Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001055

Physical Location & Seq

Genomic Coordinates Forward (+)

4222832 .. 4225758

Gene Structure 2927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g07090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGTTATGGTTTACTCTGTTGGTCACATCTCTGGTGCCCATTTCAATCCTGCTGTTACTCTGGCTTTCGCTATTATTCATAGGTTCCCATGGAAAGAGATGAGAAAATTTCTGGAATTATATGTACTAGCTAGAAAGCACTTCGACGCTAGCAAATGGCCTTTGGCCCCTTGCTATAGAGAAATGCATTTTCTTCATGCATACACCACTACATCTCTTGTACCCGCTTATATTATTGCTCAAGTCCTTGGATCAACACTCGCAAGCGTTGCTCTAAGGCTTTTATTCCAACACCGTCAAGACCACTTTGCAGGAACAGATCCTAGTGGATCTAATTTGCAGGCGTTCGTGCTTGAGTTCATCATCACATTTTACCTCATGTTTGTTGTTTCTGGTGTGGCCACTGATAGCAGAGCGGTTGGAGAGCTTGCTGGACTTGCAGTTGGCTCCACGGTTCTTCTGAATGTGATGTTTGCAGGGCCAATTACAGGAGCATCAATGAACCCAGCAAGAAGCTTAGGCCCTGCAATTGTCTGGAGCCATTACAAAGGCCTGTGGATTTACCTTGTGTCACCGATTCTTGGAGCATTATGTGGTGCCTTGGTCTACAATGTTATCAGATTTACTGATAAGCCTCTAAATGAGCTCACCAAGACTAGCTCTTTCTTGAAAGGCGTCGACCGCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005215 GO:0005342 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009628 GO:0012505 GO:0012506 GO:0015075 GO:0015103 GO:0015105 GO:0015129 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015700 GO:0015711 GO:0015718 GO:0015727 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031347 GO:0031410 GO:0031982 GO:0034220 GO:0035873 GO:0036293 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046685 GO:0046942 GO:0046943 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0065007 GO:0070482 GO:0071702 GO:0071944 GO:0080134 GO:0080170 GO:0097708 GO:0098588 GO:0098656 GO:0098805 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

230

Amino Acids

25.24

Weight (kDa)

9.42

Isoelectric Point (pI)

