Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020506.1

Orthogroup ID

OG0001055

Physical Location & Seq

Genomic Coordinates Forward (+)

2411 .. 2884

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020506.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

atggcagagaatcttgcaaccaatggaagccatgtgattgctgaggtgttggggacatactttatgatattgacgggttgtgggtctgtggtggtgaatttgaacacagaaaatgcggtgtcgtttccagggattgcaataacttggggactggttgtgatggtcttgatttactctgttggtcacatctctggtgctcatttcaatcctgctgtcactattgcttttgctaccaccaagagatttccatggaaacaggtgagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005215 GO:0005342 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009628 GO:0012505 GO:0012506 GO:0015075 GO:0015103 GO:0015105 GO:0015129 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015700 GO:0015711 GO:0015718 GO:0015727 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031347 GO:0031410 GO:0031982 GO:0034220 GO:0035873 GO:0036293 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046685 GO:0046942 GO:0046943 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0065007 GO:0070482 GO:0071702 GO:0071944 GO:0080134 GO:0080170 GO:0097708 GO:0098588 GO:0098656 GO:0098805 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

88

Amino Acids

9.35

Weight (kDa)

6.81

Isoelectric Point (pI)

16.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31885 AT1G31885 AT1G31885 AT2G29870 AT2G34390 AT2G34390 AT2G34390 AT2G34390 AT4G18910 AT4G18910 AT4G19030 AT4G19030 AT4G19030
fragaria_vesca	FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07090 FvH4_6g07990 FvH4_6g08000 FvH4_6g08000 FvH4_6g08000
malus_domestica	MD00G1007200.v1.1 MD10G1273700.v1.1
prunus_persica	Prupe.4G068700_v2.0.a1
pyrus_communis	pycom05g27250 pycom10g22860
rosa_chinensis	RchiOBHm_Chr5g0012031 RchiOBHm_Chr5g0012041 RchiOBHm_Chr6g0279421
rosa_laevigata	RLG00000013147 RLG00000031880 RLG00000031881
rosa_multiflora	Rmu_sc0002519.1_g000006 Rmu_sc0020506.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064540 Rroxscaffold_1G00064560 Rroxscaffold_2G00109780 Rroxscaffold_7G00188910
rosa_rugosa	Rorug02G0319800 Rorug04G0460400 Rorug06G0124200
rosa_samantha	Rh5AG092600 Rh5BG088400 Rh5BG088600 Rh5CG102200 Rh5DG088900 Rh5DG089000 Rh6AG233100 Rh6BG237400 Rh6CG239600 Rh6DG231500
rosa_wichuraiana	Rw2G030270 Rw5G008080 Rw5G008090 Rw6G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	97
AgsI	TTSAA	2 cut(s)	103, 205
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	1 cut(s)	264
AluI	AGCT	1 cut(s)	264
Alw21I	GWGCWC	1 cut(s)	199
ApoI	RAATTY	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	199
BbvCI	CCTCAGC	1 cut(s)	42
BccI	CCATC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	129
Bpu10I	CCTNAGC	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	128, 248
Bse1I	ACTGG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	128, 248
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	199
BslFI	GGGAC	2 cut(s)	67, 162
BsmFI	GGGAC	2 cut(s)	67, 162
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp19I	CCATGG	1 cut(s)	248
BspACI	CCGC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	2 cut(s)	128, 248
BssT1I	CCWWGG	1 cut(s)	248
Bst2UI	CCWGG	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	42
BstDSI	CCRYGG	1 cut(s)	248
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	248
CviAII	CATG	2 cut(s)	32, 249
CviJI	RGCY	2 cut(s)	30, 264
CviKI_1	RGCY	2 cut(s)	30, 264
DdeI	CTNAG	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	248
FaeI	CATG	2 cut(s)	35, 252
FaiI	YATR	4 cut(s)	33, 58, 65, 250
FaqI	GGGAC	2 cut(s)	67, 162
FatI	CATG	2 cut(s)	31, 248
Hin1II	CATG	2 cut(s)	35, 252
HinfI	GANTC	1 cut(s)	10
HphI	GGTGA	1 cut(s)	106
Hpy188III	TCNNGA	1 cut(s)	166
HpyCH4V	TGCA	2 cut(s)	17, 137
HpyF3I	CTNAG	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	35, 252
LpnPI	CCDG	6 cut(s)	114, 137, 141, 177, 222, 242
MaeIII	GTNAC	2 cut(s)	182, 214
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	1 cut(s)	97
MnlI	CCTC	1 cut(s)	37
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
NcoI	CCATGG	1 cut(s)	248
NlaIII	CATG	2 cut(s)	35, 252
NmuCI	GTSAC	2 cut(s)	182, 214
PfeI	GAWTC	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	3 cut(s)	48, 261, 266
Sse9I	AATT	1 cut(s)	97
SsiI	CCGC	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	248
TasI	AATT	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	10
TseFI	GTSAC	2 cut(s)	182, 214
Tsp45I	GTSAC	2 cut(s)	182, 214
XapI	RAATTY	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.