Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001055

Physical Location & Seq

Genomic Coordinates Forward (+)

8012850 .. 8015606

Gene Structure 2757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29264

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGCTGTTTCACACCATAAGTGGGAGTTGTCCTCCTGAGTTTTTTTTCTCACTCCAGTCTTCAGGATTGAGAAAAACAAGCACAAGAAATTTTCTCCTTCTGAGTCGCTCTGTTCTCTCTCTTTCTATCTTTCTCTTCATCAGCTGTTTTTTGTGTTCTGAAGCCATGGCTGAGAATCATGCAAGTGATGGAAACCATGTTCTCAATGTAGAAGATGACAAACCTTCCTCCAAAACCAACCAAGAATCAAGCAGTAGCTTGCTCGGTGTACTTTTTTTGCAGAAGGTGATTGCTGAGGTGTTGGGGACATACTTCTTGATATTTGCTGGTTGTGGGGCTGTGGTAGTGAATTTCGACACAGATAAGATGGTGTCATCTCCGGCAGTTGCAATTGTTTGGGGACTGGTTGTCATGGTGATGATTTACTCTGTTGGTCACATCTCCGGTGCCCACTTCAATCCTGCTGTCACAATTGCTTTTGCTACTACTAAGAGGTTTCCATGGAAACAGGTACTCCCTTATATTGCTGCTCAAGTCCTTGGATCAACGCTCGCAAGTGTTTCTGGTGTGGCCACTGATAACAGAGCGATTGGAGAGCTTGCTGGGCTTGCAGTTGGCTCCACGATTCTTCTGAATGTGATGTTTGCAGGGCCAATTACAGGAGCCTCAATGAACCCAGCAAGAAGCTTAGGCCCTGCAATAGTATCAAGCCATTACAAAAACTTGTGGATTTACCTTGTGTCACCAACTCTTGGAGCTGTATGTGGTGCCCTGGTCTACAATGTTATCAGATTTACGGATAAGCCACTGCGGGAGCTCACCAAGAGTGGATCTTTCTTGAAAGGCGCAGGCTGCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005215 GO:0005342 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009628 GO:0012505 GO:0012506 GO:0015075 GO:0015103 GO:0015105 GO:0015129 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015700 GO:0015711 GO:0015718 GO:0015727 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031347 GO:0031410 GO:0031982 GO:0034220 GO:0035873 GO:0036293 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046685 GO:0046942 GO:0046943 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0065007 GO:0070482 GO:0071702 GO:0071944 GO:0080134 GO:0080170 GO:0097708 GO:0098588 GO:0098656 GO:0098805 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

286

Amino Acids

30.4

Weight (kDa)

8.74

Isoelectric Point (pI)