25.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	2 - 32	2.8e-08	Major intrinsic protein
MIP	PF00230	70 - 203	4.3e-37	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31885 AT1G31885 AT1G31885 AT2G29870 AT2G34390 AT2G34390 AT2G34390 AT2G34390 AT4G18910 AT4G18910 AT4G19030 AT4G19030 AT4G19030
fragaria_vesca	FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07090 FvH4_6g07990 FvH4_6g08000 FvH4_6g08000 FvH4_6g08000
malus_domestica	MD00G1007200.v1.1 MD10G1273700.v1.1
prunus_persica	Prupe.4G068700_v2.0.a1
pyrus_communis	pycom05g27250 pycom10g22860
rosa_chinensis	RchiOBHm_Chr5g0012031 RchiOBHm_Chr5g0012041 RchiOBHm_Chr6g0279421
rosa_laevigata	RLG00000013147 RLG00000031880 RLG00000031881
rosa_multiflora	Rmu_sc0002519.1_g000006 Rmu_sc0020506.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064540 Rroxscaffold_1G00064560 Rroxscaffold_2G00109780 Rroxscaffold_7G00188910
rosa_rugosa	Rorug02G0319800 Rorug04G0460400 Rorug06G0124200
rosa_samantha	Rh5AG092600 Rh5BG088400 Rh5BG088600 Rh5CG102200 Rh5DG088900 Rh5DG089000 Rh6AG233100 Rh6BG237400 Rh6CG239600 Rh6DG231500
rosa_wichuraiana	Rw2G030270 Rw5G008080 Rw5G008090 Rw6G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	35, 596
AccBSI	CCGCTC	1 cut(s)	416
AccI	GTMKAC	2 cut(s)	606, 678
AciI	CCGC	3 cut(s)	225, 416, 682
AclWI	GGATC	3 cut(s)	259, 314, 337
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	1 cut(s)	107
AcyI	GRCGYC	1 cut(s)	675
AfaI	GTAC	2 cut(s)	126, 222
AfiI	CCNNNNNNNGG	2 cut(s)	488, 581
AgsI	TTSAA	2 cut(s)	46, 670
AluBI	AGCT	5 cut(s)	131, 427, 516, 646, 660
AluI	AGCT	5 cut(s)	131, 427, 516, 646, 660
Alw21I	GWGCWC	1 cut(s)	648
AlwI	GGATC	3 cut(s)	259, 314, 337
AoxI	GGCC	6 cut(s)	158, 165, 399, 479, 520, 550
ApoI	RAATTY	1 cut(s)	107
AspS9I	GGNCC	3 cut(s)	166, 479, 521
AsuHPI	GGTGA	2 cut(s)	564, 640
AsuNHI	GCTAGC	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	401
BanI	GGYRCC	2 cut(s)	35, 596
BanII	GRGCYC	1 cut(s)	648
Bbv12I	GWGCWC	1 cut(s)	648
BfaI	CTAG	5 cut(s)	128, 132, 150, 324, 657
BfmI	CTRYAG	1 cut(s)	175
BmgT120I	GGNCC	3 cut(s)	166, 479, 521
BmiI	GGNNCC	6 cut(s)	37, 86, 168, 448, 539, 598
BmsI	GCATC	1 cut(s)	503
BmtI	GCTAGC	1 cut(s)	153
BpmI	CTGGAG	1 cut(s)	556
Bpu10I	CCTNAGC	1 cut(s)	517
BpuEI	CTTGAG	2 cut(s)	225, 374
BsaHI	GRCGYC	1 cut(s)	675
BsaJI	CCNNGG	4 cut(s)	89, 247, 450, 600
Bsc4I	CCNNNNNNNGG	2 cut(s)	488, 581
BseDI	CCNNGG	4 cut(s)	89, 247, 450, 600
BseLI	CCNNNNNNNGG	2 cut(s)	488, 581
BseSI	GKGCMC	1 cut(s)	40
BseYI	CCCAGC	1 cut(s)	505
Bsh1285I	CGRYCG	1 cut(s)	682
BshFI	GGCC	6 cut(s)	160, 167, 401, 481, 522, 552
BshNI	GGYRCC	2 cut(s)	35, 596
