Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001055

Physical Location & Seq

Genomic Coordinates Reverse (-)

28274815 .. 28276957

Gene Structure 2143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCTGAGACTACAGAAACTAATGGAACCCATGTCTTGAATGTTGAAGATGGTGATGCCAATCACAAAAACAACCAAGAATCCGGCAGCTTTTGTGTCTCTGTCCCTTTCATGCAAAAGGTGTTTGCTGAGGTGCTGGGAACCTACTTCGTGATATTTGCAGGTTGTGGGTCTGTGGTGGTGAATTTGGTCTCAGACAAGACGGTGTCGTTTCCTGGGATTTCTATTGTTTGGGGGCTTGTTGTGATGGTCATGATTTACTCTGTTGGTCACATCTCTGGTGCCCATTTCAATCCTGCTGTCACCATTGCCTTTGCAGTGACCAAGAGGTTTCCACTCAAGCAGGTACCTGCTTATGTAGGAGCTCAAATTCTTGGATCAACACTTGCAGCTGGTACTCTTAGATTGATCTTCAATGGGCCCCAAAACCACTTTGCAGGAACAATTCCTTCTGGAACTCCCTTCCAGTCATTTGTGATTGAATTCATCATCACATTTTACCTCATGTTTGTTGTTTCTGGTGTTGCCACTGATAATCGAGCGATTGGAGAGCTTGCCGGGCTTGCGGTTGGTGCTACGGTTCTTCTTAACGTGATGTGTACAGGACAGATTTCAGGAGCATCAATGAACCCAGCAAGAAGCATAGGACCTGCAATTGCATCATGGCACTATAAGCACCTGTGGGTATACATTTTTGGACCAACTCTTGGAGCTGTGAGTGGTGCCTTGGTCTACAATGTCATCAGGTTTACAGACAAGCCGCTGCGCGAGATCACTAAGAGTAGCTCTTTCTTAAAAGGAGTGGGGCGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005215 GO:0005342 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009628 GO:0012505 GO:0012506 GO:0015075 GO:0015103 GO:0015105 GO:0015129 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015700 GO:0015711 GO:0015718 GO:0015727 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031347 GO:0031410 GO:0031982 GO:0034220 GO:0035873 GO:0036293 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046685 GO:0046942 GO:0046943 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0065007 GO:0070482 GO:0071702 GO:0071944 GO:0080134 GO:0080170 GO:0097708 GO:0098588 GO:0098656 GO:0098805 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

272

Amino Acids

28.84

Weight (kDa)

8.78

Isoelectric Point (pI)

