Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0001055

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG102200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGCTGTTTCACACCATAAGTGGGAGTTGTCCTCCTGAGTTTTTTTTCTCACTCCAGTCTTCAGGATTGAGAAAAACAAGCACAAGAAATTTTCTCCTTCTGAGTCGCTCTGTTCTCTCTCTTTCTATCTTTCTCTTCATCAGCTGTTTTTTGTGTTCTGAAGCCATGGCTGAGAATCATGCAAGTGATGGAAACCATGTTCTCAATGTAGAAGATGACAAACCTTCCTCCAAAACCAACCAAGAATCAAGCAGTAGCTTGCTCGGTGTACTTTTTTTGCAGAAGGTGATTGCTGAGGTGTTGGGGACATACTTCTTGATATTTGCTGGTTGTGGGGCTGTGGTAGTGAATTTCGACACAGATAAGATGGTGTCATCTCCGGCAGTTGCAATTGTTTGGGGACTGGTTGTCATGGTGATGATTTACTCTGTTGGTCACATCTCCGGTGCCCACTTCAATCCTGCTGTCACAATTGCTTTTGCTACTACTAAGAGGTTTCCATGGAAACAGGTACTCCCTTATATTGCTGCTCAAGTCCTTGGATCAACGCTCGCAAGTGGTACCCTTAGGCTCATATTTAACCAGCATCAAGACCACTTTGTTGGAACAAGTCCTAGTGGAACTCTGTTGCAGTCTTTCGTGATTGAGTTCATCATCACATTTTACCTCATGTTTGTAGTTTCTGGTGTGGCCACTGATAACAGAGCGATTGGAGAGCTGGCGGGGATTGCCATTGGCTCCACGGTTCTTCTGAACGTGATGTTTGCAGGTCCAATTACAGGAGCATCAATGAACCCAGCAAGAAGCTTAGGGCCTGTAATTGTCTCAGGCCATTACAAAAACCTGTGGATTTACTTAGTGGCACCAACTCTTGGAGCTGTATGTGGTGCCCTGGTCTACAATGTTATCCGATTTACGGATAAGCCACTGCGAGAGCTCACCAAGACTGGATCTTTCTTGAAAGGCTCAGGCCGCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005215 GO:0005342 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009628 GO:0012505 GO:0012506 GO:0015075 GO:0015103 GO:0015105 GO:0015129 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015700 GO:0015711 GO:0015718 GO:0015727 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031347 GO:0031410 GO:0031982 GO:0034220 GO:0035873 GO:0036293 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046685 GO:0046942 GO:0046943 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0065007 GO:0070482 GO:0071702 GO:0071944 GO:0080134 GO:0080170 GO:0097708 GO:0098588 GO:0098656 GO:0098805 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

326

Amino Acids

35.06

Weight (kDa)

8.8

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	90 - 300	7.1e-64	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31885 AT1G31885 AT1G31885 AT2G29870 AT2G34390 AT2G34390 AT2G34390 AT2G34390 AT4G18910 AT4G18910 AT4G19030 AT4G19030 AT4G19030
fragaria_vesca	FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07090 FvH4_6g07990 FvH4_6g08000 FvH4_6g08000 FvH4_6g08000
