Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001055

Physical Location & Seq

Genomic Coordinates Forward (+)

3331846 .. 3334243

Gene Structure 2398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G068700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCTGAGACTTCAGGAGCTAATGGTAATGGAACCCATGTTTTCAATGTTGAAGATGGTGATGGCAACAGTCACAGACTTTCCCAGTCTTCCACCAAAACCAACCAAGAATCAAGCAGTTTTGGTCTCTCTGTGCCTTTCATGCAGAAGGTGATTGCTGAGGTGTTGGGTACATACTTCGTGGTATTTGCAGGCTGTGGGGCTGTGGTGGTGAATTTGAGCACAGATAAGACGGTGTCGTTTCCAGGAATTTCAATTGTTTGGGGACTGGTTGTGATGGTCATGGTTTACTCTGTTGGTCACATCTCTGGTGCCCATTTTAATCCTGCTGTCACCATTGCTTTTGCCATTACCAAGAGGTTTCCATGGAAACAGGTACCGGCTTACATAGCAGCTCAAGTCCTTGGATCAACACTTGCAAGTGGTACCCTTAGACTAATATTCCAGGGGCACCAGAACCATTTTGCTGGAACAATTCCTACTGGAAATCCCTGGCAGTCATTTGCGATTGAGTTCGTTATCACATTTTACCTCATGTTTGTTATTTCTGGTGTTGCCACAGATAACAGAGCGATTGGAGAGCTTGCTGGGCTTGCGGTTGGCGCTACGGTTCTTCTTAACGTGATGTTTGCAGGGCCAATCTCAGGAGCATCAATGAACCCAGCAAGAAGCGTAGGACCTGCAATTGTTTCAACCCAATATAAGCACCTCTGGGTTTACATTTTTGCACCAACTCTTGGGGCTGTGTGTGGTGCTTTGGTCTATAATGTTATCAGGTTCTCAGACAAGCCTCTGCGTGAGATCACCAAGAGTAGCTCTTTCTTAAAAGGCGTGGGGAGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005215 GO:0005342 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009628 GO:0012505 GO:0012506 GO:0015075 GO:0015103 GO:0015105 GO:0015129 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015700 GO:0015711 GO:0015718 GO:0015727 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031347 GO:0031410 GO:0031982 GO:0034220 GO:0035873 GO:0036293 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046685 GO:0046942 GO:0046943 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0065007 GO:0070482 GO:0071702 GO:0071944 GO:0080134 GO:0080170 GO:0097708 GO:0098588 GO:0098656 GO:0098805 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

282

Amino Acids

29.75

Weight (kDa)

9.27

Isoelectric Point (pI)

