Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001055

Physical Location & Seq

Genomic Coordinates Forward (+)

28675098 .. 28677587

Gene Structure 2490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00188910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCTGAGAATCTTGCAACCGATGGAAGCCATGTTCTCAATGTTGAAAATGACAAACCTTGCTCCAATACCAACCAAGAATCAAGCAGTAGCTTTTTCTGTGTACCCAGCTTTATGCAGAAGGTGATTGCTGAGGTGTTGGGGACATTCTTTTTGATATTTACGGGTTGTGGGTCTGTGGTGGTGAATTTGAACACAGAAAATACAGTGTCGTTTCCGGGGATTGCAATAGTTTGGGGACTGGTTGTGATGGTCTTGATTTACTCTGTTGGTCACATCTCTGGTGCTCATTTCAATCCTGCTGTCACTATTGCTTTTGCTACCACCAAGAGATTTCCATGGAAACAGGTACCCCCTTATATTGCTGCTCAAGTCCTTGGATCAACATTTGCAAGTGGTACACTTAGACTACTGTTTAACAAGCATCAAGACCACTTTGTAGGAACAAGTCCTAGTGGAACTCCCTTGCAGTCTTTCGTGATCGAGTTCATTATCACATTTTACCTCATGTTTGTTGTTTCTGGTGTTGCTACTGATAACAGAGCGATCGGAGAGCTTGCTGGGCTTGCAATTGGCTCCACTGTTCTTCTGAATGTGTTGTTTGCAGGACCAATTTCAGGAGCATCAATGAACCCAGCAAGAAGCTTAGGACCTGCAATAGTATCAAACCATTACAAAAACCTGTGGATTTACATTGCGTCACCAATTCTTGGAGCTGTATGTGGTGCCTTGGTCTACAATGTAATCAGATTTACAGATAAGCCACTGCGTGAGCTCACCAAGAGTGGCTCTTTCTTGAAAAGCACATGCCGTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005215 GO:0005342 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009628 GO:0012505 GO:0012506 GO:0015075 GO:0015103 GO:0015105 GO:0015129 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015700 GO:0015711 GO:0015718 GO:0015727 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031347 GO:0031410 GO:0031982 GO:0034220 GO:0035873 GO:0036293 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046685 GO:0046942 GO:0046943 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0065007 GO:0070482 GO:0071702 GO:0071944 GO:0080134 GO:0080170 GO:0097708 GO:0098588 GO:0098656 GO:0098805 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

272

Amino Acids

29.16

Weight (kDa)

8.61

Isoelectric Point (pI)