28.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	34 - 245	1.6e-62	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31885 AT1G31885 AT1G31885 AT2G29870 AT2G34390 AT2G34390 AT2G34390 AT2G34390 AT4G18910 AT4G18910 AT4G19030 AT4G19030 AT4G19030
fragaria_vesca	FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07090 FvH4_6g07990 FvH4_6g08000 FvH4_6g08000 FvH4_6g08000
malus_domestica	MD00G1007200.v1.1 MD10G1273700.v1.1
prunus_persica	Prupe.4G068700_v2.0.a1
pyrus_communis	pycom05g27250 pycom10g22860
rosa_chinensis	RchiOBHm_Chr5g0012031 RchiOBHm_Chr5g0012041 RchiOBHm_Chr6g0279421
rosa_laevigata	RLG00000013147 RLG00000031880 RLG00000031881
rosa_multiflora	Rmu_sc0002519.1_g000006 Rmu_sc0020506.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064540 Rroxscaffold_1G00064560 Rroxscaffold_2G00109780 Rroxscaffold_7G00188910
rosa_rugosa	Rorug02G0319800 Rorug04G0460400 Rorug06G0124200
rosa_samantha	Rh5AG092600 Rh5BG088400 Rh5BG088600 Rh5CG102200 Rh5DG088900 Rh5DG089000 Rh6AG233100 Rh6BG237400 Rh6CG239600 Rh6DG231500
rosa_wichuraiana	Rw2G030270 Rw5G008080 Rw5G008090 Rw6G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	4 cut(s)	152, 334, 358, 658
Acc65I	GGTACC	1 cut(s)	346
AccB1I	GGYRCC	3 cut(s)	281, 346, 722
AccB7I	CCANNNNNTGG	1 cut(s)	707
AccI	GTMKAC	2 cut(s)	687, 732
AccII	CGCG	1 cut(s)	768
AciI	CCGC	2 cut(s)	566, 761
AclWI	GGATC	1 cut(s)	385
AcsI	RAATTY	3 cut(s)	184, 369, 482
AfaI	GTAC	3 cut(s)	348, 397, 601
AfiI	CCNNNNNNNGG	1 cut(s)	707
AgsI	TTSAA	5 cut(s)	40, 47, 292, 415, 482
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	6 cut(s)	90, 365, 392, 553, 713, 786
AluI	AGCT	6 cut(s)	90, 365, 392, 553, 713, 786
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	3 cut(s)	2, 103, 196
AlwI	GGATC	1 cut(s)	385
AoxI	GGCC	1 cut(s)	419
ApaI	GGGCCC	1 cut(s)	423
ApeKI	GCWGC	3 cut(s)	87, 389, 763
ApoI	RAATTY	3 cut(s)	184, 369, 482
Asp718I	GGTACC	1 cut(s)	346
AspLEI	GCGC	2 cut(s)	768, 810
AspS9I	GGNCC	4 cut(s)	419, 420, 647, 698
AsuC2I	CCSGG	1 cut(s)	559
AsuHPI	GGTGA	3 cut(s)	65, 193, 295
AvaII	GGWCC	2 cut(s)	647, 698
BaeGI	GKGCMC	2 cut(s)	286, 423
BanI	GGYRCC	3 cut(s)	281, 346, 722
BanII	GRGCYC	2 cut(s)	367, 423
Bbv12I	GWGCWC	1 cut(s)	367
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	3 cut(s)	99, 401, 750
BccI	CCATC	2 cut(s)	44, 241
BciT130I	CCWGG	1 cut(s)	216
BcnI	CCSGG	1 cut(s)	559
BcoDI	GTCTC	3 cut(s)	2, 103, 196
BfmI	CTRYAG	1 cut(s)	12
BfuAI	ACCTGC	4 cut(s)	152, 334, 358, 658
BisI	GCNGC	4 cut(s)	88, 390, 761, 764
BlsI	GCNGC	4 cut(s)	89, 391, 762, 765
Bme1390I	CCNGG	2 cut(s)	216, 559
Bme18I	GGWCC	2 cut(s)	647, 698
BmgT120I	GGNCC	4 cut(s)	419, 420, 647, 698
BmiI	GGNNCC	7 cut(s)	28, 142, 283, 348, 421, 422, 724
BmrFI	CCNGG	2 cut(s)	216, 559
BmsI	GCATC	3 cut(s)	46, 629, 668
Bpu10I	CCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	559
BsaBI	GATNNNNATC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	215, 726
Bsc4I	CCNNNNNNNGG	1 cut(s)	707
Bse1I	ACTGG	1 cut(s)	466
Bse3DI	GCAATG	1 cut(s)	306
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	215, 726
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	707
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	2 cut(s)	120, 207
BseNI	ACTGG	1 cut(s)	466
BseSI	GKGCMC	2 cut(s)	286, 423
BseXI	GCAGC	3 cut(s)	99, 401, 750