36.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	90 - 186	2.2e-28	Major intrinsic protein
MIP	PF00230	193 - 260	1.5e-21	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31885 AT1G31885 AT1G31885 AT2G29870 AT2G34390 AT2G34390 AT2G34390 AT2G34390 AT4G18910 AT4G18910 AT4G19030 AT4G19030 AT4G19030
fragaria_vesca	FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07090 FvH4_6g07990 FvH4_6g08000 FvH4_6g08000 FvH4_6g08000
malus_domestica	MD00G1007200.v1.1 MD10G1273700.v1.1
prunus_persica	Prupe.4G068700_v2.0.a1
pyrus_communis	pycom05g27250 pycom10g22860
rosa_chinensis	RchiOBHm_Chr5g0012031 RchiOBHm_Chr5g0012041 RchiOBHm_Chr6g0279421
rosa_laevigata	RLG00000013147 RLG00000031880 RLG00000031881
rosa_multiflora	Rmu_sc0002519.1_g000006 Rmu_sc0020506.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064540 Rroxscaffold_1G00064560 Rroxscaffold_2G00109780 Rroxscaffold_7G00188910
rosa_rugosa	Rorug02G0319800 Rorug04G0460400 Rorug06G0124200
rosa_samantha	Rh5AG092600 Rh5BG088400 Rh5BG088600 Rh5CG102200 Rh5DG088900 Rh5DG089000 Rh6AG233100 Rh6BG237400 Rh6CG239600 Rh6DG231500
rosa_wichuraiana	Rw2G030270 Rw5G008080 Rw5G008090 Rw6G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	446, 767
AccB7I	CCANNNNNTGG	1 cut(s)	752
AccI	GTMKAC	1 cut(s)	777
AciI	CCGC	1 cut(s)	811
AclWI	GGATC	2 cut(s)	550, 838
AcoI	YGGCCR	1 cut(s)	570
AcsI	RAATTY	2 cut(s)	88, 349
AcuI	CTGAAG	2 cut(s)	45, 180
AfaI	GTAC	2 cut(s)	270, 513
AfiI	CCNNNNNNNGG	3 cut(s)	21, 659, 752
AgsI	TTSAA	2 cut(s)	457, 841
AhdI	GACNNNNNGTC	1 cut(s)	407
AjnI	CCWGG	1 cut(s)	771
AloI	GAACNNNNNNTCC	2 cut(s)	183, 215
AluBI	AGCT	6 cut(s)	144, 258, 598, 687, 758, 817
AluI	AGCT	6 cut(s)	144, 258, 598, 687, 758, 817
Alw21I	GWGCWC	1 cut(s)	819
AlwI	GGATC	2 cut(s)	550, 838
AoxI	GGCC	3 cut(s)	570, 650, 691
ApeKI	GCWGC	2 cut(s)	527, 852
ApoI	RAATTY	2 cut(s)	88, 349
AspLEI	GCGC	1 cut(s)	848
AspS9I	GGNCC	2 cut(s)	650, 692
AsuHPI	GGTGA	4 cut(s)	298, 427, 735, 811
BaeGI	GKGCMC	2 cut(s)	451, 772
BalI	TGGCCA	1 cut(s)	572
BanI	GGYRCC	2 cut(s)	446, 767
BanII	GRGCYC	1 cut(s)	819
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	819
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	2 cut(s)	514, 839
BccI	CCATC	2 cut(s)	182, 361
BciT130I	CCWGG	1 cut(s)	773
BisI	GCNGC	2 cut(s)	528, 853
BlsI	GCNGC	2 cut(s)	529, 854
Bme1390I	CCNGG	1 cut(s)	773
BmeRI	GACNNNNNGTC	1 cut(s)	407
BmgT120I	GGNCC	2 cut(s)	650, 692
BmiI	GGNNCC	4 cut(s)	448, 619, 664, 769
BmrFI	CCNGG	1 cut(s)	773
BpiI	GAAGAC	1 cut(s)	51
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
BpmI	CTGGAG	1 cut(s)	38
Bpu10I	CCTNAGC	2 cut(s)	294, 688
BpuEI	CTTGAG	1 cut(s)	516
BsaJI	CCNNGG	4 cut(s)	165, 500, 538, 771
BsaWI	WCCGGW	1 cut(s)	443
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 659, 752
Bse1I	ACTGG	2 cut(s)	55, 408
BseBI	CCWGG	1 cut(s)	773
BseDI	CCNNGG	4 cut(s)	165, 500, 538, 771
BseLI	CCNNNNNNNGG	3 cut(s)	21, 659, 752
BseMII	CTCAG	4 cut(s)	27, 92, 162, 285
