Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001055

Physical Location & Seq

Genomic Coordinates Forward (+)

10366044 .. 10368510

Gene Structure 2467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCGGAGATCTCGGGAAACGGTGGTGATGCTAGAGACGGAGCTGTGGTGGTCAATCTCAAGGAAGAAGACGAACAACAACAACAACAACAAGCTATTCATAAACCCTTGAAGAAACAAGACTCTCTCCTCTCTATCTCTGTCCCTTTCTTACAAAAGTTGATGGCGGAGGTTTTGGGAACATACTTCTTGATATTCGCCGGTTGTGCCGCGGTGGCTGTAAACACACAACATGACAAAGCCGTGACTCTTCCAGGGATCGCCATCGTTTGGGGACTTACCGTCATGGTCCTTGTTTACTCTCTCGGTCACATCTCCGGTGCTCATTTCAATCCGGCCGTCACAATCGCATTCGCTTCTTGCGGCCGTTTCCCTCTTAAACAGGTTCCGGCTTATGTGATATCACAAGTGATCGGATCAACGCTAGCGGCGGCGACTTTACGGCTCTTGTTCGGACTTGATCAAGATGTTTGTAGTGGGAAACACGATGTGTTCGTCGGAACATTACCATCTGGATCGAATTTGCAGTCGTTTGTGATCGAGTTTATCATTACTTTCTACCTAATGTTCGTTATTTCTGGCGTTGCCACCGATAATAGAGCGATCGGAGAACTTGCTGGACTAGCAGTAGGATCAACAGTGCTACTTAACGTGATAATTGCCGGGCCGGTATCGGGAGCATCGATGAATCCAGGACGAAGTTTAGGACCTGCAATGGTCTACAGTTGCTACAGAGGACTTTGGATCTACATAGTTTCTCCAATTGTTGGTGCAGTTTCGGGTGCGTGGGTTTATAACATGGTTCGATATACTGATAAGCCATTACGAGAAATAACTAAAAGCGGTTCTTTTTTAAAGACAGTGCGAAACGGTAGCTCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005215 GO:0005342 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009628 GO:0012505 GO:0012506 GO:0015075 GO:0015103 GO:0015105 GO:0015129 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015700 GO:0015711 GO:0015718 GO:0015727 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031347 GO:0031410 GO:0031982 GO:0034220 GO:0035873 GO:0036293 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046685 GO:0046942 GO:0046943 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0065007 GO:0070482 GO:0071702 GO:0071944 GO:0080134 GO:0080170 GO:0097708 GO:0098588 GO:0098656 GO:0098805 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

294

Amino Acids

31.27

Weight (kDa)

8.63

Isoelectric Point (pI)

