut(s) 76, 350
BmgT120I GGNCC 1 cut(s) 473
BmiI GGNNCC 1 cut(s) 238
BmsI GCATC 2 cut(s) 82, 502
Bpu1102I GCTNAGC 1 cut(s) 37
Bpu14I TTCGAA 1 cut(s) 513
BpuEI CTTGAG 3 cut(s) 308, 368, 482
BsaAI YACGTR 1 cut(s) 337
BsaHI GRCGYC 1 cut(s) 459
BsaJI CCNNGG 3 cut(s) 194, 351, 469
Bsc4I CCNNNNNNNGG 1 cut(s) 406
Bse1I ACTGG 1 cut(s) 370
BseDI CCNNGG 3 cut(s) 194, 351, 469
BseLI CCNNNNNNNGG 1 cut(s) 406
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 370
BseRI GAGGAG 2 cut(s) 27, 274
BseSI GKGCMC 1 cut(s) 342
BseX3I CGGCCG 1 cut(s) 276
BseXI GCAGC 2 cut(s) 58, 143
BseYI CCCAGC 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 156
Bsh1285I CGRYCG 1 cut(s) 279
BshFI GGCC 4 cut(s) 278, 399, 468, 474
BsiEI CGRYCG 1 cut(s) 279
BsiHKCI CYCGRG 2 cut(s) 76, 350
BslI CCNNNNNNNGG 1 cut(s) 406
BsnI GGCC 4 cut(s) 278, 399, 468, 474
BsoBI CYCGRG 2 cut(s) 76, 350
Bsp119I TTCGAA 1 cut(s) 513
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 2 cut(s) 236, 291
Bsp1720I GCTNAGC 1 cut(s) 37
BspACI CCGC 4 cut(s) 95, 134, 275, 279
BspANI GGCC 4 cut(s) 278, 399, 468, 474
BspCNI CTCAG 1 cut(s) 50
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 238
BspPI GGATC 2 cut(s) 231, 244
BspT104I TTCGAA 1 cut(s) 513
BsrI ACTGG 1 cut(s) 370
BssECI CCNNGG 3 cut(s) 194, 351, 469
BssMI GATC 2 cut(s) 236, 291
BssNI GRCGYC 1 cut(s) 459
BssT1I CCWWGG 1 cut(s) 194
Bst4CI ACNGT 3 cut(s) 22, 316, 447
BstACI GRCGYC 1 cut(s) 459
BstBAI YACGTR 1 cut(s) 337
BstBI TTCGAA 1 cut(s) 513
BstDEI CTNAG 1 cut(s) 37
BstDSI CCRYGG 1 cut(s) 469
BstEII GGTNACC 1 cut(s) 310
BstENI CCTNNNNNAGG 1 cut(s) 404
BstFNI CGCG 1 cut(s) 156
BstH2I RGCGCY 1 cut(s) 300
BstHHI GCGC 3 cut(s) 158, 299, 493
BstKTI GATC 2 cut(s) 239, 294
BstMBI GATC 2 cut(s) 236, 291
BstMCI CGRYCG 1 cut(s) 279
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstPI GGTNACC 1 cut(s) 310
BstSLI GKGCMC 1 cut(s) 342
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 58, 143
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
BstZI CGGCCG 1 cut(s) 276
BsuRI GGCC 4 cut(s) 278, 399, 468, 474
BtgI CCRYGG 1 cut(s) 469
BtsIMutI CAGTG 1 cut(s) 363
CciNI GCGGCCGC 1 cut(s) 276
CfoI GCGC 3 cut(s) 158, 299, 493
Cfr13I GGNCC 1 cut(s) 473
Csp6I GTAC 4 cut(s) 81, 331, 391, 443
CviAII CATG 1 cut(s) 370
CviQI GTAC 4 cut(s) 81, 331, 391, 443
DdeI CTNAG 1 cut(s) 37
DpnI GATC 2 cut(s) 238, 293
DpnII GATC 2 cut(s) 236, 291
EaeI YGGCCR 1 cut(s) 276
EagI CGGCCG 1 cut(s) 276
EclXI CGGCCG 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 194
Eco52I CGGCCG 1 cut(s) 276
Eco72I CACGTG 1 cut(s) 337
Eco88I CYCGRG 2 cut(s) 76, 350
Eco91I GGTNACC 1 cut(s) 310
EcoNI CCTNNNNNAGG 1 cut(s) 404
EcoO65I GGTNACC 1 cut(s) 310
EcoRI GAATTC 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 1 cut(s) 373
FaiI YATR 4 cut(s) 8, 62, 371, 438
FatI CATG 1 cut(s) 369
FauI CCCGC 1 cut(s) 88
FblI GTMKAC 2 cut(s) 357, 456
Fnu4HI GCNGC 5 cut(s) 72, 132, 135, 276, 279
Fsp4HI GCNGC 5 cut(s) 72, 132, 135, 276, 279
FspBI CTAG 1 cut(s) 300
FspI TGCGCA 1 cut(s) 492
GlaI GCGC 3 cut(s) 157, 298, 492
GluI GCNGC 5 cut(s) 72, 132, 135, 276, 279
GsaI CCCAGC 1 cut(s) 130
HaeII RGCGCY 1 cut(s) 300
