Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001055

Physical Location & Seq

Genomic Coordinates Forward (+)

7826113 .. 7829791

Gene Structure 3679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG088900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCTGAGAATCATGCAAGTGATGGAAACCATGTTCTCAATGTAGAAGATGACAAACCTTCCTCCAAAACCAACCAAGAATCAAGCAGTACCTTGCTCTGTGTACTCTTTTTGCAGAAGGTGATTGCTGAGGTGTTGGGGACATACTTCTTGATATTTGCTGGTTGTGGGGCTGTGGTAGTGAATTTCGACACAGATAAGACGGTGTCCTCTCCGGCGGTTGCAATTGTTTGGGGACTGGTTGTCATGGTGATGATTTACTCTGTTGGTCACATCTCCGGTGCCCACTTCAATCCTGCTGTCACAATTGCTTTTGCTACTACTAAGAGGTTTCCATGGAAACAGGTACTCCCTTATATTGCTGCTCAAGTCCTTGGATCAACGCTCGCAAGTGGTACCCTTAGGCTCATATTTAACCACCGTCAAGACCACTTTGTTGGAACAAGTCCTAGTGGAACTCTGTTGCAGTCTTTCGTGATTGAGTTCATCATCACATTTTACCTCATGTTTGTAGTTTCTGGTGTGGCCACTGATAACAGAGCGATTGGAGAGCTTGCTGGGCTTGCAGTTGGCTCCACGATTCTTCTGAATGTGATGTTTGCAGGGCCAATTACAGGAGCCTCAATGAACCCAGCAAGAAGCTTAGGCCCTGCAATAGTATCAAGCCATTACAAAAACTTGTGGATTTACCTTGTGTCACCAACTCTTGGAGCTGTATGTGGTGCCCTGGTCTACAATGTTATCAGATTTACGGATAAGCCACTGCGGGAGCTCACCAAGAGTGGATCTTTCTTGAAAGGCGCAGGCTGCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005215 GO:0005342 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009628 GO:0012505 GO:0012506 GO:0015075 GO:0015103 GO:0015105 GO:0015129 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015700 GO:0015711 GO:0015718 GO:0015727 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031347 GO:0031410 GO:0031982 GO:0034220 GO:0035873 GO:0036293 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046685 GO:0046942 GO:0046943 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0065007 GO:0070482 GO:0071702 GO:0071944 GO:0080134 GO:0080170 GO:0097708 GO:0098588 GO:0098656 GO:0098805 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

271

Amino Acids

28.91

Weight (kDa)