BsiEI	CGRYCG	1 cut(s)	682
BsiHKAI	GWGCWC	1 cut(s)	648
BslI	CCNNNNNNNGG	2 cut(s)	488, 581
BsnI	GGCC	6 cut(s)	160, 167, 401, 481, 522, 552
Bsp1286I	GDGCHC	2 cut(s)	40, 648
Bsp143I	GATC	3 cut(s)	251, 319, 329
Bsp19I	CCATGG	1 cut(s)	89
BspACI	CCGC	3 cut(s)	225, 416, 682
BspANI	GGCC	6 cut(s)	160, 167, 401, 481, 522, 552
BspLI	GGNNCC	6 cut(s)	37, 86, 168, 448, 539, 598
BspOI	GCTAGC	1 cut(s)	153
BspPI	GGATC	3 cut(s)	259, 314, 337
BspT107I	GGYRCC	2 cut(s)	35, 596
BsrBI	CCGCTC	1 cut(s)	416
BssECI	CCNNGG	4 cut(s)	89, 247, 450, 600
BssMI	GATC	3 cut(s)	251, 319, 329
BssNI	GRCGYC	1 cut(s)	675
BssT1I	CCWWGG	3 cut(s)	89, 247, 600
Bst4CI	ACNGT	2 cut(s)	296, 454
BstACI	GRCGYC	1 cut(s)	675
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstC8I	GCNNGC	4 cut(s)	151, 265, 342, 429
BstDEI	CTNAG	2 cut(s)	275, 517
BstDSI	CCRYGG	2 cut(s)	89, 450
BstKTI	GATC	3 cut(s)	254, 322, 332
BstMBI	GATC	3 cut(s)	251, 319, 329
BstMCI	CGRYCG	1 cut(s)	682
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 437, 681
BstSFI	CTRYAG	1 cut(s)	175
BstSLI	GKGCMC	1 cut(s)	40
BstX2I	RGATCY	2 cut(s)	319, 329
BstYI	RGATCY	2 cut(s)	319, 329
BsuRI	GGCC	6 cut(s)	160, 167, 401, 481, 522, 552
BtgI	CCRYGG	2 cut(s)	89, 450
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	4 cut(s)	151, 265, 342, 429
Cfr13I	GGNCC	3 cut(s)	166, 479, 521
CseI	GACGC	2 cut(s)	155, 664
Csp6I	GTAC	2 cut(s)	125, 221
CviAII	CATG	3 cut(s)	90, 197, 379
CviQI	GTAC	2 cut(s)	125, 221
DdeI	CTNAG	2 cut(s)	275, 517
DpnI	GATC	3 cut(s)	253, 321, 331
DpnII	GATC	3 cut(s)	251, 319, 329
EaeI	YGGCCR	1 cut(s)	399
Ecl136II	GAGCTC	1 cut(s)	646
Eco130I	CCWWGG	3 cut(s)	89, 247, 600
Eco147I	AGGCCT	1 cut(s)	552
Eco24I	GRGCYC	1 cut(s)	648
Eco53kI	GAGCTC	1 cut(s)	646
EcoICRI	GAGCTC	1 cut(s)	646
EcoO109I	RGGNCCY	1 cut(s)	521
EcoT14I	CCWWGG	3 cut(s)	89, 247, 600
EcoT22I	ATGCAT	2 cut(s)	189, 202
EcoT38I	GRGCYC	1 cut(s)	648
ErhI	CCWWGG	3 cut(s)	89, 247, 600
FaeI	CATG	3 cut(s)	93, 200, 382
FatI	CATG	3 cut(s)	89, 196, 378
FauI	CCCGC	1 cut(s)	232
FblI	GTMKAC	2 cut(s)	606, 678
FriOI	GRGCYC	1 cut(s)	648
FspBI	CTAG	5 cut(s)	128, 132, 150, 324, 657
GsaI	CCCAGC	1 cut(s)	509
GsuI	CTGGAG	1 cut(s)	556
HaeIII	GGCC	6 cut(s)	160, 167, 401, 481, 522, 552
HgaI	GACGC	2 cut(s)	155, 664
Hin1I	GRCGYC	1 cut(s)	675
Hin1II	CATG	3 cut(s)	93, 200, 382
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HindIII	AAGCTT	1 cut(s)	514
HinfI	GANTC	1 cut(s)	577
HphI	GGTGA	2 cut(s)	564, 640
Hpy166II	GTNNAC	3 cut(s)	13, 607, 679
Hpy188I	TCNGA	2 cut(s)	462, 620
Hpy188III	TCNNGA	4 cut(s)	113, 299, 535, 667
Hpy8I	GTNNAC	3 cut(s)	13, 607, 679
Hpy99I	CGWCG	2 cut(s)	149, 680
