Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001055

Physical Location & Seq

Genomic Coordinates Forward (+)

7697435 .. 7700473

Gene Structure 3039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG088600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCCGAGAATCATGCAAGTAACGGAAACCATGTTCTCAATGTTGAAGATGGCAGACCTTCCTCCAAAACAAACCAAGAATCAAGCGGTAGCTTTCTCTGTGTACCCTTTATGCAGAAGGTCATTGCTGAGGTGTTGGGGACATATTTCTTGATATTTGCTGGTTGTGGGGCTGTGGTGGTGAATATTGACACTGACAAGACGGTGTCGTTTCCGGGGATTGCAATTGTTTGGGGACTGGTTGTGATGGTCATGATTTACTCTGTGGGTCACATCTCCGGTGCCCATTTCAACCCTGCTGTCACAATTGCTTTTGCTACTACTAGGAGGTTTCCATGGAAACAGGTACCCCCTTATATTATTGCTCAAGTCCTTGGATCAACGCTCGCAAGTGGTACCCTTAGGCTCATATTTAACCACCATCAAGACCACTTTGTTGGAACAAGTCCTAGTGGAACTCTGTTGCAGTCTTTCGTGATTGAGTTCATCATCACATTTTACCTCATGTTTGTTGTTTCTGGTGTGGCCACTGATAACAGAGCGGTTAGTACTATTCTACCTCTAAATCTCAACACCGGGTCTGATTTTTCAATTAAGAACAATCTAATATGTTTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005215 GO:0005342 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009628 GO:0012505 GO:0012506 GO:0015075 GO:0015103 GO:0015105 GO:0015129 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015700 GO:0015711 GO:0015718 GO:0015727 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031347 GO:0031410 GO:0031982 GO:0034220 GO:0035873 GO:0036293 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046685 GO:0046942 GO:0046943 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0065007 GO:0070482 GO:0071702 GO:0071944 GO:0080134 GO:0080170 GO:0097708 GO:0098588 GO:0098656 GO:0098805 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

206

Amino Acids

22.28

Weight (kDa)

6.63

Isoelectric Point (pI)

