Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001055

Physical Location & Seq

Genomic Coordinates Forward (+)

33990213 .. 33992144

Gene Structure 1932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00109780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCTGAGAATCTTGCAACCAATGGAAGCCATGTTCTCAATGTTGAAAATGACAAACCTTGCTCCAATACCAATCAAGAATCAAGCAGTAGCTTTTTCCATGTACCCTTTATGCAGAAGGTGATTGCTGAGGTGTTAGGGACATACTTTTTGATATTTACGGGTTGTGGGTCTGTGGTGGTGAATTTGAACACAGAAAATACAGTGTCGTTTCTAGGGATTGCAATAGTTTGGGGACTGGTTGTGATGGTCATGATTTACTCTGTTGGTCACATCTCTGGTGCTCATTTCAATCCTGCTGTCACTATTGCTTTTGCTACTACCAAGAGATTTCCATGGAAACAGATCGGAGAGCTTGCTGGGCTTGCAGTTGGCTCCACTGTTCTTCTGAATGTGTTGTTTGCAGGGCCAATTTCAGGAGCATCAATGAACCCAGCAAGAAGCTTAGGACCTGCAATAGTATCAAACCATTACAAAAACCTGTGGATTTACATTGTGTCACCAATTCTTGGAGCTGTATGTGGTGCCTTGGTCTACAATGTAATCAGATTTACAGATAAGCCACTGTGTGAGCTCACCAGGAGTGGCTCTTTCTTGAAAGGCGCATGCCGTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005215 GO:0005342 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009628 GO:0012505 GO:0012506 GO:0015075 GO:0015103 GO:0015105 GO:0015129 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015700 GO:0015711 GO:0015718 GO:0015727 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031347 GO:0031410 GO:0031982 GO:0034220 GO:0035873 GO:0036293 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046685 GO:0046942 GO:0046943 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0065007 GO:0070482 GO:0071702 GO:0071944 GO:0080134 GO:0080170 GO:0097708 GO:0098588 GO:0098656 GO:0098805 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

205

Amino Acids

21.93

Weight (kDa)

8.64

Isoelectric Point (pI)

