Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001055

Physical Location & Seq

Genomic Coordinates Forward (+)

11450315 .. 11452068

Gene Structure 1754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G31885.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCTGAGATTTCTGATATTACTACTCAGACACAAACCGTTGTCTTGGACATCGAAAACTATCAATCCATTGATGATTCCCGGTCGTCGGATTTATCCGCTCCTCTTGTGTCCGTATCGTTCGTTCAAAAGTTGATTGGAGAGTTCGTGGGGACATTCACTATGATATTTGCCGGTTGCTCAGCCATCGTGGTAAATGAGACGTATGGCAAACCGGTGACACTTCCCGGTATAGCTTTGGTATGGGGACTAGTCGTAACGGTTATGATCTACTCAATTGGTCATGTCTCTGGTGCACATTTCAACCCTGCTGTTTCTATTGCCTTTGCCTCTTCTAAGAAGTTCCCTTTTAATCAGGTTCCGGGGTACATTGCCGCTCAACTTCTCGGATCGACCTTAGCGGCTGCAGTTCTACGGCTTGTGTTCCATCTAGACGACGATGTTTGTAGCCTCAAAGGCGATGTTTATGTGGGAACATATCCGTCAAACTCAAATACGACCTCGTTCGTAATGGAGTTCATCGCTACTTTCAATCTAATGTTTGTTATATCTGCTGTCGCAACCGATAAACGGGCCACCGGGTCATTCGCTGGAATCGCTATTGGCGCAACCATAGTACTCGACATCCTTTTCTCCGGGCCAATTTCGGGAGCATCTATGAATCCAGCAAGAAGCTTAGGGCCTGCACTTATATGGGGATGTTATAAGGATTTATGGTTATACATAGTTTCACCCGTGATCGGGGCATTATCAGGTGCATGGACTTATGGTTTGTTACGATCGACAAAGAAATCATATAGTGAGATTATTCGTCCAAATTGCAATAAAGTATCTTCGAGAGATCGCCAAGAAGCTTCCCAAGATGAGATTTGTGTTCTACGAGTGGTTGATCCGGCTAATCAAAACTATTTTATATGTTCATCACCTACTGATATCAATGGCAAATGTAATGTTACATGTAAGTTGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005215 GO:0005342 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009628 GO:0012505 GO:0012506 GO:0015075 GO:0015103 GO:0015105 GO:0015129 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015700 GO:0015711 GO:0015718 GO:0015727 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031347 GO:0031410 GO:0031982 GO:0034220 GO:0035873 GO:0036293 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046685 GO:0046942 GO:0046943 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0065007 GO:0070482 GO:0071702 GO:0071944 GO:0080134 GO:0080170 GO:0097708 GO:0098588 GO:0098656 GO:0098805 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

323

Amino Acids

34.58

Weight (kDa)

5.61

Isoelectric Point (pI)

