Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001055

Physical Location & Seq

Genomic Coordinates Reverse (-)

10421521 .. 10423508

Gene Structure 1988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G19030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCGGATATCTCGGGAAACGGCTATGGCAACGCCAGAGAAGAAGTAGTAATGGTGAATCTCAAGGATGAAGTCGAACATCAACAAGAAATGGAAGACATTCATAACCCAAGACCCTTGAAGAAACAAGACTCTCTACTCTCAGTCTCTGTCCCTTTCTTACAAAAGTTGATCGCGGAGTTTCTTGGAACCTACTTTTTGGTATTCACCGGTTGTGCATCGGTGGTTGTAAACATGCAAAACGACAATGTCGTGACTCTTCCAGGGATCGCTATCGTTTGGGGACTCACCATTATGGTCCTCATTTACTCTCTTGGTCACATCTCTGGTGCTCATATCAATCCGGCCGTTACCATTGCCTTCGCCTCTTGTGGCCGTTTCCCTCTCAAACAGGTTCCAGCTTATGTCATATCACAAGTGATAGGATCAACGCTCGCGGCTGCGACATTACGGTTGTTGTTCGGACTTGATCACGACGTTTGTAGCGGAAAACACGATGTGTTTATCGGATCATCACCAGTGGGATCAGATCTTCAGGCGTTTACGATGGAGTTTATCGTCACTTTCTATCTAATGTTCATCATTTCTGGCGTTGCTACCGATAATAGAGCGATCGGAGAACTTGCTGGATTAGCAATAGGATCAACGGTGCTACTTAACGTGCTAATTGCCGCACCGGTATCGAGTGCGTCGATGAATCCAGGAAGAAGTTTAGGACCTGCACTGGTCTATGGTTGCTACAAAGGAATTTGGATATACTTAGTTGCGCCAACTCTTGGTGCGATTGCGGGTGCATGGGTTTATAACACAGTTAGATATACCGATAAACCATTGCGAGAAATCACTAAAAGTGGTTCATTTCTAAAGACCGTGAGAATCGGTAGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005215 GO:0005342 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009628 GO:0012505 GO:0012506 GO:0015075 GO:0015103 GO:0015105 GO:0015129 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015700 GO:0015711 GO:0015718 GO:0015727 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031347 GO:0031410 GO:0031982 GO:0034220 GO:0035873 GO:0036293 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046685 GO:0046942 GO:0046943 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0065007 GO:0070482 GO:0071702 GO:0071944 GO:0080134 GO:0080170 GO:0097708 GO:0098588 GO:0098656 GO:0098805 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

296

Amino Acids

31.71

Weight (kDa)

6.29

Isoelectric Point (pI)