22.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31885 AT1G31885 AT1G31885 AT2G29870 AT2G34390 AT2G34390 AT2G34390 AT2G34390 AT4G18910 AT4G18910 AT4G19030 AT4G19030 AT4G19030
fragaria_vesca	FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07090 FvH4_6g07990 FvH4_6g08000 FvH4_6g08000 FvH4_6g08000
malus_domestica	MD00G1007200.v1.1 MD10G1273700.v1.1
prunus_persica	Prupe.4G068700_v2.0.a1
pyrus_communis	pycom05g27250 pycom10g22860
rosa_chinensis	RchiOBHm_Chr5g0012031 RchiOBHm_Chr5g0012041 RchiOBHm_Chr6g0279421
rosa_laevigata	RLG00000013147 RLG00000031880 RLG00000031881
rosa_multiflora	Rmu_sc0002519.1_g000006 Rmu_sc0020506.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064540 Rroxscaffold_1G00064560 Rroxscaffold_2G00109780 Rroxscaffold_7G00188910
rosa_rugosa	Rorug02G0319800 Rorug04G0460400 Rorug06G0124200
rosa_samantha	Rh5AG092600 Rh5BG088400 Rh5BG088600 Rh5CG102200 Rh5DG088900 Rh5DG089000 Rh6AG233100 Rh6BG237400 Rh6CG239600 Rh6DG231500
rosa_wichuraiana	Rw2G030270 Rw5G008080 Rw5G008090 Rw6G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	688
Acc65I	GGTACC	2 cut(s)	376, 425
AccB1I	GGYRCC	4 cut(s)	311, 376, 425, 450
AccB7I	CCANNNNNTGG	1 cut(s)	737
AciI	CCGC	1 cut(s)	596
AclWI	GGATC	1 cut(s)	415
AcsI	RAATTY	2 cut(s)	214, 249
AfaI	GTAC	3 cut(s)	172, 378, 427
AfiI	CCNNNNNNNGG	2 cut(s)	644, 737
AgsI	TTSAA	4 cut(s)	46, 53, 255, 693
AjnI	CCWGG	3 cut(s)	244, 444, 491
AluBI	AGCT	4 cut(s)	20, 395, 583, 816
AluI	AGCT	4 cut(s)	20, 395, 583, 816
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	2 cut(s)	2, 131
AlwI	GGATC	1 cut(s)	415
AoxI	GGCC	1 cut(s)	635
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	2 cut(s)	214, 249
Asp718I	GGTACC	2 cut(s)	376, 425
AspLEI	GCGC	1 cut(s)	605
AspS9I	GGNCC	2 cut(s)	635, 677
AsuHPI	GGTGA	5 cut(s)	71, 163, 223, 325, 796
AvaII	GGWCC	1 cut(s)	677
BaeGI	GKGCMC	2 cut(s)	316, 453
BanI	GGYRCC	4 cut(s)	311, 376, 425, 450
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	224
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	404
BccI	CCATC	3 cut(s)	50, 56, 271
BciT130I	CCWGG	3 cut(s)	246, 446, 493
BcoDI	GTCTC	2 cut(s)	2, 131
BfoI	RGCGCY	1 cut(s)	606
BfuAI	ACCTGC	1 cut(s)	688
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	3 cut(s)	246, 446, 493
Bme18I	GGWCC	1 cut(s)	677
BmgT120I	GGNCC	2 cut(s)	635, 677
BmiI	GGNNCC	5 cut(s)	34, 313, 378, 427, 452
BmrFI	CCNGG	3 cut(s)	246, 446, 493
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	1 cut(s)	659
BmuI	ACTGGG	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	81
Bpu10I	CCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	381
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	4 cut(s)	365, 403, 445, 491
Bsc4I	CCNNNNNNNGG	2 cut(s)	644, 737
Bse118I	RCCGGY	1 cut(s)	379
Bse1I	ACTGG	3 cut(s)	85, 273, 487
Bse3DI	GCAATG	1 cut(s)	336
BseBI	CCWGG	3 cut(s)	246, 446, 493
BseDI	CCNNGG	4 cut(s)	365, 403, 445, 491
