Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001055

Physical Location & Seq

Genomic Coordinates Reverse (-)

4214127 .. 4221957

Gene Structure 7831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g07071.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCAGAGAATCATGAAAGTAGTAGAAATCATGTTGTCAGTGTTGAAGATGACAAACCTTCCTCCAAAACCAACCAAGAATCAAGCAGGGCCGTTCTATCTGTTCCCTTTATGCAGAAGGTCATTGCTGAGGTGTTGGGCACATACTTCTTGATATTTGCTGGTTGTGGGGCTGTGATAGTGAATTTCAACACAGACAAGACGGTGTCGTCTCCGGCGGTTGCAATTGTATGGGGACTAGTTGTCATGGTGCTCAATTACTCAGTTGGTCACATCTCCGGTGCCCATTTCAATCCCGCTGTCACTATTGCTTTTGCTGCTACTAAGAGGTTTCCATGGAAGCAGGTACTCCCTTATATTGCTGCTCAAGTCTTTGGATCAATACTCGCAAGTGGTACCCTTAGGCTTATATTTAACCACCATGAAGACCATTTTGTTGGAACAAGTCCTAGTGGAACTCAACTGCAGTCTTTCGTGATTGAGTTCATCATCACATTTTACCTCATGTTTGTTGTTTCTGGTGTGGCCACTGATAACAGAGCGACTGGAGAGCTTGCTGGGCTTGCAGTTGGCTCCACAATTCTTCTGAATGTGATGTTTGCAGGGCCAGTTACAGGAGCATCAATGAACCCAGCAAGAAGCTTAGGCCCTGCAATTGTCTGGAGCCAATACAAAGGCCTATGGATTTACCTTGTGTCACCGATTCTTGGAGCATTATGTGGTGCCTTGGTCTACAATGTTATCAGATTTACTGATAAGCCTCTGCATGAGCTCACCAAGACTAGCTCTTTCTTGAAAGGCGTCGACCGCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005215 GO:0005342 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009628 GO:0012505 GO:0012506 GO:0015075 GO:0015103 GO:0015105 GO:0015129 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015700 GO:0015711 GO:0015718 GO:0015727 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031347 GO:0031410 GO:0031982 GO:0034220 GO:0035873 GO:0036293 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046685 GO:0046942 GO:0046943 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0065007 GO:0070482 GO:0071702 GO:0071944 GO:0080134 GO:0080170 GO:0097708 GO:0098588 GO:0098656 GO:0098805 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

272

Amino Acids

29.21

Weight (kDa)

8.52

Isoelectric Point (pI)