BseYI	CCCAGC	2 cut(s)	136, 631
Bsh1236I	CGCG	1 cut(s)	768
BshFI	GGCC	1 cut(s)	421
BshNI	GGYRCC	3 cut(s)	281, 346, 722
BsiHKAI	GWGCWC	1 cut(s)	367
BsiSI	CCGG	2 cut(s)	84, 558
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	707
BsmAI	GTCTC	3 cut(s)	2, 103, 196
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	421
Bso31I	GGTCTC	1 cut(s)	196
Bsp120I	GGGCCC	1 cut(s)	419
Bsp1286I	GDGCHC	3 cut(s)	286, 367, 423
Bsp1407I	TGTACA	1 cut(s)	599
Bsp143I	GATC	3 cut(s)	377, 408, 771
BspACI	CCGC	2 cut(s)	566, 761
BspANI	GGCC	1 cut(s)	421
BspCNI	CTCAG	2 cut(s)	121, 206
BspFNI	CGCG	1 cut(s)	768
BspHI	TCATGA	1 cut(s)	252
BspLI	GGNNCC	7 cut(s)	28, 142, 283, 348, 421, 422, 724
BspMI	ACCTGC	4 cut(s)	152, 334, 358, 658
BspPI	GGATC	1 cut(s)	385
BspT107I	GGYRCC	3 cut(s)	281, 346, 722
BspTNI	GGTCTC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	306
BsrGI	TGTACA	1 cut(s)	599
BsrI	ACTGG	1 cut(s)	466
BssECI	CCNNGG	2 cut(s)	215, 726
BssMI	GATC	3 cut(s)	377, 408, 771
BssNAI	GTATAC	1 cut(s)	688
BssT1I	CCWWGG	1 cut(s)	726
Bst1107I	GTATAC	1 cut(s)	688
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	205, 580
BstAUI	TGTACA	1 cut(s)	599
BstC8I	GCNNGC	2 cut(s)	555, 564
BstDEI	CTNAG	5 cut(s)	6, 129, 193, 401, 777
BstFNI	CGCG	1 cut(s)	768
BstHHI	GCGC	2 cut(s)	768, 810
BstKTI	GATC	3 cut(s)	380, 411, 774
BstMAI	GTCTC	3 cut(s)	2, 103, 196
BstMBI	GATC	3 cut(s)	377, 408, 771
BstMWI	GCNNNNNNNGC	4 cut(s)	559, 563, 572, 673
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	2 cut(s)	214, 557
BstSFI	CTRYAG	1 cut(s)	12
BstSLI	GKGCMC	2 cut(s)	286, 423
BstUI	CGCG	1 cut(s)	768
BstV1I	GCAGC	3 cut(s)	99, 401, 750
BstZ17I	GTATAC	1 cut(s)	688
BsuRI	GGCC	1 cut(s)	421
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	2 cut(s)	324, 528
BveI	ACCTGC	4 cut(s)	152, 334, 358, 658
Cac8I	GCNNGC	2 cut(s)	555, 564
CciI	TCATGA	1 cut(s)	252
CfoI	GCGC	2 cut(s)	768, 810
Cfr13I	GGNCC	4 cut(s)	419, 420, 647, 698
Csp6I	GTAC	3 cut(s)	347, 396, 600
CviAII	CATG	5 cut(s)	32, 112, 253, 505, 663
CviQI	GTAC	3 cut(s)	347, 396, 600
DdeI	CTNAG	5 cut(s)	6, 129, 193, 401, 777
DpnI	GATC	3 cut(s)	379, 410, 773
DpnII	GATC	3 cut(s)	377, 408, 771
Ecl136II	GAGCTC	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	726
Eco24I	GRGCYC	2 cut(s)	367, 423
Eco31I	GGTCTC	1 cut(s)	196
Eco47I	GGWCC	2 cut(s)	647, 698
Eco53kI	GAGCTC	1 cut(s)	365
EcoICRI	GAGCTC	1 cut(s)	365
EcoO109I	RGGNCCY	2 cut(s)	420, 647
EcoRI	GAATTC	1 cut(s)	482
EcoRII	CCWGG	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	726
EcoT38I	GRGCYC	2 cut(s)	367, 423
ErhI	CCWWGG	1 cut(s)	726
FaeI	CATG	5 cut(s)	35, 115, 256, 508, 666
FaiI	YATR	9 cut(s)	33, 113, 254, 357, 506, 644, 664, 672, 688
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	5 cut(s)	31, 111, 252, 504, 662
FblI	GTMKAC	2 cut(s)	687, 732
Fnu4HI	GCNGC	4 cut(s)	88, 390, 761, 764
FriOI	GRGCYC	2 cut(s)	367, 423
Fsp4HI	GCNGC	4 cut(s)	88, 390, 761, 764
GlaI	GCGC	2 cut(s)	767, 809
GluI	GCNGC	4 cut(s)	88, 390, 761, 764
GsaI	CCCAGC	2 cut(s)	140, 635
HaeIII	GGCC	1 cut(s)	421
HapII	CCGG	2 cut(s)	84, 558
HhaI	GCGC	2 cut(s)	768, 810
Hin1II	CATG	5 cut(s)	35, 115, 256, 508, 666
Hin6I	GCGC	2 cut(s)	766, 808
HinP1I	GCGC	2 cut(s)	766, 808
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	2 cut(s)	84, 558
HphI	GGTGA	3 cut(s)	65, 193, 295
Hpy166II	GTNNAC	4 cut(s)	600, 688, 733, 750