23.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	34 - 114	9.5e-23	Major intrinsic protein
MIP	PF00230	105 - 179	2.3e-22	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31885 AT1G31885 AT1G31885 AT2G29870 AT2G34390 AT2G34390 AT2G34390 AT2G34390 AT4G18910 AT4G18910 AT4G19030 AT4G19030 AT4G19030
fragaria_vesca	FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07090 FvH4_6g07990 FvH4_6g08000 FvH4_6g08000 FvH4_6g08000
malus_domestica	MD00G1007200.v1.1 MD10G1273700.v1.1
prunus_persica	Prupe.4G068700_v2.0.a1
pyrus_communis	pycom05g27250 pycom10g22860
rosa_chinensis	RchiOBHm_Chr5g0012031 RchiOBHm_Chr5g0012041 RchiOBHm_Chr6g0279421
rosa_laevigata	RLG00000013147 RLG00000031880 RLG00000031881
rosa_multiflora	Rmu_sc0002519.1_g000006 Rmu_sc0020506.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064540 Rroxscaffold_1G00064560 Rroxscaffold_2G00109780 Rroxscaffold_7G00188910
rosa_rugosa	Rorug02G0319800 Rorug04G0460400 Rorug06G0124200
rosa_samantha	Rh5AG092600 Rh5BG088400 Rh5BG088600 Rh5CG102200 Rh5DG088900 Rh5DG089000 Rh6AG233100 Rh6BG237400 Rh6CG239600 Rh6DG231500
rosa_wichuraiana	Rw2G030270 Rw5G008080 Rw5G008090 Rw6G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	460
AccB1I	GGYRCC	1 cut(s)	524
AccB7I	CCANNNNNTGG	1 cut(s)	509
AccI	GTMKAC	1 cut(s)	534
AcsI	RAATTY	1 cut(s)	184
AdeI	CACNNNGTG	1 cut(s)	569
AfaI	GTAC	2 cut(s)	105, 613
AfiI	CCNNNNNNNGG	2 cut(s)	416, 509
AgsI	TTSAA	4 cut(s)	47, 190, 292, 598
AjnI	CCWGG	1 cut(s)	578
AloI	GAACNNNNNNTCC	2 cut(s)	18, 50
AluBI	AGCT	5 cut(s)	93, 355, 444, 515, 574
AluI	AGCT	5 cut(s)	93, 355, 444, 515, 574
Alw21I	GWGCWC	2 cut(s)	286, 576
AoxI	GGCC	1 cut(s)	407
ApoI	RAATTY	1 cut(s)	184
ArsI	GACNNNNNNTTYG	2 cut(s)	133, 165
AspLEI	GCGC	1 cut(s)	605
AspS9I	GGNCC	2 cut(s)	407, 449
AsuHPI	GGTGA	4 cut(s)	133, 193, 492, 568
AvaII	GGWCC	1 cut(s)	449
BanI	GGYRCC	1 cut(s)	524
BanII	GRGCYC	1 cut(s)	576
Bbv12I	GWGCWC	2 cut(s)	286, 576
BbvCI	CCTCAGC	1 cut(s)	129
BccI	CCATC	1 cut(s)	241
BceAI	ACGGC	1 cut(s)	594
BciT130I	CCWGG	1 cut(s)	580
BfaI	CTAG	1 cut(s)	215
BfuAI	ACCTGC	1 cut(s)	460
Bme1390I	CCNGG	1 cut(s)	580
Bme18I	GGWCC	1 cut(s)	449
BmgT120I	GGNCC	2 cut(s)	407, 449
BmiI	GGNNCC	2 cut(s)	376, 526
BmrFI	CCNGG	1 cut(s)	580
BmsI	GCATC	1 cut(s)	431
Bpu10I	CCTNAGC	2 cut(s)	129, 445
BsaJI	CCNNGG	2 cut(s)	335, 528
Bsc4I	CCNNNNNNNGG	2 cut(s)	416, 509
Bse1I	ACTGG	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	580
BseDI	CCNNGG	2 cut(s)	335, 528
BseLI	CCNNNNNNNGG	2 cut(s)	416, 509
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	243
BseYI	CCCAGC	2 cut(s)	359, 433
BshFI	GGCC	1 cut(s)	409
BshNI	GGYRCC	1 cut(s)	524
BsiHKAI	GWGCWC	2 cut(s)	286, 576
BslFI	GGGAC	2 cut(s)	154, 249
BslI	CCNNNNNNNGG	2 cut(s)	416, 509
BsmFI	GGGAC	2 cut(s)	154, 249
BsnI	GGCC	1 cut(s)	409
Bsp1286I	GDGCHC	2 cut(s)	286, 576
Bsp143I	GATC	1 cut(s)	345
Bsp19I	CCATGG	1 cut(s)	335
BspANI	GGCC	1 cut(s)	409
BspCNI	CTCAG	1 cut(s)	121
BspHI	TCATGA	1 cut(s)	252
BspLI	GGNNCC	2 cut(s)	376, 526
BspMI	ACCTGC	1 cut(s)	460
BspT107I	GGYRCC	1 cut(s)	524
BsrI	ACTGG	1 cut(s)	243
BssECI	CCNNGG	2 cut(s)	335, 528
BssMI	GATC	1 cut(s)	345
BssT1I	CCWWGG	2 cut(s)	335, 528
Bst2UI	CCWGG	1 cut(s)	580
Bst4CI	ACNGT	3 cut(s)	205, 382, 567
BstC8I	GCNNGC	3 cut(s)	357, 366, 607
BstDEI	CTNAG	3 cut(s)	6, 129, 445
BstDSI	CCRYGG	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	605
BstKTI	GATC	1 cut(s)	348
BstMBI	GATC	1 cut(s)	345
BstMWI	GCNNNNNNNGC	2 cut(s)	361, 365
BstNI	CCWGG	1 cut(s)	580
BstNSI	RCATGY	1 cut(s)	609
BstSCI	CCNGG	1 cut(s)	578
BsuRI	GGCC	1 cut(s)	409
BtgI	CCRYGG	1 cut(s)	335
BtsIMutI	CAGTG	3 cut(s)	210, 378, 563