BseLI	CCNNNNNNNGG	2 cut(s)	644, 737
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	3 cut(s)	150, 657, 795
BseNI	ACTGG	3 cut(s)	85, 273, 487
BseSI	GKGCMC	2 cut(s)	316, 453
BseXI	GCAGC	1 cut(s)	404
BseYI	CCCAGC	2 cut(s)	587, 661
BshFI	GGCC	1 cut(s)	637
BshNI	GGYRCC	4 cut(s)	311, 376, 425, 450
BsiHKAI	GWGCWC	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	2 cut(s)	644, 737
BsmAI	GTCTC	2 cut(s)	2, 131
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	1 cut(s)	637
Bso31I	GGTCTC	1 cut(s)	131
Bsp1286I	GDGCHC	3 cut(s)	224, 316, 453
Bsp143I	GATC	2 cut(s)	407, 801
Bsp19I	CCATGG	1 cut(s)	365
BspACI	CCGC	1 cut(s)	596
BspANI	GGCC	1 cut(s)	637
BspCNI	CTCAG	3 cut(s)	151, 656, 794
BspLI	GGNNCC	5 cut(s)	34, 313, 378, 427, 452
BspMI	ACCTGC	1 cut(s)	688
BspPI	GGATC	1 cut(s)	415
BspT107I	GGYRCC	4 cut(s)	311, 376, 425, 450
BspTNI	GGTCTC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	379
BsrI	ACTGG	3 cut(s)	85, 273, 487
BssAI	RCCGGY	1 cut(s)	379
BssECI	CCNNGG	4 cut(s)	365, 403, 445, 491
BssMI	GATC	2 cut(s)	407, 801
BssT1I	CCWWGG	2 cut(s)	365, 403
Bst2UI	CCWGG	3 cut(s)	246, 446, 493
Bst4CI	ACNGT	3 cut(s)	71, 235, 610
BstC8I	GCNNGC	3 cut(s)	193, 585, 594
BstDEI	CTNAG	5 cut(s)	6, 159, 431, 643, 781
BstDSI	CCRYGG	1 cut(s)	365
BstH2I	RGCGCY	1 cut(s)	606
BstHHI	GCGC	1 cut(s)	605
BstKTI	GATC	2 cut(s)	410, 804
BstMAI	GTCTC	2 cut(s)	2, 131
BstMBI	GATC	2 cut(s)	407, 801
BstMWI	GCNNNNNNNGC	6 cut(s)	142, 389, 589, 593, 602, 837
BstNI	CCWGG	3 cut(s)	246, 446, 493
BstSCI	CCNGG	3 cut(s)	244, 444, 491
BstSLI	GKGCMC	2 cut(s)	316, 453
BstV1I	GCAGC	1 cut(s)	404
BstV2I	GAAGAC	1 cut(s)	81
BstXI	CCANNNNNNTGG	1 cut(s)	467
BsuRI	GGCC	1 cut(s)	637
BtgI	CCRYGG	1 cut(s)	365
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	3 cut(s)	193, 585, 594
CfoI	GCGC	1 cut(s)	605
Cfr10I	RCCGGY	1 cut(s)	379
Cfr13I	GGNCC	2 cut(s)	635, 677
Csp6I	GTAC	3 cut(s)	171, 377, 426
CviAII	CATG	5 cut(s)	38, 142, 283, 366, 535
CviQI	GTAC	3 cut(s)	171, 377, 426
DdeI	CTNAG	5 cut(s)	6, 159, 431, 643, 781
DpnI	GATC	2 cut(s)	409, 803
DpnII	GATC	2 cut(s)	407, 801
Eco130I	CCWWGG	2 cut(s)	365, 403
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	677
EcoO109I	RGGNCCY	1 cut(s)	677
EcoRII	CCWGG	3 cut(s)	244, 444, 491
EcoT14I	CCWWGG	2 cut(s)	365, 403
ErhI	CCWWGG	2 cut(s)	365, 403
FaeI	CATG	5 cut(s)	41, 145, 286, 369, 538
FaiI	YATR	9 cut(s)	39, 143, 175, 284, 367, 389, 536, 702, 765
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	5 cut(s)	37, 141, 282, 365, 534
Fnu4HI	GCNGC	1 cut(s)	393
Fsp4HI	GCNGC	1 cut(s)	393
GlaI	GCGC	1 cut(s)	604
GluI	GCNGC	1 cut(s)	393
GsaI	CCCAGC	2 cut(s)	591, 665
HaeII	RGCGCY	1 cut(s)	606
HaeIII	GGCC	1 cut(s)	637
HapII	CCGG	1 cut(s)	380
HhaI	GCGC	1 cut(s)	605
Hin1II	CATG	5 cut(s)	41, 145, 286, 369, 538
Hin6I	GCGC	1 cut(s)	603
HinP1I	GCGC	1 cut(s)	603
HinfI	GANTC	1 cut(s)	110
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	5 cut(s)	71, 163, 223, 325, 796
