Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001055

Physical Location & Seq

Genomic Coordinates Reverse (-)

14514487 .. 14515988

Gene Structure 1502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G34390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGATGACATATCAGTGAGCAAAAGCAACCACGGAAATGTTGTTGTGCTCAACATCAAAGCGTCTTCTCTTGCAGACACTTCTCTTCCTTCCAACAAACACGAGTCATCGTCCCCGCCTTTGCTCTCTGTCCATTTCTTGCAAAAGCTCTTAGCGGAGCTCGTTGGAACTTACTATCTGATATTTGCTGGCTGTGCCGCCATTGCCGTGAATGCTCAACACAACCATGTAGTGACTCTTGTGGGGATTGCTGTGGTTTGGGGTATAGTGATAATGGTTCTTGTTTACTGTCTCGGCCACCTCTCTGCACATTTCAATCCTGCTGTCACTCTTGCCTTAGCATCTTCCCAAAGATTCCCTCTGAATCAAGTCCCGGCCTACATAACTGTTCAAGTCATCGGATCAACCTTGGCATCTGCGACTCTGCGTCTTCTGTTTGATCTGAACAATGATGTGTGCAGCAAGAAACATGATGTCTTCCTCGGGTCATCTCCTTCTGGGTCTGATCTTCAAGCATTCGTGATGGAGTTCATCATTACCGGCTTCCTCATGTTAGTCGTCTGTGCCGTCACAACCACCAAGAGAACTACAGAGGAACTAGAGGGGCTAATCATTGGGGCAACCGTCACACTGAATGTTATATTTGCTGGAGAGGTATCAGGAGCATCGATGAATCCAGCCAGAAGCATAGGACCTGCACTTGTGTGGGGATGTTACAAAGGGATTTGGATATACTTGCTGGCTCCAACACTTGGTGCCGTCTCTGGGGCCTTGATTCATAAAATGTTACCGTCAATACAGAACGCAGAGCCTGAGTTCTCCAAGACAGGATCTTCTCATAAACGAGTTACCGATCTTCCTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005215 GO:0005342 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009628 GO:0012505 GO:0012506 GO:0015075 GO:0015103 GO:0015105 GO:0015129 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015700 GO:0015711 GO:0015718 GO:0015727 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031347 GO:0031410 GO:0031982 GO:0034220 GO:0035873 GO:0036293 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046685 GO:0046942 GO:0046943 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0065007 GO:0070482 GO:0071702 GO:0071944 GO:0080134 GO:0080170 GO:0097708 GO:0098588 GO:0098656 GO:0098805 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

288

Amino Acids

30.58

Weight (kDa)