malus_domestica	MD00G1007200.v1.1 MD10G1273700.v1.1
prunus_persica	Prupe.4G068700_v2.0.a1
pyrus_communis	pycom05g27250 pycom10g22860
rosa_chinensis	RchiOBHm_Chr5g0012031 RchiOBHm_Chr5g0012041 RchiOBHm_Chr6g0279421
rosa_laevigata	RLG00000013147 RLG00000031880 RLG00000031881
rosa_multiflora	Rmu_sc0002519.1_g000006 Rmu_sc0020506.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064540 Rroxscaffold_1G00064560 Rroxscaffold_2G00109780 Rroxscaffold_7G00188910
rosa_rugosa	Rorug02G0319800 Rorug04G0460400 Rorug06G0124200
rosa_samantha	Rh5AG092600 Rh5BG088400 Rh5BG088600 Rh5CG102200 Rh5DG088900 Rh5DG089000 Rh6AG233100 Rh6BG237400 Rh6CG239600 Rh6DG231500
rosa_wichuraiana	Rw2G030270 Rw5G008080 Rw5G008090 Rw6G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	758
Acc65I	GGTACC	1 cut(s)	560
AccB1I	GGYRCC	4 cut(s)	446, 560, 862, 887
AccB7I	CCANNNNNTGG	1 cut(s)	872
AccI	GTMKAC	1 cut(s)	897
AciI	CCGC	2 cut(s)	722, 973
AclWI	GGATC	2 cut(s)	550, 958
AcoI	YGGCCR	1 cut(s)	690
AcsI	RAATTY	2 cut(s)	88, 349
AcuI	CTGAAG	2 cut(s)	45, 180
AfaI	GTAC	3 cut(s)	270, 513, 562
AfiI	CCNNNNNNNGG	4 cut(s)	21, 779, 872, 916
AgsI	TTSAA	2 cut(s)	457, 961
AhdI	GACNNNNNGTC	1 cut(s)	407
AjnI	CCWGG	1 cut(s)	891
AloI	GAACNNNNNNTCC	2 cut(s)	183, 215
AluBI	AGCT	6 cut(s)	144, 258, 718, 807, 878, 937
AluI	AGCT	6 cut(s)	144, 258, 718, 807, 878, 937
Alw21I	GWGCWC	1 cut(s)	939
Alw26I	GTCTC	1 cut(s)	829
AlwI	GGATC	2 cut(s)	550, 958
AoxI	GGCC	4 cut(s)	690, 812, 829, 970
ApeKI	GCWGC	1 cut(s)	527
ApoI	RAATTY	2 cut(s)	88, 349
Asp718I	GGTACC	1 cut(s)	560
AspS9I	GGNCC	2 cut(s)	770, 812
AsuHPI	GGTGA	3 cut(s)	298, 427, 931
AvaII	GGWCC	1 cut(s)	770
AxyI	CCTNAGG	1 cut(s)	566
BaeGI	GKGCMC	2 cut(s)	451, 892
BalI	TGGCCA	1 cut(s)	692
BanI	GGYRCC	4 cut(s)	446, 560, 862, 887
BanII	GRGCYC	1 cut(s)	939
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	939
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	2 cut(s)	182, 361
BciT130I	CCWGG	1 cut(s)	893
BcoDI	GTCTC	1 cut(s)	829
BfaI	CTAG	1 cut(s)	615
BfuAI	ACCTGC	1 cut(s)	758
BisI	GCNGC	2 cut(s)	528, 973
BlsI	GCNGC	2 cut(s)	529, 974
Bme1390I	CCNGG	1 cut(s)	893
Bme18I	GGWCC	1 cut(s)	770
BmeRI	GACNNNNNGTC	1 cut(s)	407
BmgT120I	GGNCC	2 cut(s)	770, 812
BmiI	GGNNCC	5 cut(s)	448, 562, 739, 864, 889
BmrFI	CCNGG	1 cut(s)	893
