Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001055

Physical Location & Seq

Genomic Coordinates Forward (+)

4771037 .. 4774233

Gene Structure 3197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g08000.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCTCGATCCCGGAGTGGATGATCGACGTCCCTCATCGCCCTCCCCAATTACTGATGACAGACCTCCTTCCATAACCAACCAAGAATCAAGCATCAGCTTTCTCTGTGTACCCTTTATGCAGAAGGTCATTGCTGAGGTGTTGGGGACATATTTCTTGATATTTGCTGGTTGTGGGGCTGTGGTGGTGAATTTGAACACAGACAAAACAGTGTCGTCTCCGGGGATTGCAATTGTTTGGGGACTTGTTGTGATGGTCATGATCTACTCTGTTGGTCACATCTCTGGTGCCCATTTCAATCCTGCTGTCACTATTGCTTTTGCTACTACTAAGAGGTTTCCATTGAAACAGGTACCCCCTTATGTTGTTGCTCAAGTCCTTGGATCAACGCTCGCAAGTGGTACCCTTAGGCTTATATTTAACAACCATCAAGACCACTTTGCAGGAACAAGTCCTAATGGAACTCCCCTGCAGTCTTTCGTGATTGAGTTCATCATCACATTTTACCTCATGTTTGTTGTTTCTGGTGTGGCCACTGATAACAGAGCGATTGGAGAGCTTGCAGGGCTTGCAGTTGGCTCCACGGTTCTTCTGAATGTGATGTTTGCAGGGCCAATTTCAGGAGCATCAATGAACCCAGCAAGAAGCTTAGGCCCTGCAATAGTGTCAAGTCATTACAAAAACCTGTGGATTTACCTTGTGGCACCAACTCTTGGAGCTGTATGTGGTGCCTTGGTTTATAATGTTATCAGATTTACGGATAAGCCTCTGCGAGAGCTCACCAAGACTGGATCTTTCTTGAAAGGCCCTGGCCGCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005215 GO:0005342 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009628 GO:0012505 GO:0012506 GO:0015075 GO:0015103 GO:0015105 GO:0015129 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015700 GO:0015711 GO:0015718 GO:0015727 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031347 GO:0031410 GO:0031982 GO:0034220 GO:0035873 GO:0036293 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046685 GO:0046942 GO:0046943 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0065007 GO:0070482 GO:0071702 GO:0071944 GO:0080134 GO:0080170 GO:0097708 GO:0098588 GO:0098656 GO:0098805 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

274

Amino Acids

29.06

Weight (kDa)

9.03

Isoelectric Point (pI)