8.34

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	35 - 245	1.6e-64	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31885 AT1G31885 AT1G31885 AT2G29870 AT2G34390 AT2G34390 AT2G34390 AT2G34390 AT4G18910 AT4G18910 AT4G19030 AT4G19030 AT4G19030
fragaria_vesca	FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07090 FvH4_6g07990 FvH4_6g08000 FvH4_6g08000 FvH4_6g08000
malus_domestica	MD00G1007200.v1.1 MD10G1273700.v1.1
prunus_persica	Prupe.4G068700_v2.0.a1
pyrus_communis	pycom05g27250 pycom10g22860
rosa_chinensis	RchiOBHm_Chr5g0012031 RchiOBHm_Chr5g0012041 RchiOBHm_Chr6g0279421
rosa_laevigata	RLG00000013147 RLG00000031880 RLG00000031881
rosa_multiflora	Rmu_sc0002519.1_g000006 Rmu_sc0020506.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064540 Rroxscaffold_1G00064560 Rroxscaffold_2G00109780 Rroxscaffold_7G00188910
rosa_rugosa	Rorug02G0319800 Rorug04G0460400 Rorug06G0124200
rosa_samantha	Rh5AG092600 Rh5BG088400 Rh5BG088600 Rh5CG102200 Rh5DG088900 Rh5DG089000 Rh6AG233100 Rh6BG237400 Rh6CG239600 Rh6DG231500
rosa_wichuraiana	Rw2G030270 Rw5G008080 Rw5G008090 Rw6G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	395
AccB1I	GGYRCC	3 cut(s)	281, 395, 722
AccB7I	CCANNNNNTGG	1 cut(s)	707
AccI	GTMKAC	1 cut(s)	732
AciI	CCGC	2 cut(s)	218, 766
AclWI	GGATC	2 cut(s)	385, 793
AcoI	YGGCCR	1 cut(s)	525
AcsI	RAATTY	1 cut(s)	184
AfaI	GTAC	4 cut(s)	91, 105, 348, 397
AfiI	CCNNNNNNNGG	2 cut(s)	614, 707
AgsI	TTSAA	2 cut(s)	292, 796
AhdI	GACNNNNNGTC	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	726
AloI	GAACNNNNNNTCC	2 cut(s)	18, 50
AluBI	AGCT	4 cut(s)	553, 642, 713, 772
AluI	AGCT	4 cut(s)	553, 642, 713, 772
Alw21I	GWGCWC	1 cut(s)	774
AlwI	GGATC	2 cut(s)	385, 793
AoxI	GGCC	3 cut(s)	525, 605, 646
ApeKI	GCWGC	2 cut(s)	362, 807
ApoI	RAATTY	1 cut(s)	184
Asp718I	GGTACC	1 cut(s)	395
AspLEI	GCGC	1 cut(s)	803
AspS9I	GGNCC	2 cut(s)	605, 647
AsuHPI	GGTGA	4 cut(s)	133, 262, 690, 766
AxyI	CCTNAGG	1 cut(s)	401
BaeGI	GKGCMC	2 cut(s)	286, 727
BalI	TGGCCA	1 cut(s)	527
BanI	GGYRCC	3 cut(s)	281, 395, 722
BanII	GRGCYC	1 cut(s)	774
Bbv12I	GWGCWC	1 cut(s)	774
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	349, 794
BccI	CCATC	1 cut(s)	17
BciT130I	CCWGG	1 cut(s)	728
BfaI	CTAG	1 cut(s)	450
BisI	GCNGC	2 cut(s)	363, 808
BlsI	GCNGC	2 cut(s)	364, 809
Bme1390I	CCNGG	1 cut(s)	728
BmeRI	GACNNNNNGTC	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	605, 647
BmiI	GGNNCC	5 cut(s)	283, 397, 574, 619, 724
BmrFI	CCNGG	1 cut(s)	728
Bpu10I	CCTNAGC	2 cut(s)	129, 643
BpuEI	CTTGAG	1 cut(s)	351
BsaJI	CCNNGG	3 cut(s)	335, 373, 726
BsaWI	WCCGGW	1 cut(s)	278
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	2 cut(s)	614, 707
Bse1I	ACTGG	1 cut(s)	243
Bse21I	CCTNAGG	1 cut(s)	401
BseBI	CCWGG	1 cut(s)	728
BseDI	CCNNGG	3 cut(s)	335, 373, 726
BseLI	CCNNNNNNNGG	2 cut(s)	614, 707
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	243
BseSI	GKGCMC	2 cut(s)	286, 727
BseXI	GCAGC	2 cut(s)	349, 794