BmsI	GCATC	2 cut(s)	595, 794
BpiI	GAAGAC	1 cut(s)	51
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
BpmI	CTGGAG	1 cut(s)	38
Bpu10I	CCTNAGC	3 cut(s)	294, 808, 967
BpuEI	CTTGAG	1 cut(s)	516
BsaJI	CCNNGG	5 cut(s)	165, 500, 538, 741, 891
BsaWI	WCCGGW	1 cut(s)	443
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	4 cut(s)	21, 779, 872, 916
Bse1I	ACTGG	3 cut(s)	55, 408, 952
Bse21I	CCTNAGG	1 cut(s)	566
BseBI	CCWGG	1 cut(s)	893
BseDI	CCNNGG	5 cut(s)	165, 500, 538, 741, 891
BseLI	CCNNNNNNNGG	4 cut(s)	21, 779, 872, 916
BseMII	CTCAG	6 cut(s)	27, 92, 162, 285, 840, 981
BseNI	ACTGG	3 cut(s)	55, 408, 952
BseSI	GKGCMC	2 cut(s)	451, 892
BseXI	GCAGC	1 cut(s)	514
BseYI	CCCAGC	1 cut(s)	796
BshFI	GGCC	4 cut(s)	692, 814, 831, 972
BshNI	GGYRCC	4 cut(s)	446, 560, 862, 887
BsiHKAI	GWGCWC	1 cut(s)	939
BsiSI	CCGG	2 cut(s)	380, 444
BslFI	GGGAC	2 cut(s)	319, 414
BslI	CCNNNNNNNGG	4 cut(s)	21, 779, 872, 916
BsmAI	GTCTC	1 cut(s)	829
BsmFI	GGGAC	2 cut(s)	319, 414
BsnI	GGCC	4 cut(s)	692, 814, 831, 972
Bsp1286I	GDGCHC	3 cut(s)	451, 892, 939
Bsp143I	GATC	2 cut(s)	542, 950
Bsp19I	CCATGG	2 cut(s)	165, 500
BspACI	CCGC	2 cut(s)	722, 973
BspANI	GGCC	4 cut(s)	692, 814, 831, 972
BspCNI	CTCAG	6 cut(s)	28, 93, 163, 286, 839, 980
BspLI	GGNNCC	5 cut(s)	448, 562, 739, 864, 889
BspMI	ACCTGC	1 cut(s)	758
BspPI	GGATC	2 cut(s)	550, 958
BspT107I	GGYRCC	4 cut(s)	446, 560, 862, 887
BsrI	ACTGG	3 cut(s)	55, 408, 952
BssECI	CCNNGG	5 cut(s)	165, 500, 538, 741, 891
BssMI	GATC	2 cut(s)	542, 950
BssT1I	CCWWGG	3 cut(s)	165, 500, 538
Bst2UI	CCWGG	1 cut(s)	893
Bst4CI	ACNGT	1 cut(s)	745
Bst6I	CTCTTC	1 cut(s)	140
BstC8I	GCNNGC	3 cut(s)	260, 552, 720
BstDSI	CCRYGG	3 cut(s)	165, 500, 741
BstKTI	GATC	2 cut(s)	545, 953
BstMAI	GTCTC	1 cut(s)	829
BstMBI	GATC	2 cut(s)	542, 950
BstMWI	GCNNNNNNNGC	2 cut(s)	728, 972
BstNI	CCWGG	1 cut(s)	893
BstSCI	CCNGG	1 cut(s)	891
BstSLI	GKGCMC	2 cut(s)	451, 892
BstV1I	GCAGC	1 cut(s)	514
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	950
BstXI	CCANNNNNNTGG	1 cut(s)	602
BstYI	RGATCY	1 cut(s)	950
Bsu36I	CCTNAGG	1 cut(s)	566
BsuRI	GGCC	4 cut(s)	692, 814, 831, 972
BtgI	CCRYGG	3 cut(s)	165, 500, 741
BtsI	GCAGTG	1 cut(s)	926
BtsIMutI	CAGTG	2 cut(s)	693, 926
BveI	ACCTGC	1 cut(s)	758
Cac8I	GCNNGC	3 cut(s)	260, 552, 720
Cfr13I	GGNCC	2 cut(s)	770, 812
Csp6I	GTAC	3 cut(s)	269, 512, 561