28.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	50 - 206	7.5e-41	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31885 AT1G31885 AT1G31885 AT2G29870 AT2G34390 AT2G34390 AT2G34390 AT2G34390 AT4G18910 AT4G18910 AT4G19030 AT4G19030 AT4G19030
fragaria_vesca	FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07090 FvH4_6g07990 FvH4_6g08000 FvH4_6g08000 FvH4_6g08000
malus_domestica	MD00G1007200.v1.1 MD10G1273700.v1.1
prunus_persica	Prupe.4G068700_v2.0.a1
pyrus_communis	pycom05g27250 pycom10g22860
rosa_chinensis	RchiOBHm_Chr5g0012031 RchiOBHm_Chr5g0012041 RchiOBHm_Chr6g0279421
rosa_laevigata	RLG00000013147 RLG00000031880 RLG00000031881
rosa_multiflora	Rmu_sc0002519.1_g000006 Rmu_sc0020506.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064540 Rroxscaffold_1G00064560 Rroxscaffold_2G00109780 Rroxscaffold_7G00188910
rosa_rugosa	Rorug02G0319800 Rorug04G0460400 Rorug06G0124200
rosa_samantha	Rh5AG092600 Rh5BG088400 Rh5BG088600 Rh5CG102200 Rh5DG088900 Rh5DG089000 Rh6AG233100 Rh6BG237400 Rh6CG239600 Rh6DG231500
rosa_wichuraiana	Rw2G030270 Rw5G008080 Rw5G008090 Rw6G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	804
Acc36I	ACCTGC	1 cut(s)	727
AccB7I	CCANNNNNTGG	1 cut(s)	776
AccII	CGCG	2 cut(s)	176, 437
AciI	CCGC	6 cut(s)	5, 176, 437, 486, 672, 788
AclWI	GGATC	5 cut(s)	275, 433, 517, 532, 649
AcoI	YGGCCR	2 cut(s)	345, 373
AcsI	RAATTY	1 cut(s)	747
AcuI	CTGAAG	1 cut(s)	518
AdeI	CACNNNGTG	1 cut(s)	499
AfiI	CCNNNNNNNGG	1 cut(s)	776
AgeI	ACCGGT	2 cut(s)	209, 676
AgsI	TTSAA	1 cut(s)	121
AjnI	CCWGG	2 cut(s)	262, 700
AluBI	AGCT	1 cut(s)	401
AluI	AGCT	1 cut(s)	401
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	5 cut(s)	275, 433, 517, 532, 649
AlwNI	CAGNNNCTG	1 cut(s)	149
Ama87I	CYCGRG	1 cut(s)	13
AoxI	GGCC	2 cut(s)	345, 373
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	1 cut(s)	747
AsiGI	ACCGGT	2 cut(s)	209, 676
Asp700I	GAANNNNTTC	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	769
AspS9I	GGNCC	2 cut(s)	298, 716
AsuHPI	GGTGA	4 cut(s)	67, 199, 280, 507
AvaI	CYCGRG	1 cut(s)	13
AvaII	GGWCC	2 cut(s)	298, 716
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	1 cut(s)	541
BceAI	ACGGC	3 cut(s)	37, 332, 360
BcgI	CGANNNNNNTGC	2 cut(s)	663, 697
BciT130I	CCWGG	2 cut(s)	264, 702
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	151
BfuAI	ACCTGC	1 cut(s)	727
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	3 cut(s)	438, 441, 672
BlsI	GCNGC	3 cut(s)	439, 442, 673
Bme1390I	CCNGG	2 cut(s)	264, 702
Bme18I	GGWCC	2 cut(s)	298, 716
BmeT110I	CYCGRG	1 cut(s)	13
BmgT120I	GGNCC	2 cut(s)	298, 716
BmiI	GGNNCC	2 cut(s)	190, 396
BmrFI	CCNGG	2 cut(s)	264, 702
BmsI	GCATC	1 cut(s)	227
BpiI	GAAGAC	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	47
BsaBI	GATNNNNATC	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	263
BsaWI	WCCGGW	2 cut(s)	209, 676
Bsc4I	CCNNNNNNNGG	1 cut(s)	776
Bse118I	RCCGGY	2 cut(s)	209, 676
Bse1I	ACTGG	2 cut(s)	518, 729
Bse3DI	GCAATG	2 cut(s)	354, 830
Bse8I	GATNNNNATC	1 cut(s)	272
BseBI	CCWGG	2 cut(s)	264, 702
BseDI	CCNNGG	1 cut(s)	263
BseGI	GGATG	1 cut(s)	73
BseJI	GATNNNNATC	1 cut(s)	272
BseLI	CCNNNNNNNGG	1 cut(s)	776
BseMI	GCAATG	2 cut(s)	354, 830
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	2 cut(s)	518, 729
BseX3I	CGGCCG	1 cut(s)	345
BseXI	GCAGC	1 cut(s)	427
BsgI	GTGCAG	1 cut(s)	705
Bsh1236I	CGCG	2 cut(s)	176, 437
