Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001055

Physical Location & Seq

Genomic Coordinates Reverse (-)

40519447 .. 40521057

Gene Structure 1611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG239600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCAGAGAATCTTGCAACCAATGGAAGCCATGTTCTCAATGTTGAAAATGACAAACCTTGCTCCAATACCAACCAAGAATCAAGCAGTAGCTTTTTCTGTGTACCCTTTATGCAGAAGGTGATTGCTGAGGTGTTGGGGACATACTTTATGATATTGACGGGTTGTGGGTCTGTGGTGGTGAATTTGAACACAGAAAATACGGTGTCGTTTCCAGGGATTGCAATAGTTTGGGGACTGGTTGTGATGGTCTTGATTTACTCTGTTGGTCACATCTCTGGTGCTCATTTCAATCCTGCTGTCACTATTGCTTTTGCTACCACCAAGAGATTTCCATGGAAACAGGTACCCCCTTATATTGCTGCTCAAGTCCTTGGATCAACATTTGCAAGTGGTACACTCAGACTTCTGTTTAACAAGCATCAAGACCACTTTGTAGGAACAAGTCCCAGTGGAACTCCCTTGCAGTCTCTCGTGATTGAGTTCATAATCACATTTTACCTCATGTTTGTTGTTTCTGGTGTTGCTACTGATAACAGAGCGGTTAGTACGTACTATTCTACCTGTACCTCTACTGCAGCACTAGTCCTGAACTCTGGAGTTTTTCAGTTAAAAACTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005215 GO:0005342 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009628 GO:0012505 GO:0012506 GO:0015075 GO:0015103 GO:0015105 GO:0015129 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015700 GO:0015711 GO:0015718 GO:0015727 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031347 GO:0031410 GO:0031982 GO:0034220 GO:0035873 GO:0036293 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046685 GO:0046942 GO:0046943 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0065007 GO:0070482 GO:0071702 GO:0071944 GO:0080134 GO:0080170 GO:0097708 GO:0098588 GO:0098656 GO:0098805 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

207

Amino Acids

22.32

Weight (kDa)

