Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001055

Physical Location & Seq

Genomic Coordinates Forward (+)

12740989 .. 12741791

Gene Structure 803 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G29870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGATGTGTGCAGCAAGAAACACGATGTCTTCCTCGGGGTCATCTCCTTCTGGGTCTGATCTTCAAGCATTCGTGATGGAGTTCATCATTACCGGCTTCCTCATGTTAGTCGTCTGTGCCGTCACAACCACCAAGAGAACTACAGAGGAACTAGAGGGGCTAATCATTGGGGCAACCGTCACACTGAATGTTATCTTTGTTGGAGAGGTATCAGGAGCATCGATGAATCCAGCAAGAAGCATAGGACCTGCACTTGTGTGGGGATGTTACAAAGGGATTTGGATATACTTGCTGGCTCCAACACTTGGTGCCGTCTCTCGGGCCTTGATTCATAAAATGTTACCGTCAATACCAAACGCAGAGCCTAAGTTCTCCAAGACAGGATCTTCTCATAAACGAGTTTCCGATCTTCCTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005215 GO:0005342 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009628 GO:0012505 GO:0012506 GO:0015075 GO:0015103 GO:0015105 GO:0015129 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015700 GO:0015711 GO:0015718 GO:0015727 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031347 GO:0031410 GO:0031982 GO:0034220 GO:0035873 GO:0036293 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046685 GO:0046942 GO:0046943 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0065007 GO:0070482 GO:0071702 GO:0071944 GO:0080134 GO:0080170 GO:0097708 GO:0098588 GO:0098656 GO:0098805 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

139

Amino Acids

14.72

Weight (kDa)