Bsh1285I	CGRYCG	2 cut(s)	348, 615
BshFI	GGCC	2 cut(s)	347, 375
BshTI	ACCGGT	2 cut(s)	209, 676
BsiEI	CGRYCG	2 cut(s)	348, 615
BsiHKAI	GWGCWC	1 cut(s)	334
BsiHKCI	CYCGRG	1 cut(s)	13
BsiSI	CCGG	3 cut(s)	210, 344, 677
BslFI	GGGAC	2 cut(s)	137, 297
BslI	CCNNNNNNNGG	1 cut(s)	776
BsmAI	GTCTC	1 cut(s)	151
BsmFI	GGGAC	2 cut(s)	137, 297
BsnI	GGCC	2 cut(s)	347, 375
BsoBI	CYCGRG	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	9 cut(s)	171, 267, 425, 469, 509, 524, 529, 612, 641
BspACI	CCGC	6 cut(s)	5, 176, 437, 486, 672, 788
BspANI	GGCC	2 cut(s)	347, 375
BspCNI	CTCAG	1 cut(s)	155
BspFNI	CGCG	2 cut(s)	176, 437
BspLI	GGNNCC	2 cut(s)	190, 396
BspMI	ACCTGC	1 cut(s)	727
BspPI	GGATC	5 cut(s)	275, 433, 517, 532, 649
BsrDI	GCAATG	2 cut(s)	354, 830
BsrFI	RCCGGY	2 cut(s)	209, 676
BsrI	ACTGG	2 cut(s)	518, 729
BssAI	RCCGGY	2 cut(s)	209, 676
BssECI	CCNNGG	1 cut(s)	263
BssMI	GATC	9 cut(s)	171, 267, 425, 469, 509, 524, 529, 612, 641
Bst2UI	CCWGG	2 cut(s)	264, 702
Bst4CI	ACNGT	4 cut(s)	453, 649, 811, 871
Bst6I	CTCTTC	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	2 cut(s)	142, 760
BstF5I	GGATG	1 cut(s)	73
BstFNI	CGCG	2 cut(s)	176, 437
BstHHI	GCGC	1 cut(s)	769
BstKTI	GATC	9 cut(s)	174, 270, 428, 472, 512, 527, 532, 615, 644
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	9 cut(s)	171, 267, 425, 469, 509, 524, 529, 612, 641
BstMCI	CGRYCG	2 cut(s)	348, 615
BstMWI	GCNNNNNNNGC	1 cut(s)	632
BstNI	CCWGG	2 cut(s)	264, 702
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	262, 700
BstUI	CGCG	2 cut(s)	176, 437
BstV1I	GCAGC	1 cut(s)	427
BstV2I	GAAGAC	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BstZI	CGGCCG	1 cut(s)	345
BsuRI	GGCC	2 cut(s)	347, 375
BtsCI	GGATG	1 cut(s)	73
BtsIMutI	CAGTG	2 cut(s)	525, 722
BveI	ACCTGC	1 cut(s)	727
Cac8I	GCNNGC	1 cut(s)	435
CaiI	CAGNNNCTG	1 cut(s)	149
CfoI	GCGC	1 cut(s)	769
Cfr10I	RCCGGY	2 cut(s)	209, 676
Cfr13I	GGNCC	2 cut(s)	298, 716
CseI	GACGC	1 cut(s)	678
CspAI	ACCGGT	2 cut(s)	209, 676
CviAII	CATG	2 cut(s)	235, 795
CviJI	RGCY	5 cut(s)	24, 347, 375, 401, 440
CviKI_1	RGCY	5 cut(s)	24, 347, 375, 401, 440
DdeI	CTNAG	2 cut(s)	142, 760
DpnI	GATC	9 cut(s)	173, 269, 427, 471, 511, 526, 531, 614, 643
DpnII	GATC	9 cut(s)	171, 267, 425, 469, 509, 524, 529, 612, 641
DraIII	CACNNNGTG	1 cut(s)	499
EaeI	YGGCCR	2 cut(s)	345, 373
EagI	CGGCCG	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
EciI	GGCGGA	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	345
Eco32I	GATATC	1 cut(s)	10
Eco47I	GGWCC	2 cut(s)	298, 716
Eco52I	CGGCCG	1 cut(s)	345
Eco57I	CTGAAG	1 cut(s)	518
Eco88I	CYCGRG	1 cut(s)	13
EcoO109I	RGGNCCY	1 cut(s)	716
EcoRII	CCWGG	2 cut(s)	262, 700
EcoRV	GATATC	1 cut(s)	10
FaeI	CATG	2 cut(s)	238, 798
FaqI	GGGAC	2 cut(s)	137, 297
FatI	CATG	2 cut(s)	234, 794
FauI	CCCGC	1 cut(s)	781
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	3 cut(s)	438, 441, 672
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	3 cut(s)	438, 441, 672
GlaI	GCGC	1 cut(s)	768
GluI	GCNGC	3 cut(s)	438, 441, 672
HaeIII	GGCC	2 cut(s)	347, 375
HapII	CCGG	3 cut(s)	210, 344, 677
HgaI	GACGC	1 cut(s)	678
HhaI	GCGC	1 cut(s)	769
Hin1II	CATG	2 cut(s)	238, 798
Hin6I	GCGC	1 cut(s)	767
HinP1I	GCGC	1 cut(s)	767
HinfI	GANTC	6 cut(s)	58, 131, 256, 285, 697, 876
HpaII	CCGG	3 cut(s)	210, 344, 677
HphI	GGTGA	4 cut(s)	67, 199, 280, 507
Hpy166II	GTNNAC	2 cut(s)	232, 543