6.94

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	35 - 183	6.6e-40	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31885 AT1G31885 AT1G31885 AT2G29870 AT2G34390 AT2G34390 AT2G34390 AT2G34390 AT4G18910 AT4G18910 AT4G19030 AT4G19030 AT4G19030
fragaria_vesca	FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07090 FvH4_6g07990 FvH4_6g08000 FvH4_6g08000 FvH4_6g08000
malus_domestica	MD00G1007200.v1.1 MD10G1273700.v1.1
prunus_persica	Prupe.4G068700_v2.0.a1
pyrus_communis	pycom05g27250 pycom10g22860
rosa_chinensis	RchiOBHm_Chr5g0012031 RchiOBHm_Chr5g0012041 RchiOBHm_Chr6g0279421
rosa_laevigata	RLG00000013147 RLG00000031880 RLG00000031881
rosa_multiflora	Rmu_sc0002519.1_g000006 Rmu_sc0020506.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064540 Rroxscaffold_1G00064560 Rroxscaffold_2G00109780 Rroxscaffold_7G00188910
rosa_rugosa	Rorug02G0319800 Rorug04G0460400 Rorug06G0124200
rosa_samantha	Rh5AG092600 Rh5BG088400 Rh5BG088600 Rh5CG102200 Rh5DG088900 Rh5DG089000 Rh6AG233100 Rh6BG237400 Rh6CG239600 Rh6DG231500
rosa_wichuraiana	Rw2G030270 Rw5G008080 Rw5G008090 Rw6G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	346
AccB1I	GGYRCC	1 cut(s)	346
AccBSI	CCGCTC	1 cut(s)	542
AciI	CCGC	1 cut(s)	542
AclWI	GGATC	1 cut(s)	385
AcsI	RAATTY	1 cut(s)	184
AfaI	GTAC	6 cut(s)	105, 348, 397, 550, 554, 568
AgsI	TTSAA	3 cut(s)	47, 190, 292
AhlI	ACTAGT	1 cut(s)	583
AjnI	CCWGG	1 cut(s)	214
AloI	GAACNNNNNNTCC	2 cut(s)	18, 50
AluBI	AGCT	1 cut(s)	93
AluI	AGCT	1 cut(s)	93
Alw21I	GWGCWC	1 cut(s)	286
Alw26I	GTCTC	1 cut(s)	474
AlwI	GGATC	1 cut(s)	385
ApeKI	GCWGC	2 cut(s)	362, 578
ApoI	RAATTY	1 cut(s)	184
Asp718I	GGTACC	1 cut(s)	346
AsuHPI	GGTGA	2 cut(s)	133, 193
BanI	GGYRCC	1 cut(s)	346
BauI	CACGAG	1 cut(s)	473
Bbv12I	GWGCWC	1 cut(s)	286
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	349, 590
BccI	CCATC	1 cut(s)	241
BciT130I	CCWGG	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	474
BcuI	ACTAGT	1 cut(s)	583
BfaI	CTAG	1 cut(s)	584
BfmI	CTRYAG	1 cut(s)	576
BisI	GCNGC	2 cut(s)	363, 579
BlsI	GCNGC	2 cut(s)	364, 580
Bme1390I	CCNGG	1 cut(s)	216
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	1 cut(s)	216
BmrI	ACTGGG	1 cut(s)	444
BmsI	GCATC	1 cut(s)	430
BmuI	ACTGGG	1 cut(s)	444
BpmI	CTGGAG	1 cut(s)	618
Bpu10I	CCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	552
BsaJI	CCNNGG	3 cut(s)	215, 335, 373
Bse1I	ACTGG	2 cut(s)	243, 450
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	3 cut(s)	215, 335, 373
BseMII	CTCAG	2 cut(s)	120, 415
BseNI	ACTGG	2 cut(s)	243, 450
BseXI	GCAGC	2 cut(s)	349, 590
BshNI	GGYRCC	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	286
BslFI	GGGAC	3 cut(s)	154, 249, 432
BsmAI	GTCTC	1 cut(s)	474
BsmFI	GGGAC	3 cut(s)	154, 249, 432
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	1 cut(s)	377
Bsp19I	CCATGG	1 cut(s)	335
BspACI	CCGC	1 cut(s)	542
BspCNI	CTCAG	2 cut(s)	121, 414
BspLI	GGNNCC	1 cut(s)	348
BspMAI	CTGCAG	1 cut(s)	580
BspPI	GGATC	1 cut(s)	385
BspT107I	GGYRCC	1 cut(s)	346
BsrBI	CCGCTC	1 cut(s)	542
BsrI	ACTGG	2 cut(s)	243, 450
BssECI	CCNNGG	3 cut(s)	215, 335, 373
BssMI	GATC	1 cut(s)	377
BssSI	CACGAG	1 cut(s)	473
BssT1I	CCWWGG	2 cut(s)	335, 373
Bst2BI	CACGAG	1 cut(s)	473
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	205
BstBAI	YACGTR	1 cut(s)	552