36.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	37 - 247	6.7e-66	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31885 AT1G31885 AT1G31885 AT2G29870 AT2G34390 AT2G34390 AT2G34390 AT2G34390 AT4G18910 AT4G18910 AT4G19030 AT4G19030 AT4G19030
fragaria_vesca	FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07090 FvH4_6g07990 FvH4_6g08000 FvH4_6g08000 FvH4_6g08000
malus_domestica	MD00G1007200.v1.1 MD10G1273700.v1.1
prunus_persica	Prupe.4G068700_v2.0.a1
pyrus_communis	pycom05g27250 pycom10g22860
rosa_chinensis	RchiOBHm_Chr5g0012031 RchiOBHm_Chr5g0012041 RchiOBHm_Chr6g0279421
rosa_laevigata	RLG00000013147 RLG00000031880 RLG00000031881
rosa_multiflora	Rmu_sc0002519.1_g000006 Rmu_sc0020506.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064540 Rroxscaffold_1G00064560 Rroxscaffold_2G00109780 Rroxscaffold_7G00188910
rosa_rugosa	Rorug02G0319800 Rorug04G0460400 Rorug06G0124200
rosa_samantha	Rh5AG092600 Rh5BG088400 Rh5BG088600 Rh5CG102200 Rh5DG088900 Rh5DG089000 Rh6AG233100 Rh6BG237400 Rh6CG239600 Rh6DG231500
rosa_wichuraiana	Rw2G030270 Rw5G008080 Rw5G008090 Rw6G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	741
AatII	GACGTC	1 cut(s)	31
Acc65I	GGTACC	2 cut(s)	352, 401
AccB1I	GGYRCC	5 cut(s)	287, 352, 401, 703, 728
AccB7I	CCANNNNNTGG	1 cut(s)	713
AciI	CCGC	1 cut(s)	814
AclWI	GGATC	3 cut(s)	2, 391, 799
AcoI	YGGCCR	2 cut(s)	531, 811
AcsI	RAATTY	1 cut(s)	190
AcyI	GRCGYC	1 cut(s)	28
AfaI	GTAC	3 cut(s)	111, 354, 403
AfiI	CCNNNNNNNGG	2 cut(s)	620, 713
AgsI	TTSAA	4 cut(s)	196, 298, 346, 802
AjnI	CCWGG	1 cut(s)	808
AluBI	AGCT	5 cut(s)	99, 559, 648, 719, 778
AluI	AGCT	5 cut(s)	99, 559, 648, 719, 778
Alw21I	GWGCWC	1 cut(s)	780
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	3 cut(s)	2, 391, 799
AoxI	GGCC	5 cut(s)	531, 611, 652, 805, 811
ApoI	RAATTY	1 cut(s)	190
Asp718I	GGTACC	2 cut(s)	352, 401
AspS9I	GGNCC	3 cut(s)	611, 653, 806
AsuC2I	CCSGG	2 cut(s)	12, 222
AsuHPI	GGTGA	2 cut(s)	199, 772
AxyI	CCTNAGG	1 cut(s)	407
BaeGI	GKGCMC	1 cut(s)	292
BalI	TGGCCA	1 cut(s)	533
BanI	GGYRCC	5 cut(s)	287, 352, 401, 703, 728
BanII	GRGCYC	1 cut(s)	780
Bbv12I	GWGCWC	1 cut(s)	780
BbvCI	CCTCAGC	1 cut(s)	135
BccI	CCATC	2 cut(s)	247, 435
BciT130I	CCWGG	1 cut(s)	810
BcnI	CCSGG	2 cut(s)	12, 222
BcoDI	GTCTC	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	470
BisI	GCNGC	1 cut(s)	814
BlsI	GCNGC	1 cut(s)	815
Bme1390I	CCNGG	3 cut(s)	12, 222, 810
BmgT120I	GGNCC	3 cut(s)	611, 653, 806
BmiI	GGNNCC	6 cut(s)	289, 354, 403, 580, 705, 730
BmrFI	CCNGG	3 cut(s)	12, 222, 810
BmsI	GCATC	2 cut(s)	102, 635
Bpu10I	CCTNAGC	2 cut(s)	135, 649
BpuEI	CTTGAG	1 cut(s)	357
BpuMI	CCSGG	2 cut(s)	12, 222
BsaHI	GRCGYC	1 cut(s)	28
BsaJI	CCNNGG	5 cut(s)	221, 379, 582, 732, 808
Bsc4I	CCNNNNNNNGG	2 cut(s)	620, 713
Bse1I	ACTGG	1 cut(s)	793
Bse21I	CCTNAGG	1 cut(s)	407
Bse3DI	GCAATG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	810
BseDI	CCNNGG	5 cut(s)	221, 379, 582, 732, 808
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	2 cut(s)	620, 713
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	793