31.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	37 - 246	3.4e-66	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31885 AT1G31885 AT1G31885 AT2G29870 AT2G34390 AT2G34390 AT2G34390 AT2G34390 AT4G18910 AT4G18910 AT4G19030 AT4G19030 AT4G19030
fragaria_vesca	FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07090 FvH4_6g07990 FvH4_6g08000 FvH4_6g08000 FvH4_6g08000
malus_domestica	MD00G1007200.v1.1 MD10G1273700.v1.1
prunus_persica	Prupe.4G068700_v2.0.a1
pyrus_communis	pycom05g27250 pycom10g22860
rosa_chinensis	RchiOBHm_Chr5g0012031 RchiOBHm_Chr5g0012041 RchiOBHm_Chr6g0279421
rosa_laevigata	RLG00000013147 RLG00000031880 RLG00000031881
rosa_multiflora	Rmu_sc0002519.1_g000006 Rmu_sc0020506.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064540 Rroxscaffold_1G00064560 Rroxscaffold_2G00109780 Rroxscaffold_7G00188910
rosa_rugosa	Rorug02G0319800 Rorug04G0460400 Rorug06G0124200
rosa_samantha	Rh5AG092600 Rh5BG088400 Rh5BG088600 Rh5CG102200 Rh5DG088900 Rh5DG089000 Rh6AG233100 Rh6BG237400 Rh6CG239600 Rh6DG231500
rosa_wichuraiana	Rw2G030270 Rw5G008080 Rw5G008090 Rw6G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	661
Acc65I	GGTACC	1 cut(s)	349
AccB1I	GGYRCC	2 cut(s)	349, 725
AccB7I	CCANNNNNTGG	1 cut(s)	710
AccI	GTMKAC	1 cut(s)	735
AclWI	GGATC	1 cut(s)	388
AcsI	RAATTY	1 cut(s)	187
AdeI	CACNNNGTG	1 cut(s)	770
AfaI	GTAC	4 cut(s)	105, 351, 400, 814
AfiI	CCNNNNNNNGG	2 cut(s)	617, 710
AgsI	TTSAA	4 cut(s)	47, 193, 295, 799
AloI	GAACNNNNNNTCC	2 cut(s)	18, 50
AluBI	AGCT	6 cut(s)	93, 111, 556, 645, 716, 775
AluI	AGCT	6 cut(s)	93, 111, 556, 645, 716, 775
Alw21I	GWGCWC	2 cut(s)	289, 777
AlwI	GGATC	1 cut(s)	388
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	1 cut(s)	187
ArsI	GACNNNNNNTTYG	2 cut(s)	136, 168
Asp718I	GGTACC	1 cut(s)	349
AspS9I	GGNCC	2 cut(s)	608, 650
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	4 cut(s)	136, 196, 693, 769
AvaII	GGWCC	2 cut(s)	608, 650
BanI	GGYRCC	2 cut(s)	349, 725
BanII	GRGCYC	1 cut(s)	777
Bbv12I	GWGCWC	2 cut(s)	289, 777
BbvCI	CCTCAGC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	2 cut(s)	17, 244
BceAI	ACGGC	1 cut(s)	795
BcnI	CCSGG	1 cut(s)	219
BfaI	CTAG	1 cut(s)	453
BfuAI	ACCTGC	1 cut(s)	661
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
Bme1390I	CCNGG	1 cut(s)	219
Bme18I	GGWCC	2 cut(s)	608, 650
BmgT120I	GGNCC	2 cut(s)	608, 650
BmiI	GGNNCC	3 cut(s)	351, 577, 727
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	2 cut(s)	433, 632
Bpu10I	CCTNAGC	2 cut(s)	132, 646
BpuEI	CTTGAG	1 cut(s)	354
BpuMI	CCSGG	1 cut(s)	219
BsaJI	CCNNGG	4 cut(s)	218, 338, 376, 729
Bsc4I	CCNNNNNNNGG	2 cut(s)	617, 710
Bse1I	ACTGG	1 cut(s)	246
Bse3DI	GCAATG	1 cut(s)	693