BstDEI	CTNAG	2 cut(s)	129, 401
BstDSI	CCRYGG	1 cut(s)	335
BstKTI	GATC	1 cut(s)	380
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	1 cut(s)	377
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	214
BstSFI	CTRYAG	1 cut(s)	576
BstSNI	TACGTA	1 cut(s)	552
BstV1I	GCAGC	2 cut(s)	349, 590
BtgI	CCRYGG	1 cut(s)	335
BtsIMutI	CAGTG	1 cut(s)	457
Csp6I	GTAC	6 cut(s)	104, 347, 396, 549, 553, 567
CviAII	CATG	3 cut(s)	32, 336, 505
CviJI	RGCY	2 cut(s)	30, 93
CviKI_1	RGCY	2 cut(s)	30, 93
CviQI	GTAC	6 cut(s)	104, 347, 396, 549, 553, 567
DdeI	CTNAG	2 cut(s)	129, 401
DpnI	GATC	1 cut(s)	379
DpnII	GATC	1 cut(s)	377
Eco105I	TACGTA	1 cut(s)	552
Eco130I	CCWWGG	2 cut(s)	335, 373
EcoRII	CCWGG	1 cut(s)	214
EcoT14I	CCWWGG	2 cut(s)	335, 373
ErhI	CCWWGG	2 cut(s)	335, 373
FaeI	CATG	3 cut(s)	35, 339, 508
FaiI	YATR	8 cut(s)	33, 113, 145, 152, 337, 357, 488, 506
FaqI	GGGAC	3 cut(s)	154, 249, 432
FatI	CATG	3 cut(s)	31, 335, 504
Fnu4HI	GCNGC	2 cut(s)	363, 579
Fsp4HI	GCNGC	2 cut(s)	363, 579
FspBI	CTAG	1 cut(s)	584
GluI	GCNGC	2 cut(s)	363, 579
GsuI	CTGGAG	1 cut(s)	618
Hin1II	CATG	3 cut(s)	35, 339, 508
HinfI	GANTC	2 cut(s)	10, 80
HphI	GGTGA	2 cut(s)	133, 193
Hpy166II	GTNNAC	2 cut(s)	104, 398
Hpy188I	TCNGA	1 cut(s)	404
Hpy188III	TCNNGA	5 cut(s)	253, 425, 475, 589, 597
Hpy8I	GTNNAC	2 cut(s)	104, 398
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	1 cut(s)	551
HpyCH4V	TGCA	6 cut(s)	17, 115, 224, 389, 466, 578
HpyF3I	CTNAG	2 cut(s)	129, 401
HpySE526I	ACGT	1 cut(s)	551
Hsp92II	CATG	3 cut(s)	35, 339, 508
KpnI	GGTACC	1 cut(s)	350
Kzo9I	GATC	1 cut(s)	377
LmnI	GCTCC	1 cut(s)	68
Lsp1109I	GCAGC	2 cut(s)	349, 590
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	1 cut(s)	584
MaeII	ACGT	1 cut(s)	551
MaeIII	GTNAC	2 cut(s)	269, 301
MalI	GATC	1 cut(s)	379
MbiI	CCGCTC	1 cut(s)	542
MboI	GATC	1 cut(s)	377
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	1 cut(s)	184
MnlI	CCTC	3 cut(s)	124, 512, 580
MseI	TTAA	2 cut(s)	414, 611
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
NcoI	CCATGG	1 cut(s)	335
NdeII	GATC	1 cut(s)	377
NlaIII	CATG	3 cut(s)	35, 339, 508
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	2 cut(s)	269, 301
PfeI	GAWTC	2 cut(s)	10, 80
PkrI	GCNGC	2 cut(s)	364, 580
Ppu21I	YACGTR	1 cut(s)	552
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	348
PstI	CTGCAG	1 cut(s)	580
RsaI	GTAC	6 cut(s)	105, 348, 397, 550, 554, 568
RsaNI	GTAC	6 cut(s)	104, 347, 396, 549, 553, 567
SaqAI	TTAA	2 cut(s)	414, 611
SatI	GCNGC	2 cut(s)	363, 579
Sau3AI	GATC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	286
SfaNI	GCATC	1 cut(s)	430
SfcI	CTRYAG	1 cut(s)	576
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
SnaBI	TACGTA	1 cut(s)	552
SpeI	ACTAGT	1 cut(s)	583
Sse9I	AATT	1 cut(s)	184
SsiI	CCGC	1 cut(s)	542
SspMI	CTAG	1 cut(s)	584
StyD4I	CCNGG	1 cut(s)	214
StyI	CCWWGG	2 cut(s)	335, 373
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	1 cut(s)	554
TasI	AATT	1 cut(s)	184
TfiI	GAWTC	2 cut(s)	10, 80
Tru1I	TTAA	2 cut(s)	414, 611
Tru9I	TTAA	2 cut(s)	414, 611
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	2 cut(s)	269, 301
TseI	GCWGC	2 cut(s)	362, 578
Tsp45I	GTSAC	2 cut(s)	269, 301
TspDTI	ATGAA	1 cut(s)	475
TspRI	CASTG	1 cut(s)	457
XapI	RAATTY	1 cut(s)	184
XspI	CTAG	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.