BseSI	GKGCMC	1 cut(s)	292
BseYI	CCCAGC	1 cut(s)	637
BshFI	GGCC	5 cut(s)	533, 613, 654, 807, 813
BshNI	GGYRCC	5 cut(s)	287, 352, 401, 703, 728
BsiHKAI	GWGCWC	1 cut(s)	780
BsiSI	CCGG	2 cut(s)	12, 221
BslFI	GGGAC	3 cut(s)	15, 160, 255
BslI	CCNNNNNNNGG	2 cut(s)	620, 713
BsmAI	GTCTC	1 cut(s)	222
BsmBI	CGTCTC	1 cut(s)	222
BsmFI	GGGAC	3 cut(s)	15, 160, 255
BsnI	GGCC	5 cut(s)	533, 613, 654, 807, 813
Bsp1286I	GDGCHC	2 cut(s)	292, 780
Bsp143I	GATC	5 cut(s)	7, 22, 261, 383, 791
BspACI	CCGC	1 cut(s)	814
BspANI	GGCC	5 cut(s)	533, 613, 654, 807, 813
BspCNI	CTCAG	1 cut(s)	127
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	6 cut(s)	289, 354, 403, 580, 705, 730
BspMAI	CTGCAG	1 cut(s)	474
BspPI	GGATC	3 cut(s)	2, 391, 799
BspT107I	GGYRCC	5 cut(s)	287, 352, 401, 703, 728
BsrDI	GCAATG	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	793
BssECI	CCNNGG	5 cut(s)	221, 379, 582, 732, 808
BssMI	GATC	5 cut(s)	7, 22, 261, 383, 791
BssNI	GRCGYC	1 cut(s)	28
BssT1I	CCWWGG	2 cut(s)	379, 732
Bst2UI	CCWGG	1 cut(s)	810
Bst4CI	ACNGT	2 cut(s)	211, 586
BstACI	GRCGYC	1 cut(s)	28
BstAPI	GCANNNNNTGC	1 cut(s)	569
BstC8I	GCNNGC	3 cut(s)	393, 561, 570
BstDEI	CTNAG	4 cut(s)	135, 330, 407, 649
BstDSI	CCRYGG	1 cut(s)	582
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	5 cut(s)	10, 25, 264, 386, 794
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	5 cut(s)	7, 22, 261, 383, 791
BstMWI	GCNNNNNNNGC	3 cut(s)	565, 569, 813
BstNI	CCWGG	1 cut(s)	810
BstSCI	CCNGG	3 cut(s)	10, 220, 808
BstSFI	CTRYAG	1 cut(s)	470
BstSLI	GKGCMC	1 cut(s)	292
BstX2I	RGATCY	1 cut(s)	791
BstYI	RGATCY	1 cut(s)	791
Bsu36I	CCTNAGG	1 cut(s)	407
BsuRI	GGCC	5 cut(s)	533, 613, 654, 807, 813
BtgI	CCRYGG	1 cut(s)	582
BtgZI	GCGATG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	216, 534
Cac8I	GCNNGC	3 cut(s)	393, 561, 570
CciI	TCATGA	1 cut(s)	258
Cfr13I	GGNCC	3 cut(s)	611, 653, 806
Csp6I	GTAC	3 cut(s)	110, 353, 402
CviAII	CATG	2 cut(s)	259, 511
CviQI	GTAC	3 cut(s)	110, 353, 402
DdeI	CTNAG	4 cut(s)	135, 330, 407, 649
DpnI	GATC	5 cut(s)	9, 24, 263, 385, 793
DpnII	GATC	5 cut(s)	7, 22, 261, 383, 791
EaeI	YGGCCR	2 cut(s)	531, 811
Ecl136II	GAGCTC	1 cut(s)	778
Eco130I	CCWWGG	2 cut(s)	379, 732
Eco24I	GRGCYC	1 cut(s)	780
Eco53kI	GAGCTC	1 cut(s)	778
Eco81I	CCTNAGG	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	778
EcoO109I	RGGNCCY	2 cut(s)	653, 806
EcoRII	CCWGG	1 cut(s)	808
EcoT14I	CCWWGG	2 cut(s)	379, 732
EcoT38I	GRGCYC	1 cut(s)	780
ErhI	CCWWGG	2 cut(s)	379, 732
Esp3I	CGTCTC	1 cut(s)	222
FaeI	CATG	2 cut(s)	262, 514
FaiI	YATR	9 cut(s)	74, 119, 151, 260, 363, 416, 512, 724, 741
FaqI	GGGAC	3 cut(s)	15, 160, 255
FatI	CATG	2 cut(s)	258, 510
Fnu4HI	GCNGC	1 cut(s)	814
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	780
Fsp4HI	GCNGC	1 cut(s)	814
GluI	GCNGC	1 cut(s)	814
GsaI	CCCAGC	1 cut(s)	641
HaeIII	GGCC	5 cut(s)	533, 613, 654, 807, 813
HapII	CCGG	2 cut(s)	12, 221
Hin1I	GRCGYC	1 cut(s)	28
Hin1II	CATG	2 cut(s)	262, 514
HindIII	AAGCTT	1 cut(s)	646
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	2 cut(s)	12, 221