6.78

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	43 - 260	5.4e-57	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31885 AT1G31885 AT1G31885 AT2G29870 AT2G34390 AT2G34390 AT2G34390 AT2G34390 AT4G18910 AT4G18910 AT4G19030 AT4G19030 AT4G19030
fragaria_vesca	FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07090 FvH4_6g07990 FvH4_6g08000 FvH4_6g08000 FvH4_6g08000
malus_domestica	MD00G1007200.v1.1 MD10G1273700.v1.1
prunus_persica	Prupe.4G068700_v2.0.a1
pyrus_communis	pycom05g27250 pycom10g22860
rosa_chinensis	RchiOBHm_Chr5g0012031 RchiOBHm_Chr5g0012041 RchiOBHm_Chr6g0279421
rosa_laevigata	RLG00000013147 RLG00000031880 RLG00000031881
rosa_multiflora	Rmu_sc0002519.1_g000006 Rmu_sc0020506.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064540 Rroxscaffold_1G00064560 Rroxscaffold_2G00109780 Rroxscaffold_7G00188910
rosa_rugosa	Rorug02G0319800 Rorug04G0460400 Rorug06G0124200
rosa_samantha	Rh5AG092600 Rh5BG088400 Rh5BG088600 Rh5CG102200 Rh5DG088900 Rh5DG089000 Rh6AG233100 Rh6BG237400 Rh6CG239600 Rh6DG231500
rosa_wichuraiana	Rw2G030270 Rw5G008080 Rw5G008090 Rw6G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	703
AccB1I	GGYRCC	1 cut(s)	755
AccB7I	CCANNNNNTGG	1 cut(s)	752
AciI	CCGC	3 cut(s)	116, 155, 198
AclWI	GGATC	2 cut(s)	409, 838
AcoI	YGGCCR	1 cut(s)	295
AdeI	CACNNNGTG	1 cut(s)	755
AfiI	CCNNNNNNNGG	2 cut(s)	752, 765
AgsI	TTSAA	3 cut(s)	316, 392, 512
AhdI	GACNNNNNGTC	1 cut(s)	426
AleI	CACNNNNGTG	1 cut(s)	703
AluBI	AGCT	2 cut(s)	148, 160
AluI	AGCT	2 cut(s)	148, 160
Alw21I	GWGCWC	2 cut(s)	51, 162
Alw26I	GTCTC	2 cut(s)	296, 766
AlwI	GGATC	2 cut(s)	409, 838
AlwNI	CAGNNNCTG	1 cut(s)	812
Ama87I	CYCGRG	1 cut(s)	482
AoxI	GGCC	3 cut(s)	295, 375, 768
ApeKI	GCWGC	1 cut(s)	459
AspS9I	GGNCC	2 cut(s)	692, 768
AsuC2I	CCSGG	1 cut(s)	374
AvaI	CYCGRG	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	692
BanI	GGYRCC	1 cut(s)	755
BanII	GRGCYC	1 cut(s)	162
BauI	CACGAG	1 cut(s)	101
BbsI	GAAGAC	3 cut(s)	57, 422, 469
Bbv12I	GWGCWC	2 cut(s)	51, 162
BbvI	GCAGC	1 cut(s)	471
BccI	CCATC	1 cut(s)	517
BceAI	ACGGC	3 cut(s)	191, 551, 743
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	2 cut(s)	296, 766
BfaI	CTAG	1 cut(s)	599
BfmI	CTRYAG	1 cut(s)	588
BfuAI	ACCTGC	1 cut(s)	703
BisI	GCNGC	2 cut(s)	198, 460
BlsI	GCNGC	2 cut(s)	199, 461
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	1 cut(s)	692
BmeRI	GACNNNNNGTC	1 cut(s)	426
BmeT110I	CYCGRG	1 cut(s)	482
BmgT120I	GGNCC	2 cut(s)	692, 768
BmiI	GGNNCC	3 cut(s)	744, 757, 769
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	3 cut(s)	350, 422, 674
BpiI	GAAGAC	3 cut(s)	57, 422, 469
BpmI	CTGGAG	1 cut(s)	669
Bpu10I	CCTNAGC	1 cut(s)	337
BpuMI	CCSGG	1 cut(s)	374
Bsa29I	ATCGAT	1 cut(s)	668
BsaJI	CCNNGG	3 cut(s)	31, 408, 481
Bsc4I	CCNNNNNNNGG	2 cut(s)	752, 765
Bse118I	RCCGGY	1 cut(s)	539
Bse3DI	GCAATG	1 cut(s)	201
BseCI	ATCGAT	1 cut(s)	668
BseDI	CCNNGG	3 cut(s)	31, 408, 481
BseGI	GGATG	2 cut(s)	10, 716
BseLI	CCNNNNNNNGG	2 cut(s)	752, 765
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	804
BseXI	GCAGC	1 cut(s)	471
BsgI	GTGCAG	3 cut(s)	291, 478, 681
BshFI	GGCC	3 cut(s)	297, 377, 770