BseDI	CCNNGG	4 cut(s)	218, 338, 376, 729
BseLI	CCNNNNNNNGG	2 cut(s)	617, 710
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	352
BseYI	CCCAGC	3 cut(s)	107, 560, 634
Bsh1285I	CGRYCG	1 cut(s)	549
BshNI	GGYRCC	2 cut(s)	349, 725
BsiEI	CGRYCG	1 cut(s)	549
BsiHKAI	GWGCWC	2 cut(s)	289, 777
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	2 cut(s)	157, 252
BslI	CCNNNNNNNGG	2 cut(s)	617, 710
BsmFI	GGGAC	2 cut(s)	157, 252
Bsp1286I	GDGCHC	2 cut(s)	289, 777
Bsp143I	GATC	3 cut(s)	380, 480, 546
Bsp19I	CCATGG	1 cut(s)	338
BspCNI	CTCAG	1 cut(s)	124
BspLI	GGNNCC	3 cut(s)	351, 577, 727
BspMI	ACCTGC	1 cut(s)	661
BspPI	GGATC	1 cut(s)	388
BspT107I	GGYRCC	2 cut(s)	349, 725
BsrDI	GCAATG	1 cut(s)	693
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	4 cut(s)	218, 338, 376, 729
BssMI	GATC	3 cut(s)	380, 480, 546
BssT1I	CCWWGG	3 cut(s)	338, 376, 729
Bst4CI	ACNGT	3 cut(s)	208, 414, 583
BstC8I	GCNNGC	2 cut(s)	558, 567
BstDEI	CTNAG	4 cut(s)	6, 132, 404, 646
BstDSI	CCRYGG	1 cut(s)	338
BstKTI	GATC	3 cut(s)	383, 483, 549
BstMBI	GATC	3 cut(s)	380, 480, 546
BstMCI	CGRYCG	1 cut(s)	549
BstMWI	GCNNNNNNNGC	2 cut(s)	562, 566
BstNSI	RCATGY	1 cut(s)	810
BstSCI	CCNGG	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	352
BtgI	CCRYGG	1 cut(s)	338
BtsI	GCAGTG	1 cut(s)	764
BtsIMutI	CAGTG	3 cut(s)	213, 579, 764
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	2 cut(s)	558, 567
Cfr13I	GGNCC	2 cut(s)	608, 650
CseI	GACGC	1 cut(s)	687
Csp6I	GTAC	4 cut(s)	104, 350, 399, 813
CviAII	CATG	4 cut(s)	32, 339, 508, 807
CviQI	GTAC	4 cut(s)	104, 350, 399, 813
DdeI	CTNAG	4 cut(s)	6, 132, 404, 646
DpnI	GATC	3 cut(s)	382, 482, 548
DpnII	GATC	3 cut(s)	380, 480, 546
DraIII	CACNNNGTG	1 cut(s)	770
Ecl136II	GAGCTC	1 cut(s)	775
Eco130I	CCWWGG	3 cut(s)	338, 376, 729
Eco24I	GRGCYC	1 cut(s)	777
Eco47I	GGWCC	2 cut(s)	608, 650
Eco53kI	GAGCTC	1 cut(s)	775
EcoICRI	GAGCTC	1 cut(s)	775
EcoO109I	RGGNCCY	1 cut(s)	650
EcoT14I	CCWWGG	3 cut(s)	338, 376, 729
EcoT38I	GRGCYC	1 cut(s)	777
ErhI	CCWWGG	3 cut(s)	338, 376, 729
FaeI	CATG	4 cut(s)	35, 342, 511, 810
FaiI	YATR	7 cut(s)	33, 116, 340, 360, 509, 721, 808
FaqI	GGGAC	2 cut(s)	157, 252
FatI	CATG	4 cut(s)	31, 338, 507, 806
FblI	GTMKAC	1 cut(s)	735
Fnu4HI	GCNGC	1 cut(s)	366
FriOI	GRGCYC	1 cut(s)	777
Fsp4HI	GCNGC	1 cut(s)	366
FspBI	CTAG	1 cut(s)	453
GluI	GCNGC	1 cut(s)	366
GsaI	CCCAGC	3 cut(s)	111, 564, 638
HapII	CCGG	1 cut(s)	218
HgaI	GACGC	1 cut(s)	687
Hin1II	CATG	4 cut(s)	35, 342, 511, 810
HindIII	AAGCTT	1 cut(s)	643
HinfI	GANTC	2 cut(s)	10, 80
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	4 cut(s)	136, 196, 693, 769
Hpy166II	GTNNAC	3 cut(s)	104, 401, 736
Hpy188I	TCNGA	3 cut(s)	551, 591, 749