Hpy166II	GTNNAC	2 cut(s)	289, 718
Hpy188I	TCNGA	1 cut(s)	784
Hpy188III	TCNNGA	2 cut(s)	15, 645
Hpy8I	GTNNAC	2 cut(s)	289, 718
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	3 cut(s)	71, 235, 610
HpyCH4IV	ACGT	1 cut(s)	621
HpyCH4V	TGCA	6 cut(s)	145, 191, 419, 632, 683, 728
HpyF10VI	GCNNNNNNNGC	6 cut(s)	142, 389, 589, 593, 602, 837
HpyF3I	CTNAG	5 cut(s)	6, 159, 431, 643, 781
HpySE526I	ACGT	1 cut(s)	621
Hsp92II	CATG	5 cut(s)	41, 145, 286, 369, 538
HspAI	GCGC	1 cut(s)	603
KpnI	GGTACC	2 cut(s)	380, 429
Kzo9I	GATC	2 cut(s)	407, 801
LmnI	GCTCC	3 cut(s)	17, 647, 837
Lsp1109I	GCAGC	1 cut(s)	404
LweI	GCATC	1 cut(s)	659
MaeII	ACGT	1 cut(s)	621
MaeIII	GTNAC	3 cut(s)	71, 299, 331
MalI	GATC	2 cut(s)	409, 803
MboI	GATC	2 cut(s)	407, 801
MboII	GAAGA	3 cut(s)	65, 81, 605
MfeI	CAATTG	2 cut(s)	255, 684
MhlI	GDGCHC	3 cut(s)	224, 316, 453
MluCI	AATT	5 cut(s)	214, 249, 255, 474, 684
MnlI	CCTC	5 cut(s)	154, 351, 542, 719, 801
MseI	TTAA	3 cut(s)	321, 618, 824
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	3 cut(s)	246, 446, 493
MunI	CAATTG	2 cut(s)	255, 684
MvaI	CCWGG	3 cut(s)	246, 446, 493
MwoI	GCNNNNNNNGC	6 cut(s)	142, 389, 589, 593, 602, 837
NcoI	CCATGG	1 cut(s)	365
NdeII	GATC	2 cut(s)	407, 801
NlaIII	CATG	5 cut(s)	41, 145, 286, 369, 538
NlaIV	GGNNCC	5 cut(s)	34, 313, 378, 427, 452
NmuCI	GTSAC	3 cut(s)	71, 299, 331
PfeI	GAWTC	1 cut(s)	110
PflFI	GACNNNGTC	1 cut(s)	235
PflMI	CCANNNNNTGG	1 cut(s)	737
PfoI	TCCNGGA	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	394
PpuMI	RGGWCCY	1 cut(s)	677
Psp5II	RGGWCCY	1 cut(s)	677
Psp6I	CCWGG	3 cut(s)	244, 444, 491
PspFI	CCCAGC	2 cut(s)	587, 661
PspGI	CCWGG	3 cut(s)	244, 444, 491
PspN4I	GGNNCC	5 cut(s)	34, 313, 378, 427, 452
PspPI	GGNCC	2 cut(s)	635, 677
PspPPI	RGGWCCY	1 cut(s)	677
PsrI	GAACNNNNNNTAC	2 cut(s)	463, 495
PsyI	GACNNNGTC	1 cut(s)	235
RsaI	GTAC	3 cut(s)	172, 378, 427
RsaNI	GTAC	3 cut(s)	171, 377, 426
SaqAI	TTAA	3 cut(s)	321, 618, 824
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	2 cut(s)	407, 801
Sau96I	GGNCC	2 cut(s)	635, 677
ScrFI	CCNGG	3 cut(s)	246, 446, 493
SduI	GDGCHC	3 cut(s)	224, 316, 453
SfaNI	GCATC	1 cut(s)	659
SinI	GGWCC	1 cut(s)	677
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
Sse9I	AATT	5 cut(s)	214, 249, 255, 474, 684
SsiI	CCGC	1 cut(s)	596
SspI	AATATT	1 cut(s)	441
StyD4I	CCNGG	3 cut(s)	244, 444, 491
StyI	CCWWGG	2 cut(s)	365, 403
TaaI	ACNGT	3 cut(s)	71, 235, 610
TaiI	ACGT	1 cut(s)	624
TasI	AATT	5 cut(s)	214, 249, 255, 474, 684
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	3 cut(s)	321, 618, 824
Tru9I	TTAA	3 cut(s)	321, 618, 824
TseFI	GTSAC	3 cut(s)	71, 299, 331
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	3 cut(s)	71, 299, 331
TspDTI	ATGAA	2 cut(s)	130, 671
Tth111I	GACNNNGTC	1 cut(s)	235
Van91I	CCANNNNNTGG	1 cut(s)	737
VpaK11BI	GGWCC	1 cut(s)	677
XapI	RAATTY	2 cut(s)	214, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.