HpyCH4III	ACNGT	2 cut(s)	296, 454
HpyCH4V	TGCA	7 cut(s)	187, 200, 311, 340, 440, 476, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 437, 681
HpyF3I	CTNAG	2 cut(s)	275, 517
Hsp92I	GRCGYC	1 cut(s)	675
Hsp92II	CATG	3 cut(s)	93, 200, 382
Kzo9I	GATC	3 cut(s)	251, 319, 329
LmnI	GCTCC	4 cut(s)	452, 491, 537, 584
LweI	GCATC	1 cut(s)	503
MaeI	CTAG	5 cut(s)	128, 132, 150, 324, 657
MaeIII	GTNAC	3 cut(s)	23, 55, 570
MalI	GATC	3 cut(s)	253, 321, 331
MbiI	CCGCTC	1 cut(s)	416
MboI	GATC	3 cut(s)	251, 319, 329
MboII	GAAGA	2 cut(s)	185, 449
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	2 cut(s)	319, 329
MhlI	GDGCHC	2 cut(s)	40, 648
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	5 cut(s)	107, 116, 334, 483, 528
MluNI	TGGCCA	1 cut(s)	401
MmeI	TCCRAC	2 cut(s)	313, 400
MnlI	CCTC	2 cut(s)	386, 645
Mox20I	TGGCCA	1 cut(s)	401
Mph1103I	ATGCAT	2 cut(s)	189, 202
MscI	TGGCCA	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	401
MunI	CAATTG	1 cut(s)	528
MwoI	GCNNNNNNNGC	3 cut(s)	269, 437, 681
NcoI	CCATGG	1 cut(s)	89
NdeII	GATC	3 cut(s)	251, 319, 329
NheI	GCTAGC	1 cut(s)	149
NlaIII	CATG	3 cut(s)	93, 200, 382
NlaIV	GGNNCC	6 cut(s)	37, 86, 168, 448, 539, 598
NmuCI	GTSAC	2 cut(s)	23, 570
NsiI	ATGCAT	2 cut(s)	189, 202
PceI	AGGCCT	1 cut(s)	552
PfeI	GAWTC	1 cut(s)	577
Psp124BI	GAGCTC	1 cut(s)	648
PspFI	CCCAGC	1 cut(s)	505
PspN4I	GGNNCC	6 cut(s)	37, 86, 168, 448, 539, 598
PspPI	GGNCC	3 cut(s)	166, 479, 521
PsuI	RGATCY	2 cut(s)	319, 329
RsaI	GTAC	2 cut(s)	126, 222
RsaNI	GTAC	2 cut(s)	125, 221
SacI	GAGCTC	1 cut(s)	648
SalI	GTCGAC	1 cut(s)	677
Sau3AI	GATC	3 cut(s)	251, 319, 329
Sau96I	GGNCC	3 cut(s)	166, 479, 521
SduI	GDGCHC	2 cut(s)	40, 648
SetI	ASST	9 cut(s)	86, 133, 378, 429, 518, 567, 648, 662, 689
SfaNI	GCATC	1 cut(s)	503
SfcI	CTRYAG	1 cut(s)	175
SmlI	CTYRAG	2 cut(s)	240, 353
SmoI	CTYRAG	2 cut(s)	240, 353
Sse9I	AATT	5 cut(s)	107, 116, 334, 483, 528
SseBI	AGGCCT	1 cut(s)	552
SsiI	CCGC	3 cut(s)	225, 416, 682
SspMI	CTAG	5 cut(s)	128, 132, 150, 324, 657
SstI	GAGCTC	1 cut(s)	648
StuI	AGGCCT	1 cut(s)	552
StyI	CCWWGG	3 cut(s)	89, 247, 600
TaaI	ACNGT	2 cut(s)	296, 454
TaqI	TCGA	2 cut(s)	144, 678
TasI	AATT	5 cut(s)	107, 116, 334, 483, 528
TatI	WGTACW	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	577
TscAI	CASTG	1 cut(s)	409
TseFI	GTSAC	2 cut(s)	23, 570
Tsp45I	GTSAC	2 cut(s)	23, 570
TspDTI	ATGAA	4 cut(s)	68, 185, 349, 515
TspRI	CASTG	1 cut(s)	409
XapI	RAATTY	1 cut(s)	107
XmiI	GTMKAC	2 cut(s)	606, 678
XspI	CTAG	5 cut(s)	128, 132, 150, 324, 657
Zsp2I	ATGCAT	2 cut(s)	189, 202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.