Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001055

Physical Location & Seq

Genomic Coordinates Reverse (-)

4765711 .. 4767967

Gene Structure 2257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGTTGAGAAATATGGTGAAAGTAGTGAAAACCATTTTTTCAATGTTGAAGAAGGCAAACCTTCCTCCAAAACCAGTCAAGAACCAAGCGATGGCTTTCTCTCTGTACCCTTTATGCAGAAGGTTATTGCTGAGGTGTTGGGGACATATTTCTTGATCTTTGCTGGTTGTGGGTCTGTGATTGTGAATTTGAGCACAGACAAGCTGGTGTCATTTCCGGGAATTTCAATTACTTGGGGACTGACGGTGATGGTTATGGTTTACTCTGTTGGTCACATCTCTGGTGCCCATTTCAATCCTGCTGTTACTCTTGCTTTTGCTATTACTCATAGGTTCCCATGGAAAGAGGTACCCGCATATATTATTGCTCAAGTCCTTGGATCAACACTAGCAAGTGGTACCCTTAGGCTTTTATTCCAACACAGTCAAGACCATTTTGCAGGAACAGATCCCAGTGGATCTAATTTGCAGGCTTTCGTGCTTGAGTTCATCATCACATTTTACCTCATGTTTGTCGTGTCTGGTGTGGCCACTGATAGCAGAGCGGTTGGAGAGCTTGCTGGACTTGCAGTCGGCTCCACGGTTCTTCTGAATGTGATGTTTGCAGGGCCAATTACAGGAGCATCAATGAACCCAGCAAGAAGCTTAGGCCCTGCAATTGTCTGGAGCCATTACAAAGGCCTCTGGATTTACCTTGTGTCACCGATTCTTGGAGCATTATGTGGTGCCTTAGTCTACAACGTTATCAGATTTACGGATAAACCTCTCAATGAGCTCGCCAAGACTAGTTCTTTCTTGAAAGGCGTCGACCGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005215 GO:0005342 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009628 GO:0012505 GO:0012506 GO:0015075 GO:0015103 GO:0015105 GO:0015129 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015700 GO:0015711 GO:0015718 GO:0015727 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031347 GO:0031410 GO:0031982 GO:0034220 GO:0035873 GO:0036293 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046685 GO:0046942 GO:0046943 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0065007 GO:0070482 GO:0071702 GO:0071944 GO:0080134 GO:0080170 GO:0097708 GO:0098588 GO:0098656 GO:0098805 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

273

Amino Acids

29.28

Weight (kDa)

6.37

Isoelectric Point (pI)