BseYI	CCCAGC	2 cut(s)	557, 631
BsgI	GTGCAG	1 cut(s)	793
BshFI	GGCC	3 cut(s)	527, 607, 648
BshNI	GGYRCC	3 cut(s)	281, 395, 722
BsiHKAI	GWGCWC	1 cut(s)	774
BsiSI	CCGG	2 cut(s)	215, 279
BslFI	GGGAC	2 cut(s)	154, 249
BslI	CCNNNNNNNGG	2 cut(s)	614, 707
BsmFI	GGGAC	2 cut(s)	154, 249
BsnI	GGCC	3 cut(s)	527, 607, 648
Bsp1286I	GDGCHC	3 cut(s)	286, 727, 774
Bsp143I	GATC	2 cut(s)	377, 785
Bsp19I	CCATGG	1 cut(s)	335
BspACI	CCGC	2 cut(s)	218, 766
BspANI	GGCC	3 cut(s)	527, 607, 648
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	5 cut(s)	283, 397, 574, 619, 724
BspPI	GGATC	2 cut(s)	385, 793
BspT107I	GGYRCC	3 cut(s)	281, 395, 722
BsrI	ACTGG	1 cut(s)	243
BssECI	CCNNGG	3 cut(s)	335, 373, 726
BssMI	GATC	2 cut(s)	377, 785
BssT1I	CCWWGG	2 cut(s)	335, 373
Bst2UI	CCWGG	1 cut(s)	728
Bst4CI	ACNGT	2 cut(s)	205, 422
BstC8I	GCNNGC	4 cut(s)	387, 555, 564, 805
BstDEI	CTNAG	5 cut(s)	6, 129, 324, 401, 643
BstDSI	CCRYGG	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	803
BstKTI	GATC	2 cut(s)	380, 788
BstMBI	GATC	2 cut(s)	377, 785
BstMWI	GCNNNNNNNGC	3 cut(s)	559, 563, 807
BstNI	CCWGG	1 cut(s)	728
BstSCI	CCNGG	1 cut(s)	726
BstSLI	GKGCMC	2 cut(s)	286, 727
BstV1I	GCAGC	2 cut(s)	349, 794
BstX2I	RGATCY	1 cut(s)	785
BstXI	CCANNNNNNTGG	1 cut(s)	437
BstYI	RGATCY	1 cut(s)	785
Bsu36I	CCTNAGG	1 cut(s)	401
BsuRI	GGCC	3 cut(s)	527, 607, 648
BtgI	CCRYGG	1 cut(s)	335
BtsI	GCAGTG	1 cut(s)	761
BtsIMutI	CAGTG	2 cut(s)	528, 761
Cac8I	GCNNGC	4 cut(s)	387, 555, 564, 805
CfoI	GCGC	1 cut(s)	803
Cfr13I	GGNCC	2 cut(s)	605, 647
Csp6I	GTAC	4 cut(s)	90, 104, 347, 396
CviAII	CATG	5 cut(s)	14, 32, 247, 336, 505
CviQI	GTAC	4 cut(s)	90, 104, 347, 396
DdeI	CTNAG	5 cut(s)	6, 129, 324, 401, 643
DpnI	GATC	2 cut(s)	379, 787
DpnII	GATC	2 cut(s)	377, 785
DriI	GACNNNNNGTC	1 cut(s)	242
EaeI	YGGCCR	1 cut(s)	525
Eam1105I	GACNNNNNGTC	1 cut(s)	242
Ecl136II	GAGCTC	1 cut(s)	772
Eco130I	CCWWGG	2 cut(s)	335, 373
Eco24I	GRGCYC	1 cut(s)	774
Eco53kI	GAGCTC	1 cut(s)	772
Eco81I	CCTNAGG	1 cut(s)	401
EcoICRI	GAGCTC	1 cut(s)	772
EcoO109I	RGGNCCY	1 cut(s)	647
EcoRII	CCWGG	1 cut(s)	726
EcoT14I	CCWWGG	2 cut(s)	335, 373
EcoT38I	GRGCYC	1 cut(s)	774
ErhI	CCWWGG	2 cut(s)	335, 373
FaeI	CATG	5 cut(s)	17, 35, 250, 339, 508
FaiI	YATR	9 cut(s)	15, 33, 145, 248, 337, 357, 410, 506, 718
FaqI	GGGAC	2 cut(s)	154, 249
FatI	CATG	5 cut(s)	13, 31, 246, 335, 504
FauI	CCCGC	1 cut(s)	759
FblI	GTMKAC	1 cut(s)	732
Fnu4HI	GCNGC	2 cut(s)	363, 808
FriOI	GRGCYC	1 cut(s)	774
Fsp4HI	GCNGC	2 cut(s)	363, 808
FspBI	CTAG	1 cut(s)	450
GlaI	GCGC	1 cut(s)	802
GluI	GCNGC	2 cut(s)	363, 808
GsaI	CCCAGC	2 cut(s)	561, 635
HaeIII	GGCC	3 cut(s)	527, 607, 648
HapII	CCGG	2 cut(s)	215, 279
HhaI	GCGC	1 cut(s)	803
Hin1II	CATG	5 cut(s)	17, 35, 250, 339, 508
Hin6I	GCGC	1 cut(s)	801
HinP1I	GCGC	1 cut(s)	801
HindIII	AAGCTT	1 cut(s)	640
HinfI	GANTC	3 cut(s)	10, 80, 580
HpaII	CCGG	2 cut(s)	215, 279
HphI	GGTGA	4 cut(s)	133, 262, 690, 766
Hpy166II	GTNNAC	2 cut(s)	104, 733