BseNI	ACTGG	2 cut(s)	55, 408
BseSI	GKGCMC	2 cut(s)	451, 772
BseXI	GCAGC	2 cut(s)	514, 839
BseYI	CCCAGC	2 cut(s)	602, 676
BsgI	GTGCAG	1 cut(s)	838
BshFI	GGCC	3 cut(s)	572, 652, 693
BshNI	GGYRCC	2 cut(s)	446, 767
BsiHKAI	GWGCWC	1 cut(s)	819
BsiSI	CCGG	2 cut(s)	380, 444
BslFI	GGGAC	2 cut(s)	319, 414
BslI	CCNNNNNNNGG	3 cut(s)	21, 659, 752
BsmFI	GGGAC	2 cut(s)	319, 414
BsnI	GGCC	3 cut(s)	572, 652, 693
Bsp1286I	GDGCHC	3 cut(s)	451, 772, 819
Bsp143I	GATC	2 cut(s)	542, 830
Bsp19I	CCATGG	2 cut(s)	165, 500
BspACI	CCGC	1 cut(s)	811
BspANI	GGCC	3 cut(s)	572, 652, 693
BspCNI	CTCAG	4 cut(s)	28, 93, 163, 286
BspLI	GGNNCC	4 cut(s)	448, 619, 664, 769
BspPI	GGATC	2 cut(s)	550, 838
BspT107I	GGYRCC	2 cut(s)	446, 767
BsrI	ACTGG	2 cut(s)	55, 408
BssECI	CCNNGG	4 cut(s)	165, 500, 538, 771
BssMI	GATC	2 cut(s)	542, 830
BssT1I	CCWWGG	3 cut(s)	165, 500, 538
Bst2UI	CCWGG	1 cut(s)	773
Bst6I	CTCTTC	1 cut(s)	140
BstC8I	GCNNGC	5 cut(s)	260, 552, 600, 609, 850
BstDEI	CTNAG	6 cut(s)	36, 101, 171, 294, 489, 688
BstDSI	CCRYGG	2 cut(s)	165, 500
BstHHI	GCGC	1 cut(s)	848
BstKTI	GATC	2 cut(s)	545, 833
BstMBI	GATC	2 cut(s)	542, 830
BstMWI	GCNNNNNNNGC	3 cut(s)	604, 608, 852
BstNI	CCWGG	1 cut(s)	773
BstSCI	CCNGG	1 cut(s)	771
BstSLI	GKGCMC	2 cut(s)	451, 772
BstV1I	GCAGC	2 cut(s)	514, 839
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	830
BstYI	RGATCY	1 cut(s)	830
BsuRI	GGCC	3 cut(s)	572, 652, 693
BtgI	CCRYGG	2 cut(s)	165, 500
BtsI	GCAGTG	1 cut(s)	806
BtsIMutI	CAGTG	2 cut(s)	573, 806
Cac8I	GCNNGC	5 cut(s)	260, 552, 600, 609, 850
CfoI	GCGC	1 cut(s)	848
Cfr13I	GGNCC	2 cut(s)	650, 692
Csp6I	GTAC	2 cut(s)	269, 512
CviAII	CATG	5 cut(s)	166, 179, 197, 412, 501
CviQI	GTAC	2 cut(s)	269, 512
DdeI	CTNAG	6 cut(s)	36, 101, 171, 294, 489, 688
DpnI	GATC	2 cut(s)	544, 832
DpnII	GATC	2 cut(s)	542, 830
DriI	GACNNNNNGTC	1 cut(s)	407
EaeI	YGGCCR	1 cut(s)	570
Eam1104I	CTCTTC	1 cut(s)	140
Eam1105I	GACNNNNNGTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	140
Ecl136II	GAGCTC	1 cut(s)	817
Eco130I	CCWWGG	3 cut(s)	165, 500, 538
Eco24I	GRGCYC	1 cut(s)	819
Eco53kI	GAGCTC	1 cut(s)	817
Eco57I	CTGAAG	2 cut(s)	45, 180
EcoICRI	GAGCTC	1 cut(s)	817
EcoO109I	RGGNCCY	1 cut(s)	692
EcoRII	CCWGG	1 cut(s)	771
EcoT14I	CCWWGG	3 cut(s)	165, 500, 538
EcoT38I	GRGCYC	1 cut(s)	819
ErhI	CCWWGG	3 cut(s)	165, 500, 538
FaeI	CATG	5 cut(s)	169, 182, 200, 415, 504
FaiI	YATR	9 cut(s)	17, 167, 180, 198, 310, 413, 502, 522, 763
FaqI	GGGAC	2 cut(s)	319, 414
FatI	CATG	5 cut(s)	165, 178, 196, 411, 500
FauI	CCCGC	1 cut(s)	804
FblI	GTMKAC	1 cut(s)	777
Fnu4HI	GCNGC	2 cut(s)	528, 853
FriOI	GRGCYC	1 cut(s)	819
Fsp4HI	GCNGC	2 cut(s)	528, 853
GlaI	GCGC	1 cut(s)	847
GluI	GCNGC	2 cut(s)	528, 853
GsaI	CCCAGC	2 cut(s)	606, 680
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	3 cut(s)	572, 652, 693
HapII	CCGG	2 cut(s)	380, 444
HhaI	GCGC	1 cut(s)	848
Hin1II	CATG	5 cut(s)	169, 182, 200, 415, 504
Hin6I	GCGC	1 cut(s)	846