BshNI	GGYRCC	1 cut(s)	755
BshVI	ATCGAT	1 cut(s)	668
BsiHKAI	GWGCWC	2 cut(s)	51, 162
BsiHKCI	CYCGRG	1 cut(s)	482
BsiSI	CCGG	2 cut(s)	374, 540
BslFI	GGGAC	2 cut(s)	97, 356
BslI	CCNNNNNNNGG	2 cut(s)	752, 765
BsmAI	GTCTC	2 cut(s)	296, 766
BsmBI	CGTCTC	1 cut(s)	766
BsmFI	GGGAC	2 cut(s)	97, 356
BsmI	GAATGC	2 cut(s)	217, 515
BsnI	GGCC	3 cut(s)	297, 377, 770
BsoBI	CYCGRG	1 cut(s)	482
Bsp1286I	GDGCHC	2 cut(s)	51, 162
Bsp143I	GATC	5 cut(s)	401, 439, 505, 830, 853
BspACI	CCGC	3 cut(s)	116, 155, 198
BspANI	GGCC	3 cut(s)	297, 377, 770
BspCNI	CTCAG	1 cut(s)	805
BspDI	ATCGAT	1 cut(s)	668
BspLI	GGNNCC	3 cut(s)	744, 757, 769
BspMI	ACCTGC	1 cut(s)	703
BspPI	GGATC	2 cut(s)	409, 838
BspT107I	GGYRCC	1 cut(s)	755
BsrDI	GCAATG	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	539
BssAI	RCCGGY	1 cut(s)	539
BssECI	CCNNGG	3 cut(s)	31, 408, 481
BssMI	GATC	5 cut(s)	401, 439, 505, 830, 853
BssSI	CACGAG	1 cut(s)	101
BssT1I	CCWWGG	1 cut(s)	408
Bst2BI	CACGAG	1 cut(s)	101
Bst4CI	ACNGT	4 cut(s)	290, 388, 625, 792
Bst6I	CTCTTC	1 cut(s)	90
BstC8I	GCNNGC	2 cut(s)	190, 741
BstDEI	CTNAG	3 cut(s)	151, 337, 813
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	2 cut(s)	10, 716
BstKTI	GATC	5 cut(s)	404, 442, 508, 833, 856
BstMAI	GTCTC	2 cut(s)	296, 766
BstMBI	GATC	5 cut(s)	401, 439, 505, 830, 853
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 203, 212
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	1 cut(s)	588
BstV1I	GCAGC	1 cut(s)	471
BstV2I	GAAGAC	3 cut(s)	57, 422, 469
BstX2I	RGATCY	1 cut(s)	830
BstYI	RGATCY	1 cut(s)	830
Bsu15I	ATCGAT	1 cut(s)	668
BsuRI	GGCC	3 cut(s)	297, 377, 770
BsuTUI	ATCGAT	1 cut(s)	668
BtgI	CCRYGG	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	10, 716
BtsIMutI	CAGTG	2 cut(s)	21, 629
BveI	ACCTGC	1 cut(s)	703
Cac8I	GCNNGC	2 cut(s)	190, 741
CaiI	CAGNNNCTG	1 cut(s)	812
Cfr10I	RCCGGY	1 cut(s)	539
Cfr13I	GGNCC	2 cut(s)	692, 768
ClaI	ATCGAT	1 cut(s)	668
CseI	GACGC	2 cut(s)	51, 416
CviAII	CATG	3 cut(s)	227, 470, 550
DdeI	CTNAG	3 cut(s)	151, 337, 813
DpnI	GATC	5 cut(s)	403, 441, 507, 832, 855
DpnII	GATC	5 cut(s)	401, 439, 505, 830, 853
DraIII	CACNNNGTG	1 cut(s)	755
DriI	GACNNNNNGTC	1 cut(s)	426
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	90
Eam1105I	GACNNNNNGTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	90
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	408
Eco24I	GRGCYC	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	692
Eco53kI	GAGCTC	1 cut(s)	160
Eco88I	CYCGRG	1 cut(s)	482
EcoICRI	GAGCTC	1 cut(s)	160
EcoO109I	RGGNCCY	2 cut(s)	692, 768
EcoT14I	CCWWGG	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	408
Esp3I	CGTCTC	1 cut(s)	766
FaeI	CATG	3 cut(s)	230, 473, 553
FaqI	GGGAC	2 cut(s)	97, 356
FatI	CATG	3 cut(s)	226, 469, 549
FauI	CCCGC	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	198, 460
FokI	GGATG	2 cut(s)	17, 723
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	2 cut(s)	198, 460
FspBI	CTAG	1 cut(s)	599
GluI	GCNGC	2 cut(s)	198, 460
GsuI	CTGGAG	1 cut(s)	669
HaeIII	GGCC	3 cut(s)	297, 377, 770
HapII	CCGG	2 cut(s)	374, 540
HgaI	GACGC	2 cut(s)	51, 416