HphI	GGTGA	2 cut(s)	199, 772
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	2 cut(s)	594, 752
Hpy188III	TCNNGA	6 cut(s)	157, 259, 431, 481, 621, 799
Hpy8I	GTNNAC	1 cut(s)	110
Hpy99I	CGWCG	1 cut(s)	30
HpyAV	CCTTC	2 cut(s)	78, 118
HpyCH4III	ACNGT	2 cut(s)	211, 586
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	8 cut(s)	121, 230, 443, 472, 563, 572, 608, 659
HpyF10VI	GCNNNNNNNGC	3 cut(s)	565, 569, 813
HpyF3I	CTNAG	4 cut(s)	135, 330, 407, 649
HpySE526I	ACGT	1 cut(s)	28
Hsp92I	GRCGYC	1 cut(s)	28
Hsp92II	CATG	2 cut(s)	262, 514
KpnI	GGTACC	2 cut(s)	356, 405
Kzo9I	GATC	5 cut(s)	7, 22, 261, 383, 791
LmnI	GCTCC	3 cut(s)	584, 623, 716
LweI	GCATC	2 cut(s)	102, 635
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	2 cut(s)	275, 307
MalI	GATC	5 cut(s)	9, 24, 263, 385, 793
MboI	GATC	5 cut(s)	7, 22, 261, 383, 791
MboII	GAAGA	1 cut(s)	581
MfeI	CAATTG	1 cut(s)	231
MflI	RGATCY	1 cut(s)	791
MhlI	GDGCHC	2 cut(s)	292, 780
MlsI	TGGCCA	1 cut(s)	533
MluCI	AATT	4 cut(s)	48, 190, 231, 615
MluNI	TGGCCA	1 cut(s)	533
MnlI	CCTC	7 cut(s)	43, 52, 75, 130, 327, 518, 777
Mox20I	TGGCCA	1 cut(s)	533
MscI	TGGCCA	1 cut(s)	533
MseI	TTAA	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	533
MspI	CCGG	2 cut(s)	12, 221
MspR9I	CCNGG	3 cut(s)	12, 222, 810
MunI	CAATTG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	810
MwoI	GCNNNNNNNGC	3 cut(s)	565, 569, 813
NciI	CCSGG	2 cut(s)	12, 222
NdeII	GATC	5 cut(s)	7, 22, 261, 383, 791
NlaIII	CATG	2 cut(s)	262, 514
NlaIV	GGNNCC	6 cut(s)	289, 354, 403, 580, 705, 730
NmuCI	GTSAC	2 cut(s)	275, 307
PagI	TCATGA	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	86
PflMI	CCANNNNNTGG	1 cut(s)	713
PfoI	TCCNGGA	1 cut(s)	10
PkrI	GCNGC	1 cut(s)	815
PsiI	TTATAA	1 cut(s)	741
Psp124BI	GAGCTC	1 cut(s)	780
Psp6I	CCWGG	1 cut(s)	808
PspFI	CCCAGC	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	808
PspN4I	GGNNCC	6 cut(s)	289, 354, 403, 580, 705, 730
PspPI	GGNCC	3 cut(s)	611, 653, 806
PstI	CTGCAG	1 cut(s)	474
PsuI	RGATCY	1 cut(s)	791
RsaI	GTAC	3 cut(s)	111, 354, 403
RsaNI	GTAC	3 cut(s)	110, 353, 402
SacI	GAGCTC	1 cut(s)	780
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	1 cut(s)	814
Sau3AI	GATC	5 cut(s)	7, 22, 261, 383, 791
Sau96I	GGNCC	3 cut(s)	611, 653, 806
ScrFI	CCNGG	3 cut(s)	12, 222, 810
SduI	GDGCHC	2 cut(s)	292, 780
SfaNI	GCATC	2 cut(s)	102, 635
SfcI	CTRYAG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
Sse9I	AATT	4 cut(s)	48, 190, 231, 615
SsiI	CCGC	1 cut(s)	814
SstI	GAGCTC	1 cut(s)	780
StyD4I	CCNGG	3 cut(s)	10, 220, 808
StyI	CCWWGG	2 cut(s)	379, 732
TaaI	ACNGT	2 cut(s)	211, 586
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	6, 25
TasI	AATT	4 cut(s)	48, 190, 231, 615
TauI	GCSGC	1 cut(s)	816
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	2 cut(s)	216, 541
TseFI	GTSAC	2 cut(s)	275, 307
Tsp45I	GTSAC	2 cut(s)	275, 307
TspDTI	ATGAA	2 cut(s)	481, 647
TspGWI	ACGGA	1 cut(s)	773
TspRI	CASTG	2 cut(s)	216, 541
Van91I	CCANNNNNTGG	1 cut(s)	713
XapI	RAATTY	1 cut(s)	190
ZraI	GACGTC	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.