26.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	35 - 246	8.5e-66	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31885 AT1G31885 AT1G31885 AT2G29870 AT2G34390 AT2G34390 AT2G34390 AT2G34390 AT4G18910 AT4G18910 AT4G19030 AT4G19030 AT4G19030
fragaria_vesca	FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07090 FvH4_6g07990 FvH4_6g08000 FvH4_6g08000 FvH4_6g08000
malus_domestica	MD00G1007200.v1.1 MD10G1273700.v1.1
prunus_persica	Prupe.4G068700_v2.0.a1
pyrus_communis	pycom05g27250 pycom10g22860
rosa_chinensis	RchiOBHm_Chr5g0012031 RchiOBHm_Chr5g0012041 RchiOBHm_Chr6g0279421
rosa_laevigata	RLG00000013147 RLG00000031880 RLG00000031881
rosa_multiflora	Rmu_sc0002519.1_g000006 Rmu_sc0020506.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064540 Rroxscaffold_1G00064560 Rroxscaffold_2G00109780 Rroxscaffold_7G00188910
rosa_rugosa	Rorug02G0319800 Rorug04G0460400 Rorug06G0124200
rosa_samantha	Rh5AG092600 Rh5BG088400 Rh5BG088600 Rh5CG102200 Rh5DG088900 Rh5DG089000 Rh6AG233100 Rh6BG237400 Rh6CG239600 Rh6DG231500
rosa_wichuraiana	Rw2G030270 Rw5G008080 Rw5G008090 Rw6G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	349, 398
AccB1I	GGYRCC	4 cut(s)	284, 349, 398, 725
AccB7I	CCANNNNNTGG	1 cut(s)	92
AccBSI	CCGCTC	1 cut(s)	545
AccI	GTMKAC	2 cut(s)	735, 807
AciI	CCGC	3 cut(s)	354, 545, 811
AclI	AACGTT	1 cut(s)	741
AclWI	GGATC	3 cut(s)	388, 443, 466
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	2 cut(s)	187, 222
AcyI	GRCGYC	1 cut(s)	804
AfaI	GTAC	3 cut(s)	108, 351, 400
AfiI	CCNNNNNNNGG	3 cut(s)	92, 617, 710
AgsI	TTSAA	5 cut(s)	43, 50, 228, 295, 799
AhdI	GACNNNNNGTC	1 cut(s)	569
AhlI	ACTAGT	1 cut(s)	785
AluBI	AGCT	4 cut(s)	205, 556, 645, 775
AluI	AGCT	4 cut(s)	205, 556, 645, 775
Alw21I	GWGCWC	2 cut(s)	197, 777
AlwI	GGATC	3 cut(s)	388, 443, 466
AoxI	GGCC	4 cut(s)	528, 608, 649, 679
ApoI	RAATTY	2 cut(s)	187, 222
Asp718I	GGTACC	2 cut(s)	349, 398
AspS9I	GGNCC	2 cut(s)	608, 650
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	3 cut(s)	29, 259, 693
AxyI	CCTNAGG	1 cut(s)	404
BaeGI	GKGCMC	1 cut(s)	289
BalI	TGGCCA	1 cut(s)	530
BanI	GGYRCC	4 cut(s)	284, 349, 398, 725
BanII	GRGCYC	1 cut(s)	777
Bbv12I	GWGCWC	2 cut(s)	197, 777
BbvCI	CCTCAGC	1 cut(s)	132
BccI	CCATC	2 cut(s)	86, 244
BcnI	CCSGG	1 cut(s)	219
BcuI	ACTAGT	1 cut(s)	785
BfaI	CTAG	2 cut(s)	389, 786
Bme1390I	CCNGG	1 cut(s)	219
BmeRI	GACNNNNNGTC	1 cut(s)	569
BmgT120I	GGNCC	2 cut(s)	608, 650
BmiI	GGNNCC	7 cut(s)	286, 335, 351, 400, 577, 668, 727
BmrFI	CCNGG	1 cut(s)	219
BmrI	ACTGGG	1 cut(s)	447
BmsI	GCATC	1 cut(s)	632
BmuI	ACTGGG	1 cut(s)	447
BpmI	CTGGAG	1 cut(s)	685
Bpu10I	CCTNAGC	2 cut(s)	132, 646
BpuEI	CTTGAG	2 cut(s)	354, 503
BpuMI	CCSGG	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	804
BsaJI	CCNNGG	3 cut(s)	338, 376, 579
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 617, 710
Bse1I	ACTGG	2 cut(s)	75, 453
Bse21I	CCTNAGG	1 cut(s)	404
BseDI	CCNNGG	3 cut(s)	338, 376, 579
BseLI	CCNNNNNNNGG	3 cut(s)	92, 617, 710