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	5 cut(s)	37, 151, 253, 453, 615
Hpy8I	GTNNAC	4 cut(s)	600, 688, 733, 750
HpyAV	CCTTC	2 cut(s)	459, 472
HpyCH4III	ACNGT	2 cut(s)	205, 580
HpyCH4IV	ACGT	1 cut(s)	591
HpyCH4V	TGCA	7 cut(s)	115, 161, 317, 389, 437, 653, 659
HpyF10VI	GCNNNNNNNGC	4 cut(s)	559, 563, 572, 673
HpyF3I	CTNAG	5 cut(s)	6, 129, 193, 401, 777
HpySE526I	ACGT	1 cut(s)	591
Hsp92II	CATG	5 cut(s)	35, 115, 256, 508, 666
HspAI	GCGC	2 cut(s)	766, 808
KpnI	GGTACC	1 cut(s)	350
Kzo9I	GATC	3 cut(s)	377, 408, 771
LmnI	GCTCC	3 cut(s)	362, 617, 710
Lsp1109I	GCAGC	3 cut(s)	99, 401, 750
LweI	GCATC	3 cut(s)	46, 629, 668
MaeII	ACGT	1 cut(s)	591
MaeIII	GTNAC	3 cut(s)	269, 301, 319
MalI	GATC	3 cut(s)	379, 410, 773
MboI	GATC	3 cut(s)	377, 408, 771
MboII	GAAGA	3 cut(s)	59, 403, 575
MfeI	CAATTG	1 cut(s)	654
MhlI	GDGCHC	3 cut(s)	286, 367, 423
MluCI	AATT	6 cut(s)	184, 369, 444, 482, 654, 811
MnlI	CCTC	3 cut(s)	124, 321, 512
MseI	TTAA	3 cut(s)	588, 794, 814
MspA1I	CMGCKG	2 cut(s)	392, 763
MspI	CCGG	2 cut(s)	84, 558
MspR9I	CCNGG	2 cut(s)	216, 559
MunI	CAATTG	1 cut(s)	654
MvaI	CCWGG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	768
MwoI	GCNNNNNNNGC	4 cut(s)	559, 563, 572, 673
NciI	CCSGG	1 cut(s)	559
NdeII	GATC	3 cut(s)	377, 408, 771
NlaIII	CATG	5 cut(s)	35, 115, 256, 508, 666
NlaIV	GGNNCC	7 cut(s)	28, 142, 283, 348, 421, 422, 724
NmuCI	GTSAC	3 cut(s)	269, 301, 319
PagI	TCATGA	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	80
PflFI	GACNNNGTC	1 cut(s)	205
PflMI	CCANNNNNTGG	1 cut(s)	707
PkrI	GCNGC	4 cut(s)	89, 391, 762, 765
PpuMI	RGGWCCY	1 cut(s)	647
Psp124BI	GAGCTC	1 cut(s)	367
Psp5II	RGGWCCY	1 cut(s)	647
Psp6I	CCWGG	1 cut(s)	214
PspFI	CCCAGC	2 cut(s)	136, 631
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	7 cut(s)	28, 142, 283, 348, 421, 422, 724
PspOMI	GGGCCC	1 cut(s)	419
PspPI	GGNCC	4 cut(s)	419, 420, 647, 698
PspPPI	RGGWCCY	1 cut(s)	647
PsyI	GACNNNGTC	1 cut(s)	205
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	3 cut(s)	348, 397, 601
RsaNI	GTAC	3 cut(s)	347, 396, 600
SacI	GAGCTC	1 cut(s)	367
SaqAI	TTAA	3 cut(s)	588, 794, 814
SatI	GCNGC	4 cut(s)	88, 390, 761, 764
Sau3AI	GATC	3 cut(s)	377, 408, 771
Sau96I	GGNCC	4 cut(s)	419, 420, 647, 698
ScrFI	CCNGG	2 cut(s)	216, 559
SduI	GDGCHC	3 cut(s)	286, 367, 423
SfaNI	GCATC	3 cut(s)	46, 629, 668
SfcI	CTRYAG	1 cut(s)	12
SinI	GGWCC	2 cut(s)	647, 698
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	6 cut(s)	184, 369, 444, 482, 654, 811
SsiI	CCGC	2 cut(s)	566, 761
SstI	GAGCTC	1 cut(s)	367
StyD4I	CCNGG	2 cut(s)	214, 557
StyI	CCWWGG	1 cut(s)	726
TaaI	ACNGT	2 cut(s)	205, 580
TaiI	ACGT	1 cut(s)	594
TaqI	TCGA	1 cut(s)	538
TasI	AATT	6 cut(s)	184, 369, 444, 482, 654, 811
TatI	WGTACW	1 cut(s)	599
TauI	GCSGC	1 cut(s)	763
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	3 cut(s)	588, 794, 814
Tru9I	TTAA	3 cut(s)	588, 794, 814
TscAI	CASTG	2 cut(s)	324, 535
TseFI	GTSAC	3 cut(s)	269, 301, 319
TseI	GCWGC	3 cut(s)	87, 389, 763
Tsp45I	GTSAC	3 cut(s)	269, 301, 319
TspDTI	ATGAA	3 cut(s)	100, 475, 641
TspRI	CASTG	2 cut(s)	324, 535
Tth111I	GACNNNGTC	1 cut(s)	205
Van91I	CCANNNNNTGG	1 cut(s)	707
VpaK11BI	GGWCC	2 cut(s)	647, 698
XapI	RAATTY	3 cut(s)	184, 369, 482
XmiI	GTMKAC	2 cut(s)	687, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.