8.93

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	6 - 111	1.1e-26	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31885 AT1G31885 AT1G31885 AT2G29870 AT2G34390 AT2G34390 AT2G34390 AT2G34390 AT4G18910 AT4G18910 AT4G19030 AT4G19030 AT4G19030
fragaria_vesca	FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07090 FvH4_6g07990 FvH4_6g08000 FvH4_6g08000 FvH4_6g08000
malus_domestica	MD00G1007200.v1.1 MD10G1273700.v1.1
prunus_persica	Prupe.4G068700_v2.0.a1
pyrus_communis	pycom05g27250 pycom10g22860
rosa_chinensis	RchiOBHm_Chr5g0012031 RchiOBHm_Chr5g0012041 RchiOBHm_Chr6g0279421
rosa_laevigata	RLG00000013147 RLG00000031880 RLG00000031881
rosa_multiflora	Rmu_sc0002519.1_g000006 Rmu_sc0020506.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064540 Rroxscaffold_1G00064560 Rroxscaffold_2G00109780 Rroxscaffold_7G00188910
rosa_rugosa	Rorug02G0319800 Rorug04G0460400 Rorug06G0124200
rosa_samantha	Rh5AG092600 Rh5BG088400 Rh5BG088600 Rh5CG102200 Rh5DG088900 Rh5DG089000 Rh6AG233100 Rh6BG237400 Rh6CG239600 Rh6DG231500
rosa_wichuraiana	Rw2G030270 Rw5G008080 Rw5G008090 Rw6G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
AccB1I	GGYRCC	1 cut(s)	308
AccB7I	CCANNNNNTGG	1 cut(s)	305
AclWI	GGATC	1 cut(s)	391
AdeI	CACNNNGTG	1 cut(s)	308
AfiI	CCNNNNNNNGG	2 cut(s)	305, 318
AgsI	TTSAA	1 cut(s)	65
AleI	CACNNNNGTG	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	1 cut(s)	391
Ama87I	CYCGRG	2 cut(s)	34, 318
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	11
AspS9I	GGNCC	2 cut(s)	245, 321
AvaI	CYCGRG	2 cut(s)	34, 318
AvaII	GGWCC	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	2 cut(s)	104, 296
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	1 cut(s)	152
BfmI	CTRYAG	1 cut(s)	141
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme18I	GGWCC	1 cut(s)	245
BmeT110I	CYCGRG	2 cut(s)	34, 318
BmgT120I	GGNCC	2 cut(s)	245, 321
BmiI	GGNNCC	2 cut(s)	297, 310
BmsI	GCATC	1 cut(s)	227
BpiI	GAAGAC	1 cut(s)	21
Bsa29I	ATCGAT	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 318
Bse118I	RCCGGY	1 cut(s)	92
BseCI	ATCGAT	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	269
BseLI	CCNNNNNNNGG	2 cut(s)	305, 318
BseXI	GCAGC	1 cut(s)	23
BsgI	GTGCAG	2 cut(s)	30, 234
BshFI	GGCC	1 cut(s)	323
BshNI	GGYRCC	1 cut(s)	308
BshVI	ATCGAT	1 cut(s)	221
BsiHKCI	CYCGRG	2 cut(s)	34, 318
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	305, 318
BsmAI	GTCTC	1 cut(s)	319
BsmBI	CGTCTC	1 cut(s)	319
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	323
BsoBI	CYCGRG	2 cut(s)	34, 318
Bsp143I	GATC	3 cut(s)	58, 383, 406
BspANI	GGCC	1 cut(s)	323
BspDI	ATCGAT	1 cut(s)	221
BspLI	GGNNCC	2 cut(s)	297, 310
BspMI	ACCTGC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	391
BspT107I	GGYRCC	1 cut(s)	308
BsrFI	RCCGGY	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	3 cut(s)	58, 383, 406
Bst4CI	ACNGT	2 cut(s)	178, 345
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	269
BstKTI	GATC	3 cut(s)	61, 386, 409
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	3 cut(s)	58, 383, 406
BstSFI	CTRYAG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	383
BstYI	RGATCY	1 cut(s)	383
Bsu15I	ATCGAT	1 cut(s)	221
BsuRI	GGCC	1 cut(s)	323
BsuTUI	ATCGAT	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	269
BtsIMutI	CAGTG	1 cut(s)	182
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	294
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	245, 321
ClaI	ATCGAT	1 cut(s)	221
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	5 cut(s)	96, 160, 296, 323, 364
CviKI_1	RGCY	5 cut(s)	96, 160, 296, 323, 364
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	3 cut(s)	60, 385, 408
DpnII	GATC	3 cut(s)	58, 383, 406
DraIII	CACNNNGTG	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	245
Eco88I	CYCGRG	2 cut(s)	34, 318
EcoO109I	RGGNCCY	1 cut(s)	245
Esp3I	CGTCTC	1 cut(s)	319
FaeI	CATG	1 cut(s)	106
FaiI	YATR	5 cut(s)	104, 242, 286, 333, 393
FatI	CATG	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	152
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	323
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	1 cut(s)	106
HinfI	GANTC	2 cut(s)	226, 328
HpaII	CCGG	1 cut(s)	93
Hpy188I	TCNGA	2 cut(s)	58, 406
Hpy188III	TCNNGA	2 cut(s)	73, 213
HpyAV	CCTTC	1 cut(s)	57
HpyCH4III	ACNGT	2 cut(s)	178, 345
HpyCH4V	TGCA	2 cut(s)	11, 251
HpyF3I	CTNAG	1 cut(s)	366
Hsp92II	CATG	1 cut(s)	106
Kzo9I	GATC	3 cut(s)	58, 383, 406
LmnI	GCTCC	2 cut(s)	215, 301
LpnPI	CCDG	7 cut(s)	36, 106, 198, 243, 261, 278, 366
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	1 cut(s)	227
MaeI	CTAG	1 cut(s)	152
MaeIII	GTNAC	4 cut(s)	121, 178, 266, 339
MalI	GATC	3 cut(s)	60, 385, 408
MboI	GATC	3 cut(s)	58, 383, 406
MboII	GAAGA	4 cut(s)	21, 53, 378, 401
MflI	RGATCY	1 cut(s)	383
MmeI	TCCRAC	2 cut(s)	181, 323
MnlI	CCTC	5 cut(s)	43, 110, 139, 148, 199
MslI	CAYNNNNRTG	1 cut(s)	256
MspI	CCGG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	68
NdeII	GATC	3 cut(s)	58, 383, 406
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	2 cut(s)	297, 310
NmuCI	GTSAC	2 cut(s)	121, 178
OliI	CACNNNNGTG	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PctI	GAATGC	1 cut(s)	68
PfeI	GAWTC	2 cut(s)	226, 328
PflMI	CCANNNNNTGG	1 cut(s)	305
PkrI	GCNGC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	245
Psp5II	RGGWCCY	1 cut(s)	245
PspN4I	GGNNCC	2 cut(s)	297, 310
PspPI	GGNCC	2 cut(s)	245, 321
PspPPI	RGGWCCY	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	383
RseI	CAYNNNNRTG	1 cut(s)	256
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	3 cut(s)	58, 383, 406
Sau96I	GGNCC	2 cut(s)	245, 321
SetI	ASST	2 cut(s)	210, 250
SfaNI	GCATC	1 cut(s)	227
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	1 cut(s)	245
SmiMI	CAYNNNNRTG	1 cut(s)	256
SspMI	CTAG	1 cut(s)	152
TaaI	ACNGT	2 cut(s)	178, 345
TaqI	TCGA	1 cut(s)	221
TfiI	GAWTC	2 cut(s)	226, 328
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	2 cut(s)	121, 178
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	2 cut(s)	121, 178
TspDTI	ATGAA	3 cut(s)	73, 239, 320
TspRI	CASTG	1 cut(s)	189
Van91I	CCANNNNNTGG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	245
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.