Hin1II	CATG	3 cut(s)	230, 473, 553
HinfI	GANTC	7 cut(s)	104, 235, 354, 364, 421, 673, 775
HpaII	CCGG	2 cut(s)	374, 540
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	5 cut(s)	180, 363, 401, 444, 505
Hpy188III	TCNNGA	2 cut(s)	520, 660
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	2 cut(s)	99, 504
HpyCH4III	ACNGT	4 cut(s)	290, 388, 625, 792
HpyCH4V	TGCA	5 cut(s)	74, 142, 308, 459, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 203, 212
HpyF3I	CTNAG	3 cut(s)	151, 337, 813
Hsp92II	CATG	3 cut(s)	230, 473, 553
Kzo9I	GATC	5 cut(s)	401, 439, 505, 830, 853
LmnI	GCTCC	3 cut(s)	157, 662, 748
Lsp1109I	GCAGC	1 cut(s)	471
LweI	GCATC	3 cut(s)	350, 422, 674
MaeI	CTAG	1 cut(s)	599
MaeIII	GTNAC	7 cut(s)	232, 325, 568, 625, 713, 786, 847
MalI	GATC	5 cut(s)	403, 441, 507, 832, 855
MboI	GATC	5 cut(s)	401, 439, 505, 830, 853
MboII	GAAGA	8 cut(s)	57, 77, 336, 422, 469, 500, 825, 848
MflI	RGATCY	1 cut(s)	830
MhlI	GDGCHC	2 cut(s)	51, 162
MlyI	GAGTC	3 cut(s)	113, 229, 415
MmeI	TCCRAC	3 cut(s)	117, 145, 770
MnlI	CCTC	7 cut(s)	311, 369, 491, 557, 586, 595, 646
MslI	CAYNNNNRTG	5 cut(s)	14, 36, 206, 225, 703
MspI	CCGG	2 cut(s)	374, 540
MspR9I	CCNGG	1 cut(s)	374
Mva1269I	GAATGC	2 cut(s)	217, 515
MwoI	GCNNNNNNNGC	3 cut(s)	194, 203, 212
NciI	CCSGG	1 cut(s)	374
NdeII	GATC	5 cut(s)	401, 439, 505, 830, 853
NlaIII	CATG	3 cut(s)	230, 473, 553
NlaIV	GGNNCC	3 cut(s)	744, 757, 769
NmeAIII	GCCGAG	1 cut(s)	273
NmuCI	GTSAC	4 cut(s)	232, 325, 568, 625
OliI	CACNNNNGTG	1 cut(s)	703
PcsI	WCGNNNNNNNCGW	1 cut(s)	564
PctI	GAATGC	2 cut(s)	217, 515
PfeI	GAWTC	4 cut(s)	354, 364, 673, 775
PflMI	CCANNNNNTGG	1 cut(s)	752
PkrI	GCNGC	2 cut(s)	199, 461
PleI	GAGTC	3 cut(s)	112, 229, 415
PpsI	GAGTC	3 cut(s)	112, 229, 415
PpuMI	RGGWCCY	1 cut(s)	692
Psp124BI	GAGCTC	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	692
PspN4I	GGNNCC	3 cut(s)	744, 757, 769
PspPI	GGNCC	2 cut(s)	692, 768
PspPPI	RGGWCCY	1 cut(s)	692
PstNI	CAGNNNCTG	1 cut(s)	812
PsuI	RGATCY	1 cut(s)	830
RseI	CAYNNNNRTG	5 cut(s)	14, 36, 206, 225, 703
SacI	GAGCTC	1 cut(s)	162
SatI	GCNGC	2 cut(s)	198, 460
Sau3AI	GATC	5 cut(s)	401, 439, 505, 830, 853
Sau96I	GGNCC	2 cut(s)	692, 768
SchI	GAGTC	3 cut(s)	113, 229, 415
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	2 cut(s)	51, 162
SetI	ASST	6 cut(s)	150, 162, 303, 410, 657, 697
SfaNI	GCATC	3 cut(s)	350, 422, 674
SfcI	CTRYAG	1 cut(s)	588
SinI	GGWCC	1 cut(s)	692
SmiMI	CAYNNNNRTG	5 cut(s)	14, 36, 206, 225, 703
SsiI	CCGC	3 cut(s)	116, 155, 198
SspMI	CTAG	1 cut(s)	599
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	372
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	4 cut(s)	290, 388, 625, 792
TaqI	TCGA	1 cut(s)	668
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	4 cut(s)	354, 364, 673, 775
TscAI	CASTG	2 cut(s)	21, 636
TseFI	GTSAC	4 cut(s)	232, 325, 568, 625
TseI	GCWGC	1 cut(s)	459
Tsp45I	GTSAC	4 cut(s)	232, 325, 568, 625
TspDTI	ATGAA	3 cut(s)	520, 686, 767
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	2 cut(s)	21, 636
Van91I	CCANNNNNTGG	1 cut(s)	752
VpaK11BI	GGWCC	1 cut(s)	692
XspI	CTAG	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.