HaeIII GGCC 4 cut(s) 278, 399, 468, 474
HhaI GCGC 3 cut(s) 158, 299, 493
Hin1I GRCGYC 1 cut(s) 459
Hin1II CATG 1 cut(s) 373
Hin6I GCGC 3 cut(s) 156, 297, 491
HinP1I GCGC 3 cut(s) 156, 297, 491
HincII GTYRAC 2 cut(s) 358, 457
HindII GTYRAC 2 cut(s) 358, 457
HinfI GANTC 1 cut(s) 114
HphI GGTGA 1 cut(s) 389
Hpy166II GTNNAC 5 cut(s) 83, 331, 358, 380, 457
Hpy188I TCNGA 3 cut(s) 236, 241, 265
Hpy188III TCNNGA 3 cut(s) 111, 350, 403
Hpy8I GTNNAC 5 cut(s) 83, 331, 358, 380, 457
Hpy99I CGWCG 2 cut(s) 461, 464
HpyAV CCTTC 3 cut(s) 368, 400, 458
HpyCH4III ACNGT 3 cut(s) 22, 316, 447
HpyCH4IV ACGT 3 cut(s) 336, 393, 459
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 1 cut(s) 37
HpySE526I ACGT 3 cut(s) 336, 393, 459
Hsp92I GRCGYC 1 cut(s) 459
Hsp92II CATG 1 cut(s) 373
HspAI GCGC 3 cut(s) 156, 297, 491
Kzo9I GATC 2 cut(s) 236, 291
LpnPI CCDG 7 cut(s) 99, 112, 123, 351, 355, 388, 489
Lsp1109I GCAGC 2 cut(s) 58, 143
LweI GCATC 2 cut(s) 82, 502
MaeI CTAG 1 cut(s) 300
MaeII ACGT 3 cut(s) 336, 393, 459
MaeIII GTNAC 1 cut(s) 310
MalI GATC 2 cut(s) 238, 293
MboI GATC 2 cut(s) 236, 291
MflI RGATCY 1 cut(s) 236
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 2 cut(s) 106, 482
MmeI TCCRAC 2 cut(s) 206, 212
MseI TTAA 2 cut(s) 32, 480
MslI CAYNNNNRTG 1 cut(s) 368
MspA1I CMGCKG 1 cut(s) 134
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 2 cut(s) 236, 291
NlaIII CATG 1 cut(s) 373
NlaIV GGNNCC 1 cut(s) 238
NotI GCGGCCGC 1 cut(s) 276
NsbI TGCGCA 1 cut(s) 492
NspV TTCGAA 1 cut(s) 513
PaeR7I CTCGAG 1 cut(s) 76
PfeI GAWTC 1 cut(s) 114
PkrI GCNGC 5 cut(s) 73, 133, 136, 277, 280
PmaCI CACGTG 1 cut(s) 337
PmlI CACGTG 1 cut(s) 337
Ppu21I YACGTR 1 cut(s) 337
PsiI TTATAA 1 cut(s) 438
PspCI CACGTG 1 cut(s) 337
PspEI GGTNACC 1 cut(s) 310
PspFI CCCAGC 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 473
PspXI VCTCGAGB 1 cut(s) 76
PsuI RGATCY 1 cut(s) 236
RsaI GTAC 4 cut(s) 82, 332, 392, 444
RsaNI GTAC 4 cut(s) 81, 331, 391, 443
RseI CAYNNNNRTG 1 cut(s) 368
SalI GTCGAC 2 cut(s) 356, 455
SaqAI TTAA 2 cut(s) 32, 480
SatI GCNGC 5 cut(s) 72, 132, 135, 276, 279
Sau3AI GATC 2 cut(s) 236, 291
Sau96I GGNCC 1 cut(s) 473
SduI GDGCHC 1 cut(s) 342
SfaNI GCATC 2 cut(s) 82, 502
Sfr274I CTCGAG 1 cut(s) 76
SfuI TTCGAA 1 cut(s) 513
SlaI CTCGAG 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 4 cut(s) 76, 323, 383, 497
SmoI CTYRAG 4 cut(s) 76, 323, 383, 497
Sse9I AATT 2 cut(s) 106, 482
SsiI CCGC 4 cut(s) 95, 134, 275, 279
SspMI CTAG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 3 cut(s) 22, 316, 447
TaiI ACGT 3 cut(s) 339, 396, 462
TaqI TCGA 5 cut(s) 77, 357, 456, 462, 513
TasI AATT 2 cut(s) 106, 482
TatI WGTACW 2 cut(s) 80, 442
TauI GCSGC 3 cut(s) 137, 278, 281
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 2 cut(s) 32, 480
Tru9I TTAA 2 cut(s) 32, 480
TscAI CASTG 1 cut(s) 370
TseI GCWGC 2 cut(s) 71, 131
TspGWI ACGGA 1 cut(s) 430
TspRI CASTG 1 cut(s) 370
XagI CCTNNNNNAGG 1 cut(s) 404
XapI RAATTY 2 cut(s) 106, 482
XhoI CTCGAG 1 cut(s) 76
XmiI GTMKAC 2 cut(s) 357, 456
XspI CTAG 1 cut(s) 300
ZraI GACGTC 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.