Rw2G030270

Belongs to the MIP aquaporin (TC 1.A.8) family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
49551169 .. 49553388
2220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G030270.1

Sequence Viewer

Length: 390 bp
ATGGCTGAGAATCTTGCAACCAATGGAAGCCATGTCCTCAATGTTGAAAATGATAAACCTTGCTCCAATACCAATCAAGAATCAAGCAGTAGCTTTTTCTATGTAATTGCTGAGGTGTTGGGGACATACTTTTTTATATTTACGGGTTGTGGGTCTGTGGTGGTGAATTTGAACACAGAAAATACGGTGTCGTTTCCAGGGATTGCAATAGTTTGGGGACTGGTTGTGAAGGTCATGATTTACTCTGTTGGTCACATCTCTGGTGCTCATTTCAATCCTGCTGTCACTATTGCTTTTGCTGCTACCAAGAGATTTCCATGGAAACAGGTTATTCCTTTCCGAGTAAGACCGTTCCTTTATAGTCGAAACTTGAAAACAAGATTACCTTGA

Protein Analysis

129

Amino Acids

14.28

Weight (kDa)

9.34

Isoelectric Point (pI)

25.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIP PF00230 31 - 115 5.6e-24 Major intrinsic protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 166
AgsI TTSAA 4 cut(s) 47, 172, 274, 373
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 1 cut(s) 93
AluI AGCT 1 cut(s) 93
Alw21I GWGCWC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 175
Bbv12I GWGCWC 1 cut(s) 268
BbvCI CCTCAGC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 286
BciT130I CCWGG 1 cut(s) 198
BisI GCNGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 301
Bme1390I CCNGG 1 cut(s) 198
BmrFI CCNGG 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 197, 317
Bse1I ACTGG 1 cut(s) 225
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 2 cut(s) 197, 317
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 225
BseXI GCAGC 1 cut(s) 286
BsiHKAI GWGCWC 1 cut(s) 268
BslFI GGGAC 2 cut(s) 136, 231
BsmFI GGGAC 2 cut(s) 136, 231
Bsp1286I GDGCHC 1 cut(s) 268
Bsp19I CCATGG 1 cut(s) 317
BspCNI CTCAG 1 cut(s) 103
BspHI TCATGA 1 cut(s) 234
BsrI ACTGG 1 cut(s) 225
BssECI CCNNGG 2 cut(s) 197, 317
BssT1I CCWWGG 1 cut(s) 317
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 2 cut(s) 187, 351
BstDEI CTNAG 2 cut(s) 6, 111
BstDSI CCRYGG 1 cut(s) 317
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 286
BtgI CCRYGG 1 cut(s) 317
CciI TCATGA 1 cut(s) 234
CviAII CATG 3 cut(s) 32, 235, 318
CviJI RGCY 3 cut(s) 5, 30, 93
CviKI_1 RGCY 3 cut(s) 5, 30, 93
DdeI CTNAG 2 cut(s) 6, 111
Eco130I CCWWGG 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 317
ErhI CCWWGG 1 cut(s) 317
FaeI CATG 3 cut(s) 35, 238, 321
FaiI YATR 7 cut(s) 33, 102, 127, 137, 236, 319, 360
FalI AAGNNNNNCTT 1 cut(s) 370
FaqI GGGAC 2 cut(s) 136, 231
FatI CATG 3 cut(s) 31, 234, 317
Fnu4HI GCNGC 1 cut(s) 300
Fsp4HI GCNGC 1 cut(s) 300
GluI GCNGC 1 cut(s) 300
Hin1II CATG 3 cut(s) 35, 238, 321
HinfI GANTC 2 cut(s) 10, 80
HphI GGTGA 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 341
Hpy188III TCNNGA 2 cut(s) 77, 235
HpyAV CCTTC 1 cut(s) 223
HpyCH4III ACNGT 2 cut(s) 187, 351
HpyCH4V TGCA 2 cut(s) 17, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpyF3I CTNAG 2 cut(s) 6, 111
Hsp92II CATG 3 cut(s) 35, 238, 321
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 6 cut(s) 183, 206, 210, 246, 291, 311
Lsp1109I GCAGC 1 cut(s) 286
MaeIII GTNAC 2 cut(s) 251, 283
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 2 cut(s) 105, 166
MnlI CCTC 2 cut(s) 47, 106
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 299
NcoI CCATGG 1 cut(s) 317
NlaIII CATG 3 cut(s) 35, 238, 321
NmuCI GTSAC 2 cut(s) 251, 283
PagI TCATGA 1 cut(s) 234
PfeI GAWTC 2 cut(s) 10, 80
PkrI GCNGC 1 cut(s) 301
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
SatI GCNGC 1 cut(s) 300
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 1 cut(s) 268
SetI ASST 6 cut(s) 61, 95, 117, 234, 330, 388
Sse9I AATT 2 cut(s) 105, 166
StyD4I CCNGG 1 cut(s) 196
StyI CCWWGG 1 cut(s) 317
TaaI ACNGT 2 cut(s) 187, 351
TaqI TCGA 1 cut(s) 364
TasI AATT 2 cut(s) 105, 166
TfiI GAWTC 2 cut(s) 10, 80
TseFI GTSAC 2 cut(s) 251, 283
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 2 cut(s) 251, 283
XapI RAATTY 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.