Hpy188I	TCNGA	4 cut(s)	464, 509, 529, 617
Hpy188III	TCNNGA	3 cut(s)	15, 253, 473
Hpy8I	GTNNAC	2 cut(s)	232, 543
Hpy99I	CGWCG	2 cut(s)	479, 694
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	4 cut(s)	453, 649, 811, 871
HpyCH4IV	ACGT	2 cut(s)	477, 660
HpyCH4V	TGCA	4 cut(s)	218, 238, 722, 794
HpyF10VI	GCNNNNNNNGC	1 cut(s)	632
HpyF3I	CTNAG	2 cut(s)	142, 760
HpySE526I	ACGT	2 cut(s)	477, 660
Hsp92II	CATG	2 cut(s)	238, 798
HspAI	GCGC	1 cut(s)	767
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	9 cut(s)	171, 267, 425, 469, 509, 524, 529, 612, 641
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	1 cut(s)	227
MaeII	ACGT	2 cut(s)	477, 660
MaeIII	GTNAC	4 cut(s)	253, 317, 349, 559
MalI	GATC	9 cut(s)	173, 269, 427, 471, 511, 526, 531, 614, 643
MboI	GATC	9 cut(s)	171, 267, 425, 469, 509, 524, 529, 612, 641
MboII	GAAGA	6 cut(s)	53, 107, 133, 251, 524, 717
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	2 cut(s)	666, 747
MlyI	GAGTC	3 cut(s)	125, 250, 279
MnlI	CCTC	3 cut(s)	311, 376, 393
MroXI	GAANNNNTTC	1 cut(s)	99
MseI	TTAA	1 cut(s)	657
MslI	CAYNNNNRTG	1 cut(s)	293
MspI	CCGG	3 cut(s)	210, 344, 677
MspR9I	CCNGG	2 cut(s)	264, 702
MvaI	CCWGG	2 cut(s)	264, 702
MvnI	CGCG	2 cut(s)	176, 437
MwoI	GCNNNNNNNGC	1 cut(s)	632
NdeII	GATC	9 cut(s)	171, 267, 425, 469, 509, 524, 529, 612, 641
NlaIII	CATG	2 cut(s)	238, 798
NlaIV	GGNNCC	2 cut(s)	190, 396
NmuCI	GTSAC	3 cut(s)	253, 317, 559
NspI	RCATGY	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	2 cut(s)	249, 689
PdmI	GAANNNNTTC	1 cut(s)	99
PfeI	GAWTC	3 cut(s)	58, 697, 876
PflFI	GACNNNGTC	1 cut(s)	248
PflMI	CCANNNNNTGG	1 cut(s)	776
PfoI	TCCNGGA	1 cut(s)	700
PinAI	ACCGGT	2 cut(s)	209, 676
PkrI	GCNGC	3 cut(s)	439, 442, 673
Ple19I	CGATCG	1 cut(s)	615
PleI	GAGTC	3 cut(s)	125, 250, 279
PpsI	GAGTC	3 cut(s)	125, 250, 279
PpuMI	RGGWCCY	1 cut(s)	716
PsiI	TTATAA	1 cut(s)	804
Psp5II	RGGWCCY	1 cut(s)	716
Psp6I	CCWGG	2 cut(s)	262, 700
PspGI	CCWGG	2 cut(s)	262, 700
PspN4I	GGNNCC	2 cut(s)	190, 396
PspPI	GGNCC	2 cut(s)	298, 716
PspPPI	RGGWCCY	1 cut(s)	716
PstNI	CAGNNNCTG	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	529
PsyI	GACNNNGTC	1 cut(s)	248
PvuI	CGATCG	1 cut(s)	615
RseI	CAYNNNNRTG	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	657
SatI	GCNGC	3 cut(s)	438, 441, 672
Sau3AI	GATC	9 cut(s)	171, 267, 425, 469, 509, 524, 529, 612, 641
Sau96I	GGNCC	2 cut(s)	298, 716
SchI	GAGTC	3 cut(s)	125, 250, 279
ScrFI	CCNGG	2 cut(s)	264, 702
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	6 cut(s)	194, 396, 403, 480, 663, 721
SfaNI	GCATC	1 cut(s)	227
SinI	GGWCC	2 cut(s)	298, 716
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	2 cut(s)	666, 747
SsiI	CCGC	6 cut(s)	5, 176, 437, 486, 672, 788
StyD4I	CCNGG	2 cut(s)	262, 700
TaaI	ACNGT	4 cut(s)	453, 649, 811, 871
TaiI	ACGT	2 cut(s)	480, 663
TaqI	TCGA	3 cut(s)	75, 683, 692
TasI	AATT	2 cut(s)	666, 747
TauI	GCSGC	2 cut(s)	440, 674
TfiI	GAWTC	3 cut(s)	58, 697, 876
Tru1I	TTAA	1 cut(s)	657
Tru9I	TTAA	1 cut(s)	657
TscAI	CASTG	2 cut(s)	525, 729
TseFI	GTSAC	3 cut(s)	253, 317, 559
TseI	GCWGC	1 cut(s)	440
Tsp45I	GTSAC	3 cut(s)	253, 317, 559
TspDTI	ATGAA	5 cut(s)	84, 92, 568, 710, 846
TspRI	CASTG	2 cut(s)	525, 729
Tth111I	GACNNNGTC	1 cut(s)	248
Van91I	CCANNNNNTGG	1 cut(s)	776
VpaK11BI	GGWCC	2 cut(s)	298, 716
XapI	RAATTY	1 cut(s)	747
XceI	RCATGY	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.