33.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	35 - 189	1e-42	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31885 AT1G31885 AT1G31885 AT2G29870 AT2G34390 AT2G34390 AT2G34390 AT2G34390 AT4G18910 AT4G18910 AT4G19030 AT4G19030 AT4G19030
fragaria_vesca	FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07090 FvH4_6g07990 FvH4_6g08000 FvH4_6g08000 FvH4_6g08000
malus_domestica	MD00G1007200.v1.1 MD10G1273700.v1.1
prunus_persica	Prupe.4G068700_v2.0.a1
pyrus_communis	pycom05g27250 pycom10g22860
rosa_chinensis	RchiOBHm_Chr5g0012031 RchiOBHm_Chr5g0012041 RchiOBHm_Chr6g0279421
rosa_laevigata	RLG00000013147 RLG00000031880 RLG00000031881
rosa_multiflora	Rmu_sc0002519.1_g000006 Rmu_sc0020506.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064540 Rroxscaffold_1G00064560 Rroxscaffold_2G00109780 Rroxscaffold_7G00188910
rosa_rugosa	Rorug02G0319800 Rorug04G0460400 Rorug06G0124200
rosa_samantha	Rh5AG092600 Rh5BG088400 Rh5BG088600 Rh5CG102200 Rh5DG088900 Rh5DG089000 Rh6AG233100 Rh6BG237400 Rh6CG239600 Rh6DG231500
rosa_wichuraiana	Rw2G030270 Rw5G008080 Rw5G008090 Rw6G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	346, 395
AccB1I	GGYRCC	3 cut(s)	281, 346, 395
AccBSI	CCGCTC	1 cut(s)	542
AciI	CCGC	2 cut(s)	87, 542
AclWI	GGATC	1 cut(s)	385
AcoI	YGGCCR	2 cut(s)	3, 525
AfaI	GTAC	4 cut(s)	105, 348, 397, 550
AgsI	TTSAA	3 cut(s)	47, 292, 591
AloI	GAACNNNNNNTCC	2 cut(s)	18, 50
AluBI	AGCT	1 cut(s)	93
AluI	AGCT	1 cut(s)	93
AlwI	GGATC	1 cut(s)	385
AoxI	GGCC	2 cut(s)	3, 525
Asp718I	GGTACC	2 cut(s)	346, 395
AsuC2I	CCSGG	2 cut(s)	216, 577
AsuHPI	GGTGA	1 cut(s)	193
AxyI	CCTNAGG	1 cut(s)	401
BaeGI	GKGCMC	1 cut(s)	286
BalI	TGGCCA	1 cut(s)	527
BanI	GGYRCC	3 cut(s)	281, 346, 395
BbvCI	CCTCAGC	1 cut(s)	129
BccI	CCATC	3 cut(s)	44, 241, 429
BcgI	CGANNNNNNTGC	1 cut(s)	30
BcnI	CCSGG	2 cut(s)	216, 577
BfaI	CTAG	2 cut(s)	324, 450
BmcAI	AGTACT	1 cut(s)	550
Bme1390I	CCNGG	2 cut(s)	216, 577
BmiI	GGNNCC	3 cut(s)	283, 348, 397
BmrFI	CCNGG	2 cut(s)	216, 577
Bpu10I	CCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	351
BpuMI	CCSGG	2 cut(s)	216, 577
BsaJI	CCNNGG	3 cut(s)	215, 335, 373
BsaWI	WCCGGW	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	243
Bse21I	CCTNAGG	1 cut(s)	401
Bse3DI	GCAATG	1 cut(s)	123
BseDI	CCNNGG	3 cut(s)	215, 335, 373
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	243
BseSI	GKGCMC	1 cut(s)	286
BshFI	GGCC	2 cut(s)	5, 527
BshNI	GGYRCC	3 cut(s)	281, 346, 395
BsiSI	CCGG	3 cut(s)	215, 279, 576
BslFI	GGGAC	2 cut(s)	154, 249
BsmFI	GGGAC	2 cut(s)	154, 249
BsnI	GGCC	2 cut(s)	5, 527
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	1 cut(s)	377
Bsp19I	CCATGG	1 cut(s)	335
BspACI	CCGC	2 cut(s)	87, 542
BspANI	GGCC	2 cut(s)	5, 527
BspCNI	CTCAG	1 cut(s)	121
BspHI	TCATGA	1 cut(s)	252
BspLI	GGNNCC	3 cut(s)	283, 348, 397
BspPI	GGATC	1 cut(s)	385
BspT107I	GGYRCC	3 cut(s)	281, 346, 395
BsrBI	CCGCTC	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	243
BssECI	CCNNGG	3 cut(s)	215, 335, 373
BssMI	GATC	1 cut(s)	377
BssT1I	CCWWGG	2 cut(s)	335, 373
Bst4CI	ACNGT	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	2 cut(s)	129, 401
BstDSI	CCRYGG	1 cut(s)	335
BstKTI	GATC	1 cut(s)	380
BstMBI	GATC	1 cut(s)	377
BstSCI	CCNGG	2 cut(s)	214, 575
BstSLI	GKGCMC	1 cut(s)	286
BstXI	CCANNNNNNTGG	1 cut(s)	437
Bsu36I	CCTNAGG	1 cut(s)	401
BsuRI	GGCC	2 cut(s)	5, 527