34.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	47 - 221	1.8e-43	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31885 AT1G31885 AT1G31885 AT2G29870 AT2G34390 AT2G34390 AT2G34390 AT2G34390 AT4G18910 AT4G18910 AT4G19030 AT4G19030 AT4G19030
fragaria_vesca	FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07090 FvH4_6g07990 FvH4_6g08000 FvH4_6g08000 FvH4_6g08000
malus_domestica	MD00G1007200.v1.1 MD10G1273700.v1.1
prunus_persica	Prupe.4G068700_v2.0.a1
pyrus_communis	pycom05g27250 pycom10g22860
rosa_chinensis	RchiOBHm_Chr5g0012031 RchiOBHm_Chr5g0012041 RchiOBHm_Chr6g0279421
rosa_laevigata	RLG00000013147 RLG00000031880 RLG00000031881
rosa_multiflora	Rmu_sc0002519.1_g000006 Rmu_sc0020506.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064540 Rroxscaffold_1G00064560 Rroxscaffold_2G00109780 Rroxscaffold_7G00188910
rosa_rugosa	Rorug02G0319800 Rorug04G0460400 Rorug06G0124200
rosa_samantha	Rh5AG092600 Rh5BG088400 Rh5BG088600 Rh5CG102200 Rh5DG088900 Rh5DG089000 Rh6AG233100 Rh6BG237400 Rh6CG239600 Rh6DG231500
rosa_wichuraiana	Rw2G030270 Rw5G008080 Rw5G008090 Rw6G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	795
Acc36I	ACCTGC	1 cut(s)	718
AccB7I	CCANNNNNTGG	2 cut(s)	270, 767
AccI	GTMKAC	1 cut(s)	720
AccII	CGCG	1 cut(s)	212
AciI	CCGC	8 cut(s)	5, 167, 210, 212, 363, 428, 431, 843
AclWI	GGATC	5 cut(s)	266, 424, 523, 640, 752
AcoI	YGGCCR	2 cut(s)	336, 364
AcsI	RAATTY	1 cut(s)	520
AdeI	CACNNNGTG	1 cut(s)	490
AfiI	CCNNNNNNNGG	3 cut(s)	270, 674, 767
AgsI	TTSAA	2 cut(s)	112, 331
AhdI	GACNNNNNGTC	1 cut(s)	281
AjnI	CCWGG	2 cut(s)	253, 691
AluBI	AGCT	3 cut(s)	44, 95, 876
AluI	AGCT	3 cut(s)	44, 95, 876
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	5 cut(s)	266, 424, 523, 640, 752
Ama87I	CYCGRG	1 cut(s)	13
AoxI	GGCC	3 cut(s)	336, 364, 665
ApoI	RAATTY	1 cut(s)	520
ArsI	GACNNNNNNTTYG	2 cut(s)	512, 544
AspS9I	GGNCC	3 cut(s)	289, 665, 707
AsuC2I	CCSGG	1 cut(s)	664
AsuHPI	GGTGA	1 cut(s)	38
AsuNHI	GCTAGC	1 cut(s)	424
AvaI	CYCGRG	1 cut(s)	13
AvaII	GGWCC	2 cut(s)	289, 707
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	325
BccI	CCATC	3 cut(s)	157, 272, 517
BceAI	ACGGC	4 cut(s)	227, 323, 351, 458
BciT130I	CCWGG	2 cut(s)	255, 693
BclI	TGATCA	1 cut(s)	460
BcnI	CCSGG	1 cut(s)	664
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	3 cut(s)	33, 425, 623
BfmI	CTRYAG	2 cut(s)	721, 730
BfuAI	ACCTGC	1 cut(s)	718
BglI	GCCNNNNNGGC	1 cut(s)	215
BglII	AGATCT	1 cut(s)	9
BisI	GCNGC	4 cut(s)	210, 364, 429, 432
BlsI	GCNGC	4 cut(s)	211, 365, 430, 433
Bme1390I	CCNGG	3 cut(s)	255, 664, 693
Bme18I	GGWCC	2 cut(s)	289, 707
BmeRI	GACNNNNNGTC	1 cut(s)	281
BmeT110I	CYCGRG	1 cut(s)	13
BmgT120I	GGNCC	3 cut(s)	289, 665, 707
BmiI	GGNNCC	1 cut(s)	387
BmrFI	CCNGG	3 cut(s)	255, 664, 693
BmsI	GCATC	2 cut(s)	19, 689
BmtI	GCTAGC	1 cut(s)	428
BpiI	GAAGAC	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	664
Bsa29I	ATCGAT	1 cut(s)	683
BsaBI	GATNNNNATC	1 cut(s)	263
BsaJI	CCNNGG	2 cut(s)	210, 254
BsaWI	WCCGGW	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	3 cut(s)	270, 674, 767
Bse118I	RCCGGY	2 cut(s)	200, 667
Bse3DI	GCAATG	1 cut(s)	720
Bse8I	GATNNNNATC	1 cut(s)	263
BseBI	CCWGG	2 cut(s)	255, 693
BseCI	ATCGAT	1 cut(s)	683
BseDI	CCNNGG	2 cut(s)	210, 254
BseJI	GATNNNNATC	1 cut(s)	263