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	2 cut(s)	75, 453
BseSI	GKGCMC	1 cut(s)	289
BseYI	CCCAGC	1 cut(s)	634
Bsh1285I	CGRYCG	1 cut(s)	811
BshFI	GGCC	4 cut(s)	530, 610, 651, 681
BshNI	GGYRCC	4 cut(s)	284, 349, 398, 725
BsiEI	CGRYCG	1 cut(s)	811
BsiHKAI	GWGCWC	2 cut(s)	197, 777
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	2 cut(s)	157, 252
BslI	CCNNNNNNNGG	3 cut(s)	92, 617, 710
BsmFI	GGGAC	2 cut(s)	157, 252
BsnI	GGCC	4 cut(s)	530, 610, 651, 681
Bsp1286I	GDGCHC	3 cut(s)	197, 289, 777
Bsp143I	GATC	4 cut(s)	156, 380, 448, 458
Bsp19I	CCATGG	1 cut(s)	338
BspACI	CCGC	3 cut(s)	354, 545, 811
BspANI	GGCC	4 cut(s)	530, 610, 651, 681
BspCNI	CTCAG	1 cut(s)	124
BspLI	GGNNCC	7 cut(s)	286, 335, 351, 400, 577, 668, 727
BspPI	GGATC	3 cut(s)	388, 443, 466
BspT107I	GGYRCC	4 cut(s)	284, 349, 398, 725
BsrBI	CCGCTC	1 cut(s)	545
BsrI	ACTGG	2 cut(s)	75, 453
BssECI	CCNNGG	3 cut(s)	338, 376, 579
BssMI	GATC	4 cut(s)	156, 380, 448, 458
BssNI	GRCGYC	1 cut(s)	804
BssT1I	CCWWGG	2 cut(s)	338, 376
Bst4CI	ACNGT	3 cut(s)	247, 425, 583
BstACI	GRCGYC	1 cut(s)	804
BstC8I	GCNNGC	3 cut(s)	471, 558, 777
BstDEI	CTNAG	4 cut(s)	132, 404, 646, 730
BstDSI	CCRYGG	2 cut(s)	338, 579
BstKTI	GATC	4 cut(s)	159, 383, 451, 461
BstMBI	GATC	4 cut(s)	156, 380, 448, 458
BstMCI	CGRYCG	1 cut(s)	811
BstMWI	GCNNNNNNNGC	2 cut(s)	566, 810
BstSCI	CCNGG	1 cut(s)	217
BstSLI	GKGCMC	1 cut(s)	289
BstX2I	RGATCY	2 cut(s)	448, 458
BstYI	RGATCY	2 cut(s)	448, 458
Bsu36I	CCTNAGG	1 cut(s)	404
BsuRI	GGCC	4 cut(s)	530, 610, 651, 681
BtgI	CCRYGG	2 cut(s)	338, 579
BtgZI	GCGATG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	460, 531
Cac8I	GCNNGC	3 cut(s)	471, 558, 777
Cfr13I	GGNCC	2 cut(s)	608, 650
CseI	GACGC	1 cut(s)	793
Csp6I	GTAC	3 cut(s)	107, 350, 399
CviAII	CATG	2 cut(s)	339, 508
CviQI	GTAC	3 cut(s)	107, 350, 399
DdeI	CTNAG	4 cut(s)	132, 404, 646, 730
DpnI	GATC	4 cut(s)	158, 382, 450, 460
DpnII	GATC	4 cut(s)	156, 380, 448, 458
DriI	GACNNNNNGTC	1 cut(s)	569
EaeI	YGGCCR	1 cut(s)	528
Eam1105I	GACNNNNNGTC	1 cut(s)	569
Ecl136II	GAGCTC	1 cut(s)	775
Eco130I	CCWWGG	2 cut(s)	338, 376
Eco147I	AGGCCT	1 cut(s)	681
Eco24I	GRGCYC	1 cut(s)	777
Eco53kI	GAGCTC	1 cut(s)	775
Eco81I	CCTNAGG	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	775
EcoO109I	RGGNCCY	1 cut(s)	650
EcoT14I	CCWWGG	2 cut(s)	338, 376
EcoT38I	GRGCYC	1 cut(s)	777
ErhI	CCWWGG	2 cut(s)	338, 376
FaeI	CATG	2 cut(s)	342, 511
FaqI	GGGAC	2 cut(s)	157, 252
FatI	CATG	2 cut(s)	338, 507
FauI	CCCGC	1 cut(s)	361
FblI	GTMKAC	2 cut(s)	735, 807
FriOI	GRGCYC	1 cut(s)	777
FspBI	CTAG	2 cut(s)	389, 786
GsaI	CCCAGC	1 cut(s)	638
GsuI	CTGGAG	1 cut(s)	685
HaeIII	GGCC	4 cut(s)	530, 610, 651, 681
HapII	CCGG	1 cut(s)	218
HgaI	GACGC	1 cut(s)	793
Hin1I	GRCGYC	1 cut(s)	804
Hin1II	CATG	2 cut(s)	342, 511
HincII	GTYRAC	1 cut(s)	808
HindII	GTYRAC	1 cut(s)	808
HindIII	AAGCTT	1 cut(s)	643
HinfI	GANTC	1 cut(s)	706
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	3 cut(s)	29, 259, 693
Hpy166II	GTNNAC	3 cut(s)	262, 736, 808