32.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	34 - 245	5.6e-65	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31885 AT1G31885 AT1G31885 AT2G29870 AT2G34390 AT2G34390 AT2G34390 AT2G34390 AT4G18910 AT4G18910 AT4G19030 AT4G19030 AT4G19030
fragaria_vesca	FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07090 FvH4_6g07990 FvH4_6g08000 FvH4_6g08000 FvH4_6g08000
malus_domestica	MD00G1007200.v1.1 MD10G1273700.v1.1
prunus_persica	Prupe.4G068700_v2.0.a1
pyrus_communis	pycom05g27250 pycom10g22860
rosa_chinensis	RchiOBHm_Chr5g0012031 RchiOBHm_Chr5g0012041 RchiOBHm_Chr6g0279421
rosa_laevigata	RLG00000013147 RLG00000031880 RLG00000031881
rosa_multiflora	Rmu_sc0002519.1_g000006 Rmu_sc0020506.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064540 Rroxscaffold_1G00064560 Rroxscaffold_2G00109780 Rroxscaffold_7G00188910
rosa_rugosa	Rorug02G0319800 Rorug04G0460400 Rorug06G0124200
rosa_samantha	Rh5AG092600 Rh5BG088400 Rh5BG088600 Rh5CG102200 Rh5DG088900 Rh5DG089000 Rh6AG233100 Rh6BG237400 Rh6CG239600 Rh6DG231500
rosa_wichuraiana	Rw2G030270 Rw5G008080 Rw5G008090 Rw6G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	208
Acc36I	ACCTGC	1 cut(s)	334
Acc65I	GGTACC	1 cut(s)	395
AccB1I	GGYRCC	3 cut(s)	281, 395, 722
AccI	GTMKAC	2 cut(s)	732, 804
AciI	CCGC	3 cut(s)	218, 297, 808
AclWI	GGATC	1 cut(s)	385
AcoI	YGGCCR	1 cut(s)	525
AcsI	RAATTY	1 cut(s)	184
AcyI	GRCGYC	1 cut(s)	801
AfaI	GTAC	2 cut(s)	348, 397
AfiI	CCNNNNNNNGG	2 cut(s)	614, 707
AgsI	TTSAA	4 cut(s)	47, 190, 292, 796
AhdI	GACNNNNNGTC	1 cut(s)	242
AhlI	ACTAGT	1 cut(s)	238
AluBI	AGCT	4 cut(s)	553, 642, 772, 786
AluI	AGCT	4 cut(s)	553, 642, 772, 786
Alw21I	GWGCWC	2 cut(s)	255, 774
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	385
AoxI	GGCC	5 cut(s)	90, 525, 605, 646, 676
ApeKI	GCWGC	2 cut(s)	317, 362
ApoI	RAATTY	1 cut(s)	184
Asp718I	GGTACC	1 cut(s)	395
AspS9I	GGNCC	3 cut(s)	90, 605, 647
AsuHPI	GGTGA	2 cut(s)	690, 766
AxyI	CCTNAGG	1 cut(s)	401
BaeGI	GKGCMC	2 cut(s)	143, 286
BalI	TGGCCA	1 cut(s)	527
BanI	GGYRCC	3 cut(s)	281, 395, 722
BanII	GRGCYC	1 cut(s)	774
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	2 cut(s)	255, 774
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	304, 349
BceAI	ACGGC	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	216
BcuI	ACTAGT	1 cut(s)	238
BfaI	CTAG	3 cut(s)	239, 450, 783
BfmI	CTRYAG	1 cut(s)	464
BfuAI	ACCTGC	1 cut(s)	334
BisI	GCNGC	2 cut(s)	318, 363
BlsI	GCNGC	2 cut(s)	319, 364
BmeRI	GACNNNNNGTC	1 cut(s)	242
BmgT120I	GGNCC	3 cut(s)	90, 605, 647
BmiI	GGNNCC	5 cut(s)	283, 397, 574, 665, 724
BmsI	GCATC	1 cut(s)	629
BpiI	GAAGAC	1 cut(s)	432
BpmI	CTGGAG	2 cut(s)	567, 682
Bpu10I	CCTNAGC	2 cut(s)	129, 643
BpuEI	CTTGAG	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	801
BsaJI	CCNNGG	2 cut(s)	335, 726
BsaWI	WCCGGW	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	2 cut(s)	614, 707
Bse1I	ACTGG	2 cut(s)	550, 608
Bse21I	CCTNAGG	1 cut(s)	401
Bse3DI	GCAATG	1 cut(s)	123
BseDI	CCNNGG	2 cut(s)	335, 726
BseLI	CCNNNNNNNGG	2 cut(s)	614, 707
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	2 cut(s)	120, 276
BseNI	ACTGG	2 cut(s)	550, 608
BseSI	GKGCMC	2 cut(s)	143, 286