CviAII	CATG	6 cut(s)	166, 179, 197, 412, 501, 670
CviQI	GTAC	3 cut(s)	269, 512, 561
DpnI	GATC	2 cut(s)	544, 952
DpnII	GATC	2 cut(s)	542, 950
DriI	GACNNNNNGTC	1 cut(s)	407
EaeI	YGGCCR	1 cut(s)	690
Eam1104I	CTCTTC	1 cut(s)	140
Eam1105I	GACNNNNNGTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	140
Ecl136II	GAGCTC	1 cut(s)	937
Eco130I	CCWWGG	3 cut(s)	165, 500, 538
Eco24I	GRGCYC	1 cut(s)	939
Eco47I	GGWCC	1 cut(s)	770
Eco53kI	GAGCTC	1 cut(s)	937
Eco57I	CTGAAG	2 cut(s)	45, 180
Eco81I	CCTNAGG	1 cut(s)	566
EcoICRI	GAGCTC	1 cut(s)	937
EcoO109I	RGGNCCY	1 cut(s)	812
EcoRII	CCWGG	1 cut(s)	891
EcoT14I	CCWWGG	3 cut(s)	165, 500, 538
EcoT38I	GRGCYC	1 cut(s)	939
ErhI	CCWWGG	3 cut(s)	165, 500, 538
FaeI	CATG	6 cut(s)	169, 182, 200, 415, 504, 673
FaqI	GGGAC	2 cut(s)	319, 414
FatI	CATG	6 cut(s)	165, 178, 196, 411, 500, 669
FauI	CCCGC	1 cut(s)	715
FblI	GTMKAC	1 cut(s)	897
Fnu4HI	GCNGC	2 cut(s)	528, 973
FriOI	GRGCYC	1 cut(s)	939
Fsp4HI	GCNGC	2 cut(s)	528, 973
FspBI	CTAG	1 cut(s)	615
GluI	GCNGC	2 cut(s)	528, 973
GsaI	CCCAGC	1 cut(s)	800
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	4 cut(s)	692, 814, 831, 972
HapII	CCGG	2 cut(s)	380, 444
Hin1II	CATG	6 cut(s)	169, 182, 200, 415, 504, 673
HindIII	AAGCTT	1 cut(s)	805
HinfI	GANTC	3 cut(s)	103, 175, 245
HpaII	CCGG	2 cut(s)	380, 444
HphI	GGTGA	3 cut(s)	298, 427, 931
Hpy166II	GTNNAC	2 cut(s)	269, 898
Hpy188I	TCNGA	4 cut(s)	102, 160, 753, 911
Hpy188III	TCNNGA	6 cut(s)	35, 63, 316, 590, 640, 958
Hpy8I	GTNNAC	2 cut(s)	269, 898
HpyAV	CCTTC	3 cut(s)	107, 234, 277
HpyCH4III	ACNGT	1 cut(s)	745
HpyCH4IV	ACGT	1 cut(s)	756
HpyCH4V	TGCA	5 cut(s)	182, 280, 389, 631, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	728, 972
HpySE526I	ACGT	1 cut(s)	756
Hsp92II	CATG	6 cut(s)	169, 182, 200, 415, 504, 673
KpnI	GGTACC	1 cut(s)	564
Kzo9I	GATC	2 cut(s)	542, 950
LmnI	GCTCC	3 cut(s)	743, 782, 875
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	2 cut(s)	595, 794
MaeI	CTAG	1 cut(s)	615
MaeII	ACGT	1 cut(s)	756
MaeIII	GTNAC	2 cut(s)	434, 466
MalI	GATC	2 cut(s)	544, 952
MboI	GATC	2 cut(s)	542, 950
MboII	GAAGA	4 cut(s)	51, 127, 224, 740
MfeI	CAATTG	2 cut(s)	390, 471
MflI	RGATCY	1 cut(s)	950
MhlI	GDGCHC	3 cut(s)	451, 892, 939
MlsI	TGGCCA	1 cut(s)	692
MluCI	AATT	6 cut(s)	88, 349, 390, 471, 774, 819