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	3 cut(s)	357, 366, 607
CciI	TCATGA	1 cut(s)	252
CfoI	GCGC	1 cut(s)	605
Cfr13I	GGNCC	2 cut(s)	407, 449
Csp6I	GTAC	2 cut(s)	104, 612
CviAII	CATG	5 cut(s)	32, 101, 253, 336, 606
CviQI	GTAC	2 cut(s)	104, 612
DdeI	CTNAG	3 cut(s)	6, 129, 445
DpnI	GATC	1 cut(s)	347
DpnII	GATC	1 cut(s)	345
DraIII	CACNNNGTG	1 cut(s)	569
Ecl136II	GAGCTC	1 cut(s)	574
Eco130I	CCWWGG	2 cut(s)	335, 528
Eco24I	GRGCYC	1 cut(s)	576
Eco47I	GGWCC	1 cut(s)	449
Eco53kI	GAGCTC	1 cut(s)	574
EcoICRI	GAGCTC	1 cut(s)	574
EcoO109I	RGGNCCY	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	578
EcoT14I	CCWWGG	2 cut(s)	335, 528
EcoT38I	GRGCYC	1 cut(s)	576
ErhI	CCWWGG	2 cut(s)	335, 528
FaeI	CATG	5 cut(s)	35, 104, 256, 339, 609
FaiI	YATR	8 cut(s)	33, 102, 113, 145, 254, 337, 520, 607
FaqI	GGGAC	2 cut(s)	154, 249
FatI	CATG	5 cut(s)	31, 100, 252, 335, 605
FblI	GTMKAC	1 cut(s)	534
FriOI	GRGCYC	1 cut(s)	576
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	1 cut(s)	604
GsaI	CCCAGC	2 cut(s)	363, 437
HaeIII	GGCC	1 cut(s)	409
HhaI	GCGC	1 cut(s)	605
Hin1II	CATG	5 cut(s)	35, 104, 256, 339, 609
Hin6I	GCGC	1 cut(s)	603
HinP1I	GCGC	1 cut(s)	603
HindIII	AAGCTT	1 cut(s)	442
HinfI	GANTC	2 cut(s)	10, 80
HphI	GGTGA	4 cut(s)	133, 193, 492, 568
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188I	TCNGA	3 cut(s)	350, 390, 548
Hpy188III	TCNNGA	4 cut(s)	77, 253, 417, 595
Hpy8I	GTNNAC	1 cut(s)	535
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	3 cut(s)	205, 382, 567
HpyCH4V	TGCA	6 cut(s)	17, 115, 224, 368, 404, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	361, 365
HpyF3I	CTNAG	3 cut(s)	6, 129, 445
Hsp92II	CATG	5 cut(s)	35, 104, 256, 339, 609
HspAI	GCGC	1 cut(s)	603
Kzo9I	GATC	1 cut(s)	345
LmnI	GCTCC	4 cut(s)	68, 380, 419, 512
LweI	GCATC	1 cut(s)	431
MaeI	CTAG	1 cut(s)	215
MaeIII	GTNAC	3 cut(s)	269, 301, 498
MalI	GATC	1 cut(s)	347
MboI	GATC	1 cut(s)	345
MboII	GAAGA	1 cut(s)	377
MhlI	GDGCHC	2 cut(s)	286, 576
MluCI	AATT	3 cut(s)	184, 411, 504
MnlI	CCTC	1 cut(s)	124
MspR9I	CCNGG	1 cut(s)	580
MvaI	CCWGG	1 cut(s)	580
MwoI	GCNNNNNNNGC	2 cut(s)	361, 365
NcoI	CCATGG	1 cut(s)	335
NdeII	GATC	1 cut(s)	345
NlaIII	CATG	5 cut(s)	35, 104, 256, 339, 609
NlaIV	GGNNCC	2 cut(s)	376, 526
NmuCI	GTSAC	3 cut(s)	269, 301, 498
NspI	RCATGY	1 cut(s)	609
PaeI	GCATGC	1 cut(s)	609
PagI	TCATGA	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	10, 80
PflMI	CCANNNNNTGG	1 cut(s)	509
PpuMI	RGGWCCY	1 cut(s)	449
Psp124BI	GAGCTC	1 cut(s)	576
Psp5II	RGGWCCY	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	578
PspFI	CCCAGC	2 cut(s)	359, 433
PspGI	CCWGG	1 cut(s)	578
PspN4I	GGNNCC	2 cut(s)	376, 526
PspPI	GGNCC	2 cut(s)	407, 449
PspPPI	RGGWCCY	1 cut(s)	449
RsaI	GTAC	2 cut(s)	105, 613
RsaNI	GTAC	2 cut(s)	104, 612
SacI	GAGCTC	1 cut(s)	576
Sau3AI	GATC	1 cut(s)	345
Sau96I	GGNCC	2 cut(s)	407, 449
ScrFI	CCNGG	1 cut(s)	580
SduI	GDGCHC	2 cut(s)	286, 576
SfaNI	GCATC	1 cut(s)	431
SinI	GGWCC	1 cut(s)	449
SphI	GCATGC	1 cut(s)	609
Sse9I	AATT	3 cut(s)	184, 411, 504
SspMI	CTAG	1 cut(s)	215
SstI	GAGCTC	1 cut(s)	576
StyD4I	CCNGG	1 cut(s)	578
StyI	CCWWGG	2 cut(s)	335, 528
TaaI	ACNGT	3 cut(s)	205, 382, 567
TasI	AATT	3 cut(s)	184, 411, 504
TfiI	GAWTC	2 cut(s)	10, 80
TscAI	CASTG	3 cut(s)	210, 385, 570
TseFI	GTSAC	3 cut(s)	269, 301, 498
Tsp45I	GTSAC	3 cut(s)	269, 301, 498
TspDTI	ATGAA	1 cut(s)	443
TspRI	CASTG	3 cut(s)	210, 385, 570
Van91I	CCANNNNNTGG	1 cut(s)	509
VpaK11BI	GGWCC	1 cut(s)	449
XapI	RAATTY	1 cut(s)	184
XceI	RCATGY	1 cut(s)	609
XmiI	GTMKAC	1 cut(s)	534
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.