BseLI	CCNNNNNNNGG	3 cut(s)	270, 674, 767
BseMI	GCAATG	1 cut(s)	720
BseRI	GAGGAG	1 cut(s)	119
BseX3I	CGGCCG	2 cut(s)	336, 364
BsgI	GTGCAG	1 cut(s)	792
Bsh1236I	CGCG	1 cut(s)	212
Bsh1285I	CGRYCG	3 cut(s)	339, 367, 606
BshFI	GGCC	3 cut(s)	338, 366, 667
BshVI	ATCGAT	1 cut(s)	683
BsiEI	CGRYCG	3 cut(s)	339, 367, 606
BsiHKAI	GWGCWC	1 cut(s)	325
BsiHKCI	CYCGRG	1 cut(s)	13
BsiSI	CCGG	6 cut(s)	201, 318, 335, 389, 663, 668
BslFI	GGGAC	2 cut(s)	128, 288
BslI	CCNNNNNNNGG	3 cut(s)	270, 674, 767
BsmAI	GTCTC	1 cut(s)	30
BsmBI	CGTCTC	1 cut(s)	30
BsmFI	GGGAC	2 cut(s)	128, 288
BsmI	GAATGC	1 cut(s)	350
BsnI	GGCC	3 cut(s)	338, 366, 667
BsoBI	CYCGRG	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	325
BspACI	CCGC	8 cut(s)	5, 167, 210, 212, 363, 428, 431, 843
BspANI	GGCC	3 cut(s)	338, 366, 667
BspDI	ATCGAT	1 cut(s)	683
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	1 cut(s)	387
BspMI	ACCTGC	1 cut(s)	718
BspOI	GCTAGC	1 cut(s)	428
BspPI	GGATC	5 cut(s)	266, 424, 523, 640, 752
BsrDI	GCAATG	1 cut(s)	720
BsrFI	RCCGGY	2 cut(s)	200, 667
BssAI	RCCGGY	2 cut(s)	200, 667
BssECI	CCNNGG	2 cut(s)	210, 254
Bst2UI	CCWGG	2 cut(s)	255, 693
Bst4CI	ACNGT	6 cut(s)	23, 283, 640, 725, 862, 872
Bst6I	CTCTTC	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	426
BstDSI	CCRYGG	1 cut(s)	210
BstFNI	CGCG	1 cut(s)	212
BstMAI	GTCTC	1 cut(s)	30
BstMCI	CGRYCG	3 cut(s)	339, 367, 606
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 215, 623
BstNI	CCWGG	2 cut(s)	255, 693
BstSCI	CCNGG	3 cut(s)	253, 662, 691
BstSFI	CTRYAG	2 cut(s)	721, 730
BstUI	CGCG	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	2 cut(s)	9, 744
BstYI	RGATCY	2 cut(s)	9, 744
BstZI	CGGCCG	2 cut(s)	336, 364
Bsu15I	ATCGAT	1 cut(s)	683
BsuRI	GGCC	3 cut(s)	338, 366, 667
BsuTUI	ATCGAT	1 cut(s)	683
BtgI	CCRYGG	1 cut(s)	210
BtsIMutI	CAGTG	2 cut(s)	645, 867
BveI	ACCTGC	1 cut(s)	718
Cac8I	GCNNGC	1 cut(s)	426
Cfr10I	RCCGGY	2 cut(s)	200, 667
Cfr13I	GGNCC	3 cut(s)	289, 665, 707
Cfr42I	CCGCGG	1 cut(s)	213
ClaI	ATCGAT	1 cut(s)	683
CviAII	CATG	3 cut(s)	233, 286, 799
DraI	TTTAAA	1 cut(s)	855
DraIII	CACNNNGTG	1 cut(s)	490
DriI	GACNNNNNGTC	1 cut(s)	281
EaeI	YGGCCR	2 cut(s)	336, 364
EagI	CGGCCG	2 cut(s)	336, 364
Eam1104I	CTCTTC	1 cut(s)	255
Eam1105I	GACNNNNNGTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	255
EciI	GGCGGA	2 cut(s)	20, 182
EclXI	CGGCCG	2 cut(s)	336, 364
Eco32I	GATATC	1 cut(s)	402
Eco47I	GGWCC	2 cut(s)	289, 707
Eco52I	CGGCCG	2 cut(s)	336, 364
Eco88I	CYCGRG	1 cut(s)	13
EcoO109I	RGGNCCY	1 cut(s)	707
EcoRII	CCWGG	2 cut(s)	253, 691
EcoRV	GATATC	1 cut(s)	402
Esp3I	CGTCTC	1 cut(s)	30
FaeI	CATG	3 cut(s)	236, 289, 802
FaiI	YATR	9 cut(s)	102, 184, 234, 287, 396, 752, 795, 800, 810
FalI	AAGNNNNNCTT	2 cut(s)	832, 864
FaqI	GGGAC	2 cut(s)	128, 288
FatI	CATG	3 cut(s)	232, 285, 798
FbaI	TGATCA	1 cut(s)	460
FblI	GTMKAC	1 cut(s)	720
Fnu4HI	GCNGC	4 cut(s)	210, 364, 429, 432
Fsp4HI	GCNGC	4 cut(s)	210, 364, 429, 432
FspBI	CTAG	3 cut(s)	33, 425, 623
GluI	GCNGC	4 cut(s)	210, 364, 429, 432
HaeIII	GGCC	3 cut(s)	338, 366, 667
HapII	CCGG	6 cut(s)	201, 318, 335, 389, 663, 668
Hin1II	CATG	3 cut(s)	236, 289, 802
HinfI	GANTC	3 cut(s)	122, 247, 688
HpaII	CCGG	6 cut(s)	201, 318, 335, 389, 663, 668
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	3 cut(s)	223, 298, 721