BseXI	GCAGC	2 cut(s)	304, 349
BseYI	CCCAGC	2 cut(s)	557, 631
Bsh1285I	CGRYCG	1 cut(s)	808
BshFI	GGCC	5 cut(s)	92, 527, 607, 648, 678
BshNI	GGYRCC	3 cut(s)	281, 395, 722
BsiEI	CGRYCG	1 cut(s)	808
BsiHKAI	GWGCWC	2 cut(s)	255, 774
BsiSI	CCGG	2 cut(s)	215, 279
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	2 cut(s)	614, 707
BsmAI	GTCTC	1 cut(s)	216
BsmBI	CGTCTC	1 cut(s)	216
BsmFI	GGGAC	1 cut(s)	249
BsnI	GGCC	5 cut(s)	92, 527, 607, 648, 678
Bsp1286I	GDGCHC	4 cut(s)	143, 255, 286, 774
Bsp143I	GATC	1 cut(s)	377
Bsp19I	CCATGG	1 cut(s)	335
BspACI	CCGC	3 cut(s)	218, 297, 808
BspANI	GGCC	5 cut(s)	92, 527, 607, 648, 678
BspCNI	CTCAG	2 cut(s)	121, 275
BspHI	TCATGA	1 cut(s)	13
BspLI	GGNNCC	5 cut(s)	283, 397, 574, 665, 724
BspMAI	CTGCAG	1 cut(s)	468
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	1 cut(s)	385
BspT107I	GGYRCC	3 cut(s)	281, 395, 722
BsrDI	GCAATG	1 cut(s)	123
BsrI	ACTGG	2 cut(s)	550, 608
BssECI	CCNNGG	2 cut(s)	335, 726
BssMI	GATC	1 cut(s)	377
BssNI	GRCGYC	1 cut(s)	801
BssT1I	CCWWGG	2 cut(s)	335, 726
Bst4CI	ACNGT	1 cut(s)	205
BstACI	GRCGYC	1 cut(s)	801
BstC8I	GCNNGC	2 cut(s)	555, 564
BstDEI	CTNAG	5 cut(s)	129, 262, 324, 401, 643
BstDSI	CCRYGG	1 cut(s)	335
BstKTI	GATC	1 cut(s)	380
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	377
BstMCI	CGRYCG	1 cut(s)	808
BstMWI	GCNNNNNNNGC	4 cut(s)	317, 559, 563, 807
BstSFI	CTRYAG	1 cut(s)	464
BstSLI	GKGCMC	2 cut(s)	143, 286
BstV1I	GCAGC	2 cut(s)	304, 349
BstV2I	GAAGAC	1 cut(s)	432
BstXI	CCANNNNNNTGG	1 cut(s)	437
Bsu36I	CCTNAGG	1 cut(s)	401
BsuRI	GGCC	5 cut(s)	92, 527, 607, 648, 678
BtgI	CCRYGG	1 cut(s)	335
BtsIMutI	CAGTG	2 cut(s)	46, 528
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	2 cut(s)	555, 564
CciI	TCATGA	1 cut(s)	13
Cfr13I	GGNCC	3 cut(s)	90, 605, 647
CseI	GACGC	1 cut(s)	790
Csp6I	GTAC	2 cut(s)	347, 396
CviAII	CATG	7 cut(s)	14, 32, 247, 336, 422, 505, 767
CviQI	GTAC	2 cut(s)	347, 396
DdeI	CTNAG	5 cut(s)	129, 262, 324, 401, 643
DpnI	GATC	1 cut(s)	379
DpnII	GATC	1 cut(s)	377
DrdI	GACNNNNNNGTC	1 cut(s)	208
DriI	GACNNNNNGTC	1 cut(s)	242
DseDI	GACNNNNNNGTC	1 cut(s)	208
EaeI	YGGCCR	1 cut(s)	525
Eam1105I	GACNNNNNGTC	1 cut(s)	242
Ecl136II	GAGCTC	1 cut(s)	772
Eco130I	CCWWGG	2 cut(s)	335, 726
Eco147I	AGGCCT	1 cut(s)	678
Eco24I	GRGCYC	1 cut(s)	774
Eco53kI	GAGCTC	1 cut(s)	772
Eco81I	CCTNAGG	1 cut(s)	401
EcoICRI	GAGCTC	1 cut(s)	772
EcoO109I	RGGNCCY	1 cut(s)	647
EcoT14I	CCWWGG	2 cut(s)	335, 726
EcoT38I	GRGCYC	1 cut(s)	774
ErhI	CCWWGG	2 cut(s)	335, 726
Esp3I	CGTCTC	1 cut(s)	216
FaeI	CATG	7 cut(s)	17, 35, 250, 339, 425, 508, 770
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	7 cut(s)	13, 31, 246, 335, 421, 504, 766
FauI	CCCGC	1 cut(s)	304
FblI	GTMKAC	2 cut(s)	732, 804
Fnu4HI	GCNGC	2 cut(s)	318, 363
FriOI	GRGCYC	1 cut(s)	774
Fsp4HI	GCNGC	2 cut(s)	318, 363
FspBI	CTAG	3 cut(s)	239, 450, 783
GluI	GCNGC	2 cut(s)	318, 363
GsaI	CCCAGC	2 cut(s)	561, 635
GsuI	CTGGAG	2 cut(s)	567, 682
HaeIII	GGCC	5 cut(s)	92, 527, 607, 648, 678
HapII	CCGG	2 cut(s)	215, 279
HgaI	GACGC	1 cut(s)	790
Hin1I	GRCGYC	1 cut(s)	801
Hin1II	CATG	7 cut(s)	17, 35, 250, 339, 425, 508, 770
HincII	GTYRAC	1 cut(s)	805