BtgI	CCRYGG	1 cut(s)	335
BtsIMutI	CAGTG	2 cut(s)	192, 528
Cac8I	GCNNGC	1 cut(s)	387
CciI	TCATGA	1 cut(s)	252
Csp6I	GTAC	4 cut(s)	104, 347, 396, 549
CviAII	CATG	5 cut(s)	14, 32, 253, 336, 505
CviJI	RGCY	5 cut(s)	5, 93, 173, 406, 527
CviKI_1	RGCY	5 cut(s)	5, 93, 173, 406, 527
CviQI	GTAC	4 cut(s)	104, 347, 396, 549
DdeI	CTNAG	2 cut(s)	129, 401
DpnI	GATC	1 cut(s)	379
DpnII	GATC	1 cut(s)	377
EaeI	YGGCCR	2 cut(s)	3, 525
Eco130I	CCWWGG	2 cut(s)	335, 373
Eco81I	CCTNAGG	1 cut(s)	401
EcoT14I	CCWWGG	2 cut(s)	335, 373
ErhI	CCWWGG	2 cut(s)	335, 373
FaeI	CATG	5 cut(s)	17, 35, 256, 339, 508
FaqI	GGGAC	2 cut(s)	154, 249
FatI	CATG	5 cut(s)	13, 31, 252, 335, 504
FspBI	CTAG	2 cut(s)	324, 450
HaeIII	GGCC	2 cut(s)	5, 527
HapII	CCGG	3 cut(s)	215, 279, 576
Hin1II	CATG	5 cut(s)	17, 35, 256, 339, 508
HinfI	GANTC	2 cut(s)	10, 80
HpaII	CCGG	3 cut(s)	215, 279, 576
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	1 cut(s)	583
Hpy188III	TCNNGA	4 cut(s)	151, 253, 425, 475
Hpy8I	GTNNAC	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	69, 112
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	4 cut(s)	17, 115, 224, 466
HpyF3I	CTNAG	2 cut(s)	129, 401
Hsp92II	CATG	5 cut(s)	17, 35, 256, 339, 508
KpnI	GGTACC	2 cut(s)	350, 399
Kzo9I	GATC	1 cut(s)	377
LpnPI	CCDG	8 cut(s)	147, 224, 228, 292, 309, 329, 504, 589
MaeI	CTAG	2 cut(s)	324, 450
MaeIII	GTNAC	3 cut(s)	20, 269, 301
MalI	GATC	1 cut(s)	379
MbiI	CCGCTC	1 cut(s)	542
MboI	GATC	1 cut(s)	377
MboII	GAAGA	1 cut(s)	59
MfeI	CAATTG	2 cut(s)	225, 306
MhlI	GDGCHC	1 cut(s)	286
MlsI	TGGCCA	1 cut(s)	527
MluCI	AATT	3 cut(s)	225, 306, 591
MluNI	TGGCCA	1 cut(s)	527
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	5 cut(s)	73, 124, 321, 512, 570
Mox20I	TGGCCA	1 cut(s)	527
MscI	TGGCCA	1 cut(s)	527
MseI	TTAA	2 cut(s)	414, 594
Msp20I	TGGCCA	1 cut(s)	527
MspI	CCGG	3 cut(s)	215, 279, 576
MspR9I	CCNGG	2 cut(s)	216, 577
MunI	CAATTG	2 cut(s)	225, 306
NciI	CCSGG	2 cut(s)	216, 577
NcoI	CCATGG	1 cut(s)	335
NdeII	GATC	1 cut(s)	377
NlaIII	CATG	5 cut(s)	17, 35, 256, 339, 508
NlaIV	GGNNCC	3 cut(s)	283, 348, 397
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	2 cut(s)	269, 301
PagI	TCATGA	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	10, 80
PflFI	GACNNNGTC	1 cut(s)	205
PspN4I	GGNNCC	3 cut(s)	283, 348, 397
PsyI	GACNNNGTC	1 cut(s)	205
RsaI	GTAC	4 cut(s)	105, 348, 397, 550
RsaNI	GTAC	4 cut(s)	104, 347, 396, 549
SaqAI	TTAA	2 cut(s)	414, 594
Sau3AI	GATC	1 cut(s)	377
ScaI	AGTACT	1 cut(s)	550
ScrFI	CCNGG	2 cut(s)	216, 577
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	8 cut(s)	61, 95, 123, 135, 332, 348, 504, 562
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
Sse9I	AATT	3 cut(s)	225, 306, 591
SsiI	CCGC	2 cut(s)	87, 542
SspI	AATATT	1 cut(s)	187
SspMI	CTAG	2 cut(s)	324, 450
StyD4I	CCNGG	2 cut(s)	214, 575
StyI	CCWWGG	2 cut(s)	335, 373
TaaI	ACNGT	1 cut(s)	205
TasI	AATT	3 cut(s)	225, 306, 591
TatI	WGTACW	1 cut(s)	548
TfiI	GAWTC	2 cut(s)	10, 80
Tru1I	TTAA	2 cut(s)	414, 594
Tru9I	TTAA	2 cut(s)	414, 594
TscAI	CASTG	2 cut(s)	199, 535
TseFI	GTSAC	2 cut(s)	269, 301
Tsp45I	GTSAC	2 cut(s)	269, 301
TspDTI	ATGAA	1 cut(s)	475
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	2 cut(s)	199, 535
Tth111I	GACNNNGTC	1 cut(s)	205
XspI	CTAG	2 cut(s)	324, 450
ZrmI	AGTACT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.