Hpy188III	TCNNGA	5 cut(s)	256, 428, 478, 618, 796
Hpy8I	GTNNAC	3 cut(s)	104, 401, 736
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	3 cut(s)	208, 414, 583
HpyCH4V	TGCA	8 cut(s)	17, 118, 227, 392, 469, 569, 605, 656
HpyF10VI	GCNNNNNNNGC	2 cut(s)	562, 566
HpyF3I	CTNAG	4 cut(s)	6, 132, 404, 646
Hsp92II	CATG	4 cut(s)	35, 342, 511, 810
KpnI	GGTACC	1 cut(s)	353
Kzo9I	GATC	3 cut(s)	380, 480, 546
LmnI	GCTCC	4 cut(s)	68, 581, 620, 713
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	2 cut(s)	433, 632
MaeI	CTAG	1 cut(s)	453
MaeIII	GTNAC	3 cut(s)	272, 304, 699
MalI	GATC	3 cut(s)	382, 482, 548
MboI	GATC	3 cut(s)	380, 480, 546
MboII	GAAGA	1 cut(s)	578
MfeI	CAATTG	1 cut(s)	570
MhlI	GDGCHC	2 cut(s)	289, 777
MluCI	AATT	4 cut(s)	187, 570, 612, 705
MnlI	CCTC	2 cut(s)	127, 515
MseI	TTAA	1 cut(s)	417
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	219
MunI	CAATTG	1 cut(s)	570
MwoI	GCNNNNNNNGC	2 cut(s)	562, 566
NciI	CCSGG	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	338
NdeII	GATC	3 cut(s)	380, 480, 546
NlaIII	CATG	4 cut(s)	35, 342, 511, 810
NlaIV	GGNNCC	3 cut(s)	351, 577, 727
NmuCI	GTSAC	3 cut(s)	272, 304, 699
NspI	RCATGY	1 cut(s)	810
PfeI	GAWTC	2 cut(s)	10, 80
PflMI	CCANNNNNTGG	1 cut(s)	710
PkrI	GCNGC	1 cut(s)	367
Ple19I	CGATCG	1 cut(s)	549
PpuMI	RGGWCCY	1 cut(s)	650
Psp124BI	GAGCTC	1 cut(s)	777
Psp5II	RGGWCCY	1 cut(s)	650
PspFI	CCCAGC	3 cut(s)	107, 560, 634
PspN4I	GGNNCC	3 cut(s)	351, 577, 727
PspPI	GGNCC	2 cut(s)	608, 650
PspPPI	RGGWCCY	1 cut(s)	650
PvuI	CGATCG	1 cut(s)	549
RsaI	GTAC	4 cut(s)	105, 351, 400, 814
RsaNI	GTAC	4 cut(s)	104, 350, 399, 813
SacI	GAGCTC	1 cut(s)	777
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	3 cut(s)	380, 480, 546
Sau96I	GGNCC	2 cut(s)	608, 650
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	2 cut(s)	289, 777
SfaNI	GCATC	2 cut(s)	433, 632
SinI	GGWCC	2 cut(s)	608, 650
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
Sse9I	AATT	4 cut(s)	187, 570, 612, 705
SspMI	CTAG	1 cut(s)	453
SstI	GAGCTC	1 cut(s)	777
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	3 cut(s)	338, 376, 729
TaaI	ACNGT	3 cut(s)	208, 414, 583
TaqI	TCGA	1 cut(s)	483
TasI	AATT	4 cut(s)	187, 570, 612, 705
TfiI	GAWTC	2 cut(s)	10, 80
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	3 cut(s)	213, 586, 771
TseFI	GTSAC	3 cut(s)	272, 304, 699
TseI	GCWGC	1 cut(s)	365
Tsp45I	GTSAC	3 cut(s)	272, 304, 699
TspDTI	ATGAA	2 cut(s)	478, 644
TspRI	CASTG	3 cut(s)	213, 586, 771
Van91I	CCANNNNNTGG	1 cut(s)	710
VpaK11BI	GGWCC	2 cut(s)	608, 650
XapI	RAATTY	1 cut(s)	187
XceI	RCATGY	1 cut(s)	810
XmiI	GTMKAC	1 cut(s)	735
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.