Hpy188I	TCNGA	4 cut(s)	416, 455, 500, 608
Hpy188III	TCNNGA	5 cut(s)	15, 190, 464, 513, 675
Hpy8I	GTNNAC	3 cut(s)	223, 298, 721
Hpy99I	CGWCG	1 cut(s)	500
HpyCH4III	ACNGT	6 cut(s)	23, 283, 640, 725, 862, 872
HpyCH4IV	ACGT	1 cut(s)	651
HpyCH4V	TGCA	3 cut(s)	526, 713, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 215, 623
HpySE526I	ACGT	1 cut(s)	651
Hsp92II	CATG	3 cut(s)	236, 289, 802
Ksp22I	TGATCA	1 cut(s)	460
KspI	CCGCGG	1 cut(s)	213
LmnI	GCTCC	2 cut(s)	41, 677
LweI	GCATC	2 cut(s)	19, 689
MaeI	CTAG	3 cut(s)	33, 425, 623
MaeII	ACGT	1 cut(s)	651
MaeIII	GTNAC	3 cut(s)	244, 308, 340
MboII	GAAGA	4 cut(s)	77, 80, 124, 242
MfeI	CAATTG	1 cut(s)	762
MflI	RGATCY	2 cut(s)	9, 744
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	3 cut(s)	520, 657, 762
MlyI	GAGTC	2 cut(s)	116, 241
MmeI	TCCRAC	1 cut(s)	478
MnlI	CCTC	4 cut(s)	140, 163, 384, 728
MseI	TTAA	4 cut(s)	378, 648, 854, 883
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	6 cut(s)	201, 318, 335, 389, 663, 668
MspR9I	CCNGG	3 cut(s)	255, 664, 693
MunI	CAATTG	1 cut(s)	762
Mva1269I	GAATGC	1 cut(s)	350
MvaI	CCWGG	2 cut(s)	255, 693
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	3 cut(s)	206, 215, 623
NciI	CCSGG	1 cut(s)	664
NheI	GCTAGC	1 cut(s)	424
NlaIII	CATG	3 cut(s)	236, 289, 802
NlaIV	GGNNCC	1 cut(s)	387
NmuCI	GTSAC	3 cut(s)	244, 308, 340
PcsI	WCGNNNNNNNCGW	2 cut(s)	492, 680
PctI	GAATGC	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	688
PflMI	CCANNNNNTGG	2 cut(s)	270, 767
PfoI	TCCNGGA	1 cut(s)	691
PkrI	GCNGC	4 cut(s)	211, 365, 430, 433
Ple19I	CGATCG	1 cut(s)	606
PleI	GAGTC	2 cut(s)	116, 241
PpsI	GAGTC	2 cut(s)	116, 241
PpuMI	RGGWCCY	1 cut(s)	707
PsiI	TTATAA	1 cut(s)	795
Psp5II	RGGWCCY	1 cut(s)	707
Psp6I	CCWGG	2 cut(s)	253, 691
PspGI	CCWGG	2 cut(s)	253, 691
PspN4I	GGNNCC	1 cut(s)	387
PspPI	GGNCC	3 cut(s)	289, 665, 707
PspPPI	RGGWCCY	1 cut(s)	707
PsuI	RGATCY	2 cut(s)	9, 744
PvuI	CGATCG	1 cut(s)	606
SacII	CCGCGG	1 cut(s)	213
SaqAI	TTAA	4 cut(s)	378, 648, 854, 883
SatI	GCNGC	4 cut(s)	210, 364, 429, 432
Sau96I	GGNCC	3 cut(s)	289, 665, 707
SchI	GAGTC	2 cut(s)	116, 241
ScrFI	CCNGG	3 cut(s)	255, 664, 693
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	8 cut(s)	46, 97, 174, 387, 564, 654, 712, 878
SfaNI	GCATC	2 cut(s)	19, 689
SfcI	CTRYAG	2 cut(s)	721, 730
Sfr303I	CCGCGG	1 cut(s)	213
SgrBI	CCGCGG	1 cut(s)	213
SinI	GGWCC	2 cut(s)	289, 707
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	3 cut(s)	520, 657, 762
SsiI	CCGC	8 cut(s)	5, 167, 210, 212, 363, 428, 431, 843
SspMI	CTAG	3 cut(s)	33, 425, 623
StyD4I	CCNGG	3 cut(s)	253, 662, 691
TaaI	ACNGT	6 cut(s)	23, 283, 640, 725, 862, 872
TaiI	ACGT	1 cut(s)	654
TaqI	TCGA	4 cut(s)	518, 540, 683, 805
TaqII	GACCGA	1 cut(s)	296
TasI	AATT	3 cut(s)	520, 657, 762
TauI	GCSGC	4 cut(s)	212, 366, 431, 434
TfiI	GAWTC	1 cut(s)	688
Tru1I	TTAA	4 cut(s)	378, 648, 854, 883
Tru9I	TTAA	4 cut(s)	378, 648, 854, 883
TscAI	CASTG	2 cut(s)	645, 867
TseFI	GTSAC	3 cut(s)	244, 308, 340
Tsp45I	GTSAC	3 cut(s)	244, 308, 340
TspDTI	ATGAA	2 cut(s)	89, 701
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	2 cut(s)	645, 867
Van91I	CCANNNNNTGG	2 cut(s)	270, 767
VpaK11BI	GGWCC	2 cut(s)	289, 707
XapI	RAATTY	1 cut(s)	520
XmiI	GTMKAC	1 cut(s)	720
XspI	CTAG	3 cut(s)	33, 425, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.