HinP1I	GCGC	1 cut(s)	846
HindIII	AAGCTT	1 cut(s)	685
HinfI	GANTC	4 cut(s)	103, 175, 245, 625
HpaII	CCGG	2 cut(s)	380, 444
HphI	GGTGA	4 cut(s)	298, 427, 735, 811
Hpy166II	GTNNAC	2 cut(s)	269, 778
Hpy188I	TCNGA	4 cut(s)	102, 160, 633, 791
Hpy188III	TCNNGA	4 cut(s)	35, 63, 316, 838
Hpy8I	GTNNAC	2 cut(s)	269, 778
HpyAV	CCTTC	3 cut(s)	107, 234, 277
HpyCH4V	TGCA	7 cut(s)	182, 280, 389, 611, 647, 698, 855
HpyF10VI	GCNNNNNNNGC	3 cut(s)	604, 608, 852
HpyF3I	CTNAG	6 cut(s)	36, 101, 171, 294, 489, 688
Hsp92II	CATG	5 cut(s)	169, 182, 200, 415, 504
HspAI	GCGC	1 cut(s)	846
Kzo9I	GATC	2 cut(s)	542, 830
LmnI	GCTCC	4 cut(s)	623, 662, 755, 814
Lsp1109I	GCAGC	2 cut(s)	514, 839
MaeIII	GTNAC	3 cut(s)	434, 466, 741
MalI	GATC	2 cut(s)	544, 832
MboI	GATC	2 cut(s)	542, 830
MboII	GAAGA	4 cut(s)	51, 127, 224, 620
MfeI	CAATTG	2 cut(s)	390, 471
MflI	RGATCY	1 cut(s)	830
MhlI	GDGCHC	3 cut(s)	451, 772, 819
MlsI	TGGCCA	1 cut(s)	572
MluCI	AATT	5 cut(s)	88, 349, 390, 471, 654
MluNI	TGGCCA	1 cut(s)	572
MlyI	GAGTC	1 cut(s)	112
MnlI	CCTC	5 cut(s)	42, 238, 289, 486, 676
Mox20I	TGGCCA	1 cut(s)	572
MscI	TGGCCA	1 cut(s)	572
MslI	CAYNNNNRTG	2 cut(s)	183, 416
Msp20I	TGGCCA	1 cut(s)	572
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	2 cut(s)	380, 444
MspR9I	CCNGG	1 cut(s)	773
MunI	CAATTG	2 cut(s)	390, 471
MvaI	CCWGG	1 cut(s)	773
MwoI	GCNNNNNNNGC	3 cut(s)	604, 608, 852
NcoI	CCATGG	2 cut(s)	165, 500
NdeII	GATC	2 cut(s)	542, 830
NlaIII	CATG	5 cut(s)	169, 182, 200, 415, 504
NlaIV	GGNNCC	4 cut(s)	448, 619, 664, 769
NmuCI	GTSAC	3 cut(s)	434, 466, 741
PfeI	GAWTC	3 cut(s)	175, 245, 625
PflMI	CCANNNNNTGG	1 cut(s)	752
PkrI	GCNGC	2 cut(s)	529, 854
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	819
Psp6I	CCWGG	1 cut(s)	771
PspFI	CCCAGC	2 cut(s)	602, 676
PspGI	CCWGG	1 cut(s)	771
PspN4I	GGNNCC	4 cut(s)	448, 619, 664, 769
PspPI	GGNCC	2 cut(s)	650, 692
PsuI	RGATCY	1 cut(s)	830
PvuII	CAGCTG	1 cut(s)	144
RsaI	GTAC	2 cut(s)	270, 513
RsaNI	GTAC	2 cut(s)	269, 512
RseI	CAYNNNNRTG	2 cut(s)	183, 416
SacI	GAGCTC	1 cut(s)	819
SatI	GCNGC	2 cut(s)	528, 853
Sau3AI	GATC	2 cut(s)	542, 830
Sau96I	GGNCC	2 cut(s)	650, 692
SchI	GAGTC	1 cut(s)	112
ScrFI	CCNGG	1 cut(s)	773
SduI	GDGCHC	3 cut(s)	451, 772, 819
SmiMI	CAYNNNNRTG	2 cut(s)	183, 416
SmlI	CTYRAG	1 cut(s)	531
SmoI	CTYRAG	1 cut(s)	531
Sse9I	AATT	5 cut(s)	88, 349, 390, 471, 654
SsiI	CCGC	1 cut(s)	811
SstI	GAGCTC	1 cut(s)	819
StyD4I	CCNGG	1 cut(s)	771
StyI	CCWWGG	3 cut(s)	165, 500, 538
TaqI	TCGA	1 cut(s)	354
TasI	AATT	5 cut(s)	88, 349, 390, 471, 654
TatI	WGTACW	1 cut(s)	268
TfiI	GAWTC	3 cut(s)	175, 245, 625
TscAI	CASTG	2 cut(s)	580, 813
TseFI	GTSAC	3 cut(s)	434, 466, 741
TseI	GCWGC	2 cut(s)	527, 852
Tsp45I	GTSAC	3 cut(s)	434, 466, 741
TspDTI	ATGAA	2 cut(s)	127, 686
TspGWI	ACGGA	1 cut(s)	812
TspRI	CASTG	2 cut(s)	580, 813
Van91I	CCANNNNNTGG	1 cut(s)	752
XapI	RAATTY	2 cut(s)	88, 349
XmiI	GTMKAC	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.