HindII	GTYRAC	1 cut(s)	805
HindIII	AAGCTT	1 cut(s)	640
HinfI	GANTC	3 cut(s)	10, 80, 703
HpaII	CCGG	2 cut(s)	215, 279
HphI	GGTGA	2 cut(s)	690, 766
Hpy166II	GTNNAC	2 cut(s)	733, 805
Hpy188I	TCNGA	2 cut(s)	588, 746
Hpy188III	TCNNGA	5 cut(s)	14, 151, 475, 661, 793
Hpy8I	GTNNAC	2 cut(s)	733, 805
Hpy99I	CGWCG	1 cut(s)	806
HpyAV	CCTTC	2 cut(s)	69, 112
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	7 cut(s)	115, 224, 466, 566, 602, 653, 766
HpyF10VI	GCNNNNNNNGC	4 cut(s)	317, 559, 563, 807
HpyF3I	CTNAG	5 cut(s)	129, 262, 324, 401, 643
Hsp92I	GRCGYC	1 cut(s)	801
Hsp92II	CATG	7 cut(s)	17, 35, 250, 339, 425, 508, 770
KpnI	GGTACC	1 cut(s)	399
Kzo9I	GATC	1 cut(s)	377
LmnI	GCTCC	4 cut(s)	578, 617, 663, 710
Lsp1109I	GCAGC	2 cut(s)	304, 349
LweI	GCATC	1 cut(s)	629
MaeI	CTAG	3 cut(s)	239, 450, 783
MaeIII	GTNAC	4 cut(s)	269, 301, 610, 696
MalI	GATC	1 cut(s)	379
MboI	GATC	1 cut(s)	377
MboII	GAAGA	3 cut(s)	59, 437, 575
MfeI	CAATTG	2 cut(s)	225, 654
MhlI	GDGCHC	4 cut(s)	143, 255, 286, 774
MlsI	TGGCCA	1 cut(s)	527
MluCI	AATT	5 cut(s)	184, 225, 256, 579, 654
MluNI	TGGCCA	1 cut(s)	527
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	5 cut(s)	73, 124, 321, 512, 771
Mox20I	TGGCCA	1 cut(s)	527
MscI	TGGCCA	1 cut(s)	527
MseI	TTAA	1 cut(s)	414
Msp20I	TGGCCA	1 cut(s)	527
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	2 cut(s)	215, 279
MunI	CAATTG	2 cut(s)	225, 654
MwoI	GCNNNNNNNGC	4 cut(s)	317, 559, 563, 807
NcoI	CCATGG	1 cut(s)	335
NdeII	GATC	1 cut(s)	377
NlaIII	CATG	7 cut(s)	17, 35, 250, 339, 425, 508, 770
NlaIV	GGNNCC	5 cut(s)	283, 397, 574, 665, 724
NmuCI	GTSAC	3 cut(s)	269, 301, 696
PagI	TCATGA	1 cut(s)	13
PceI	AGGCCT	1 cut(s)	678
PfeI	GAWTC	3 cut(s)	10, 80, 703
PflFI	GACNNNGTC	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	319, 364
Psp124BI	GAGCTC	1 cut(s)	774
PspFI	CCCAGC	2 cut(s)	557, 631
PspN4I	GGNNCC	5 cut(s)	283, 397, 574, 665, 724
PspPI	GGNCC	3 cut(s)	90, 605, 647
PstI	CTGCAG	1 cut(s)	468
PsyI	GACNNNGTC	1 cut(s)	205
RsaI	GTAC	2 cut(s)	348, 397
RsaNI	GTAC	2 cut(s)	347, 396
SacI	GAGCTC	1 cut(s)	774
SalI	GTCGAC	1 cut(s)	803
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	2 cut(s)	318, 363
Sau3AI	GATC	1 cut(s)	377
Sau96I	GGNCC	3 cut(s)	90, 605, 647
SduI	GDGCHC	4 cut(s)	143, 255, 286, 774
SfaNI	GCATC	1 cut(s)	629
SfcI	CTRYAG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
SpeI	ACTAGT	1 cut(s)	238
Sse9I	AATT	5 cut(s)	184, 225, 256, 579, 654
SseBI	AGGCCT	1 cut(s)	678
SsiI	CCGC	3 cut(s)	218, 297, 808
SspMI	CTAG	3 cut(s)	239, 450, 783
SstI	GAGCTC	1 cut(s)	774
StuI	AGGCCT	1 cut(s)	678
StyI	CCWWGG	2 cut(s)	335, 726
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	1 cut(s)	804
TasI	AATT	5 cut(s)	184, 225, 256, 579, 654
TfiI	GAWTC	3 cut(s)	10, 80, 703
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	2 cut(s)	46, 535
TseFI	GTSAC	3 cut(s)	269, 301, 696
TseI	GCWGC	2 cut(s)	317, 362
Tsp45I	GTSAC	3 cut(s)	269, 301, 696
TspDTI	ATGAA	4 cut(s)	30, 438, 475, 641
TspRI	CASTG	2 cut(s)	46, 535
Tth111I	GACNNNGTC	1 cut(s)	205
XapI	RAATTY	1 cut(s)	184
XmiI	GTMKAC	2 cut(s)	732, 804
XspI	CTAG	3 cut(s)	239, 450, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.