Hpy188I	TCNGA	2 cut(s)	588, 746
Hpy188III	TCNNGA	4 cut(s)	151, 425, 475, 793
Hpy8I	GTNNAC	2 cut(s)	104, 733
HpyAV	CCTTC	2 cut(s)	69, 112
HpyCH4III	ACNGT	2 cut(s)	205, 422
HpyCH4V	TGCA	8 cut(s)	17, 115, 224, 466, 566, 602, 653, 810
HpyF10VI	GCNNNNNNNGC	3 cut(s)	559, 563, 807
HpyF3I	CTNAG	5 cut(s)	6, 129, 324, 401, 643
Hsp92II	CATG	5 cut(s)	17, 35, 250, 339, 508
HspAI	GCGC	1 cut(s)	801
KpnI	GGTACC	1 cut(s)	399
Kzo9I	GATC	2 cut(s)	377, 785
LmnI	GCTCC	4 cut(s)	578, 617, 710, 769
Lsp1109I	GCAGC	2 cut(s)	349, 794
MaeI	CTAG	1 cut(s)	450
MaeIII	GTNAC	3 cut(s)	269, 301, 696
MalI	GATC	2 cut(s)	379, 787
MboI	GATC	2 cut(s)	377, 785
MboII	GAAGA	2 cut(s)	59, 575
MfeI	CAATTG	2 cut(s)	225, 306
MflI	RGATCY	1 cut(s)	785
MhlI	GDGCHC	3 cut(s)	286, 727, 774
MlsI	TGGCCA	1 cut(s)	527
MluCI	AATT	4 cut(s)	184, 225, 306, 609
MluNI	TGGCCA	1 cut(s)	527
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	6 cut(s)	73, 124, 220, 321, 512, 631
Mox20I	TGGCCA	1 cut(s)	527
MscI	TGGCCA	1 cut(s)	527
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	2 cut(s)	18, 251
Msp20I	TGGCCA	1 cut(s)	527
MspI	CCGG	2 cut(s)	215, 279
MspR9I	CCNGG	1 cut(s)	728
MunI	CAATTG	2 cut(s)	225, 306
MvaI	CCWGG	1 cut(s)	728
MwoI	GCNNNNNNNGC	3 cut(s)	559, 563, 807
NcoI	CCATGG	1 cut(s)	335
NdeII	GATC	2 cut(s)	377, 785
NlaIII	CATG	5 cut(s)	17, 35, 250, 339, 508
NlaIV	GGNNCC	5 cut(s)	283, 397, 574, 619, 724
NmuCI	GTSAC	3 cut(s)	269, 301, 696
PfeI	GAWTC	3 cut(s)	10, 80, 580
PflFI	GACNNNGTC	1 cut(s)	205
PflMI	CCANNNNNTGG	1 cut(s)	707
PkrI	GCNGC	2 cut(s)	364, 809
Psp124BI	GAGCTC	1 cut(s)	774
Psp6I	CCWGG	1 cut(s)	726
PspFI	CCCAGC	2 cut(s)	557, 631
PspGI	CCWGG	1 cut(s)	726
PspN4I	GGNNCC	5 cut(s)	283, 397, 574, 619, 724
PspPI	GGNCC	2 cut(s)	605, 647
PsuI	RGATCY	1 cut(s)	785
PsyI	GACNNNGTC	1 cut(s)	205
RsaI	GTAC	4 cut(s)	91, 105, 348, 397
RsaNI	GTAC	4 cut(s)	90, 104, 347, 396
RseI	CAYNNNNRTG	2 cut(s)	18, 251
SacI	GAGCTC	1 cut(s)	774
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	2 cut(s)	363, 808
Sau3AI	GATC	2 cut(s)	377, 785
Sau96I	GGNCC	2 cut(s)	605, 647
ScrFI	CCNGG	1 cut(s)	728
SduI	GDGCHC	3 cut(s)	286, 727, 774
SmiMI	CAYNNNNRTG	2 cut(s)	18, 251
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
Sse9I	AATT	4 cut(s)	184, 225, 306, 609
SsiI	CCGC	2 cut(s)	218, 766
SspMI	CTAG	1 cut(s)	450
SstI	GAGCTC	1 cut(s)	774
StyD4I	CCNGG	1 cut(s)	726
StyI	CCWWGG	2 cut(s)	335, 373
TaaI	ACNGT	2 cut(s)	205, 422
TaqI	TCGA	1 cut(s)	189
TasI	AATT	4 cut(s)	184, 225, 306, 609
TatI	WGTACW	1 cut(s)	103
TfiI	GAWTC	3 cut(s)	10, 80, 580
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	2 cut(s)	535, 768
TseFI	GTSAC	3 cut(s)	269, 301, 696
TseI	GCWGC	2 cut(s)	362, 807
Tsp45I	GTSAC	3 cut(s)	269, 301, 696
TspDTI	ATGAA	2 cut(s)	475, 641
TspGWI	ACGGA	1 cut(s)	767
TspRI	CASTG	2 cut(s)	535, 768
Tth111I	GACNNNGTC	1 cut(s)	205
Van91I	CCANNNNNTGG	1 cut(s)	707
XapI	RAATTY	1 cut(s)	184
XmiI	GTMKAC	1 cut(s)	732
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.