Hpy188I	TCNGA	2 cut(s)	591, 749
Hpy188III	TCNNGA	6 cut(s)	80, 154, 428, 664, 685, 796
Hpy8I	GTNNAC	3 cut(s)	262, 736, 808
Hpy99I	CGWCG	1 cut(s)	809
HpyAV	CCTTC	3 cut(s)	47, 72, 115
HpyCH4III	ACNGT	3 cut(s)	247, 425, 583
HpyCH4IV	ACGT	1 cut(s)	741
HpyCH4V	TGCA	6 cut(s)	118, 440, 469, 569, 605, 656
HpyF10VI	GCNNNNNNNGC	2 cut(s)	566, 810
HpyF3I	CTNAG	4 cut(s)	132, 404, 646, 730
HpySE526I	ACGT	1 cut(s)	741
Hsp92I	GRCGYC	1 cut(s)	804
Hsp92II	CATG	2 cut(s)	342, 511
KpnI	GGTACC	2 cut(s)	353, 402
Kzo9I	GATC	4 cut(s)	156, 380, 448, 458
LmnI	GCTCC	4 cut(s)	581, 620, 666, 713
LweI	GCATC	1 cut(s)	632
MaeI	CTAG	2 cut(s)	389, 786
MaeII	ACGT	1 cut(s)	741
MaeIII	GTNAC	3 cut(s)	272, 304, 699
MalI	GATC	4 cut(s)	158, 382, 450, 460
MbiI	CCGCTC	1 cut(s)	545
MboI	GATC	4 cut(s)	156, 380, 448, 458
MboII	GAAGA	2 cut(s)	62, 578
MfeI	CAATTG	1 cut(s)	657
MflI	RGATCY	2 cut(s)	448, 458
MhlI	GDGCHC	3 cut(s)	197, 289, 777
MlsI	TGGCCA	1 cut(s)	530
MluCI	AATT	6 cut(s)	187, 222, 228, 463, 612, 657
MluNI	TGGCCA	1 cut(s)	530
MmeI	TCCRAC	2 cut(s)	442, 529
MnlI	CCTC	6 cut(s)	76, 127, 340, 515, 692, 774
Mox20I	TGGCCA	1 cut(s)	530
MscI	TGGCCA	1 cut(s)	530
Msp20I	TGGCCA	1 cut(s)	530
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	219
MunI	CAATTG	1 cut(s)	657
MwoI	GCNNNNNNNGC	2 cut(s)	566, 810
NciI	CCSGG	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	338
NdeII	GATC	4 cut(s)	156, 380, 448, 458
NlaIII	CATG	2 cut(s)	342, 511
NlaIV	GGNNCC	7 cut(s)	286, 335, 351, 400, 577, 668, 727
NmuCI	GTSAC	2 cut(s)	272, 699
PceI	AGGCCT	1 cut(s)	681
PfeI	GAWTC	1 cut(s)	706
PflMI	CCANNNNNTGG	1 cut(s)	92
PfoI	TCCNGGA	1 cut(s)	217
Psp124BI	GAGCTC	1 cut(s)	777
Psp1406I	AACGTT	1 cut(s)	741
PspFI	CCCAGC	1 cut(s)	634
PspN4I	GGNNCC	7 cut(s)	286, 335, 351, 400, 577, 668, 727
PspPI	GGNCC	2 cut(s)	608, 650
PsuI	RGATCY	2 cut(s)	448, 458
RsaI	GTAC	3 cut(s)	108, 351, 400
RsaNI	GTAC	3 cut(s)	107, 350, 399
SacI	GAGCTC	1 cut(s)	777
SalI	GTCGAC	1 cut(s)	806
Sau3AI	GATC	4 cut(s)	156, 380, 448, 458
Sau96I	GGNCC	2 cut(s)	608, 650
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	3 cut(s)	197, 289, 777
SfaNI	GCATC	1 cut(s)	632
SmlI	CTYRAG	2 cut(s)	369, 482
SmoI	CTYRAG	2 cut(s)	369, 482
SpeI	ACTAGT	1 cut(s)	785
Sse9I	AATT	6 cut(s)	187, 222, 228, 463, 612, 657
SseBI	AGGCCT	1 cut(s)	681
SsiI	CCGC	3 cut(s)	354, 545, 811
SspMI	CTAG	2 cut(s)	389, 786
SstI	GAGCTC	1 cut(s)	777
StuI	AGGCCT	1 cut(s)	681
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	2 cut(s)	338, 376
TaaI	ACNGT	3 cut(s)	247, 425, 583
TaiI	ACGT	1 cut(s)	744
TaqI	TCGA	1 cut(s)	807
TasI	AATT	6 cut(s)	187, 222, 228, 463, 612, 657
TfiI	GAWTC	1 cut(s)	706
TscAI	CASTG	2 cut(s)	460, 538
TseFI	GTSAC	2 cut(s)	272, 699
Tsp45I	GTSAC	2 cut(s)	272, 699
TspDTI	ATGAA	2 cut(s)	478, 644
TspGWI	ACGGA	1 cut(s)	770
TspRI	CASTG	2 cut(s)	460, 538
Van91I	CCANNNNNTGG	1 cut(s)	92
XapI	RAATTY	2 cut(s)	187, 222
XmiI	GTMKAC	2 cut(s)	735, 807
XspI	CTAG	2 cut(s)	389, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.