MluNI	TGGCCA	1 cut(s)	692
MlyI	GAGTC	1 cut(s)	112
MmeI	TCCRAC	1 cut(s)	583
MnlI	CCTC	5 cut(s)	42, 238, 289, 486, 677
Mox20I	TGGCCA	1 cut(s)	692
MscI	TGGCCA	1 cut(s)	692
MseI	TTAA	1 cut(s)	579
MslI	CAYNNNNRTG	2 cut(s)	183, 416
Msp20I	TGGCCA	1 cut(s)	692
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	2 cut(s)	380, 444
MspR9I	CCNGG	1 cut(s)	893
MunI	CAATTG	2 cut(s)	390, 471
MvaI	CCWGG	1 cut(s)	893
MwoI	GCNNNNNNNGC	2 cut(s)	728, 972
NcoI	CCATGG	2 cut(s)	165, 500
NdeII	GATC	2 cut(s)	542, 950
NlaIII	CATG	6 cut(s)	169, 182, 200, 415, 504, 673
NlaIV	GGNNCC	5 cut(s)	448, 562, 739, 864, 889
NmuCI	GTSAC	2 cut(s)	434, 466
PfeI	GAWTC	2 cut(s)	175, 245
PflMI	CCANNNNNTGG	1 cut(s)	872
PkrI	GCNGC	2 cut(s)	529, 974
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	939
Psp6I	CCWGG	1 cut(s)	891
PspFI	CCCAGC	1 cut(s)	796
PspGI	CCWGG	1 cut(s)	891
PspN4I	GGNNCC	5 cut(s)	448, 562, 739, 864, 889
PspPI	GGNCC	2 cut(s)	770, 812
PsuI	RGATCY	1 cut(s)	950
PvuII	CAGCTG	1 cut(s)	144
RsaI	GTAC	3 cut(s)	270, 513, 562
RsaNI	GTAC	3 cut(s)	269, 512, 561
RseI	CAYNNNNRTG	2 cut(s)	183, 416
SacI	GAGCTC	1 cut(s)	939
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	2 cut(s)	528, 973
Sau3AI	GATC	2 cut(s)	542, 950
Sau96I	GGNCC	2 cut(s)	770, 812
SchI	GAGTC	1 cut(s)	112
ScrFI	CCNGG	1 cut(s)	893
SduI	GDGCHC	3 cut(s)	451, 892, 939
SfaNI	GCATC	2 cut(s)	595, 794
SinI	GGWCC	1 cut(s)	770
SmiMI	CAYNNNNRTG	2 cut(s)	183, 416
SmlI	CTYRAG	1 cut(s)	531
SmoI	CTYRAG	1 cut(s)	531
Sse9I	AATT	6 cut(s)	88, 349, 390, 471, 774, 819
SsiI	CCGC	2 cut(s)	722, 973
SspMI	CTAG	1 cut(s)	615
SstI	GAGCTC	1 cut(s)	939
StyD4I	CCNGG	1 cut(s)	891
StyI	CCWWGG	3 cut(s)	165, 500, 538
TaaI	ACNGT	1 cut(s)	745
TaiI	ACGT	1 cut(s)	759
TaqI	TCGA	1 cut(s)	354
TasI	AATT	6 cut(s)	88, 349, 390, 471, 774, 819
TatI	WGTACW	1 cut(s)	268
TauI	GCSGC	1 cut(s)	975
TfiI	GAWTC	2 cut(s)	175, 245
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	2 cut(s)	700, 933
TseFI	GTSAC	2 cut(s)	434, 466
TseI	GCWGC	1 cut(s)	527
Tsp45I	GTSAC	2 cut(s)	434, 466
TspDTI	ATGAA	3 cut(s)	127, 640, 806
TspGWI	ACGGA	1 cut(s)	932
TspRI	CASTG	2 cut(s)	700, 933
Van91I	CCANNNNNTGG	1 cut(s)	872
VpaK11BI	GGWCC	1 cut(s)	770
XapI	RAATTY	2 cut(s)	88, 349
XmiI	GTMKAC	1 cut(s)	897
XspI	CTAG	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.