29.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	1 - 202	9.8e-54	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31885 AT1G31885 AT1G31885 AT2G29870 AT2G34390 AT2G34390 AT2G34390 AT2G34390 AT4G18910 AT4G18910 AT4G19030 AT4G19030 AT4G19030
fragaria_vesca	FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07071 FvH4_3g07090 FvH4_6g07990 FvH4_6g08000 FvH4_6g08000 FvH4_6g08000
malus_domestica	MD00G1007200.v1.1 MD10G1273700.v1.1
prunus_persica	Prupe.4G068700_v2.0.a1
pyrus_communis	pycom05g27250 pycom10g22860
rosa_chinensis	RchiOBHm_Chr5g0012031 RchiOBHm_Chr5g0012041 RchiOBHm_Chr6g0279421
rosa_laevigata	RLG00000013147 RLG00000031880 RLG00000031881
rosa_multiflora	Rmu_sc0002519.1_g000006 Rmu_sc0020506.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064540 Rroxscaffold_1G00064560 Rroxscaffold_2G00109780 Rroxscaffold_7G00188910
rosa_rugosa	Rorug02G0319800 Rorug04G0460400 Rorug06G0124200
rosa_samantha	Rh5AG092600 Rh5BG088400 Rh5BG088600 Rh5CG102200 Rh5DG088900 Rh5DG089000 Rh6AG233100 Rh6BG237400 Rh6CG239600 Rh6DG231500
rosa_wichuraiana	Rw2G030270 Rw5G008080 Rw5G008090 Rw6G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	705
AccBSI	CCGCTC	2 cut(s)	101, 377
AciI	CCGC	3 cut(s)	99, 375, 401
AclWI	GGATC	2 cut(s)	397, 884
AfaI	GTAC	2 cut(s)	368, 618
AfiI	CCNNNNNNNGG	5 cut(s)	88, 570, 647, 740, 741
AflIII	ACRYGT	1 cut(s)	956
AgeI	ACCGGT	1 cut(s)	214
AgsI	TTSAA	3 cut(s)	128, 304, 532
AhlI	ACTAGT	1 cut(s)	250
AluBI	AGCT	3 cut(s)	236, 675, 854
AluI	AGCT	3 cut(s)	236, 675, 854
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	2 cut(s)	194, 292
Alw44I	GTGCAC	1 cut(s)	294
AlwI	GGATC	2 cut(s)	397, 884
AoxI	GGCC	3 cut(s)	573, 638, 680
ApaLI	GTGCAC	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	404
ArsI	GACNNNNNNTTYG	2 cut(s)	754, 786
AsiGI	ACCGGT	1 cut(s)	214
AspLEI	GCGC	1 cut(s)	608
AspS9I	GGNCC	3 cut(s)	573, 638, 680
AsuC2I	CCSGG	5 cut(s)	82, 228, 363, 580, 637
AsuHPI	GGTGA	3 cut(s)	229, 723, 915
BaeGI	GKGCMC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	2 cut(s)	194, 435
BceAI	ACGGC	1 cut(s)	431
BcnI	CCSGG	5 cut(s)	82, 228, 363, 580, 637
BcoDI	GTCTC	2 cut(s)	194, 292
BcuI	ACTAGT	1 cut(s)	250
BfaI	CTAG	2 cut(s)	251, 431
BfmI	CTRYAG	1 cut(s)	405
BglI	GCCNNNNNGGC	1 cut(s)	456
BisI	GCNGC	3 cut(s)	375, 402, 405
BlpI	GCTNAGC	1 cut(s)	181
BlsI	GCNGC	3 cut(s)	376, 403, 406
BmcAI	AGTACT	1 cut(s)	618
Bme1390I	CCNGG	5 cut(s)	82, 228, 363, 580, 637
BmgT120I	GGNCC	3 cut(s)	573, 638, 680
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	5 cut(s)	82, 228, 363, 580, 637
BmsI	GCATC	1 cut(s)	662
Bpu10I	CCTNAGC	2 cut(s)	397, 676
Bpu1102I	GCTNAGC	1 cut(s)	181
BpuMI	CCSGG	5 cut(s)	82, 228, 363, 580, 637
BsaJI	CCNNGG	1 cut(s)	362
BsaWI	WCCGGW	1 cut(s)	214
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	5 cut(s)	88, 570, 647, 740, 741
Bse118I	RCCGGY	2 cut(s)	173, 214
Bse3DI	GCAATG	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	2 cut(s)	624, 704
BseLI	CCNNNNNNNGG	5 cut(s)	88, 570, 647, 740, 741
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	2 cut(s)	41, 195
BseRI	GAGGAG	1 cut(s)	93
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	391
BsgI	GTGCAG	1 cut(s)	669
Bsh1285I	CGRYCG	2 cut(s)	86, 782
BshFI	GGCC	3 cut(s)	575, 640, 682
BshTI	ACCGGT	1 cut(s)	214
BsiEI	CGRYCG	2 cut(s)	86, 782
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	8 cut(s)	82, 174, 215, 228, 362, 579, 636, 893
BslFI	GGGAC	2 cut(s)	166, 261
BslI	CCNNNNNNNGG	5 cut(s)	88, 570, 647, 740, 741
BsmAI	GTCTC	2 cut(s)	194, 292
BsmBI	CGTCTC	1 cut(s)	194
BsmFI	GGGAC	2 cut(s)	166, 261
BsnI	GGCC	3 cut(s)	575, 640, 682
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	6 cut(s)	267, 389, 738, 779, 841, 889
Bsp1720I	GCTNAGC	1 cut(s)	181
BspACI	CCGC	3 cut(s)	99, 375, 401
BspANI	GGCC	3 cut(s)	575, 640, 682
BspCNI	CTCAG	2 cut(s)	40, 194
BspLI	GGNNCC	1 cut(s)	360
BspMAI	CTGCAG	1 cut(s)	409
BspPI	GGATC	2 cut(s)	397, 884
BsrBI	CCGCTC	2 cut(s)	101, 377
BsrDI	GCAATG	1 cut(s)	369
BsrFI	RCCGGY	2 cut(s)	173, 214
BssAI	RCCGGY	2 cut(s)	173, 214
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	6 cut(s)	267, 389, 738, 779, 841, 889
Bst4CI	ACNGT	2 cut(s)	40, 262
Bst6I	CTCTTC	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	684
BstDEI	CTNAG	6 cut(s)	6, 27, 181, 336, 397, 676
BstF5I	GGATG	2 cut(s)	624, 704
BstHHI	GCGC	1 cut(s)	608
BstKTI	GATC	6 cut(s)	270, 392, 741, 782, 844, 892
BstMAI	GTCTC	2 cut(s)	194, 292
BstMBI	GATC	6 cut(s)	267, 389, 738, 779, 841, 889
BstMCI	CGRYCG	2 cut(s)	86, 782
BstMWI	GCNNNNNNNGC	3 cut(s)	456, 596, 605
BstNSI	RCATGY	1 cut(s)	960
BstSCI	CCNGG	5 cut(s)	80, 226, 361, 578, 635
BstSFI	CTRYAG	1 cut(s)	405
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	391
BsuRI	GGCC	3 cut(s)	575, 640, 682
BtgZI	GCGATG	2 cut(s)	474, 505
BtsCI	GGATG	2 cut(s)	624, 704
Cac8I	GCNNGC	1 cut(s)	684
CfoI	GCGC	1 cut(s)	608
Cfr10I	RCCGGY	2 cut(s)	173, 214
Cfr13I	GGNCC	3 cut(s)	573, 638, 680
Csp6I	GTAC	2 cut(s)	367, 617
CspAI	ACCGGT	1 cut(s)	214
CviAII	CATG	3 cut(s)	284, 759, 957
CviQI	GTAC	2 cut(s)	367, 617
DdeI	CTNAG	6 cut(s)	6, 27, 181, 336, 397, 676
DpnI	GATC	6 cut(s)	269, 391, 740, 781, 843, 891
DpnII	GATC	6 cut(s)	267, 389, 738, 779, 841, 889
Eam1104I	CTCTTC	1 cut(s)	337
EarI	CTCTTC	1 cut(s)	337
Eco32I	GATATC	1 cut(s)	934
EcoO109I	RGGNCCY	1 cut(s)	680
EcoRV	GATATC	1 cut(s)	934
Esp3I	CGTCTC	1 cut(s)	194
FaeI	CATG	3 cut(s)	287, 762, 960
FaqI	GGGAC	2 cut(s)	166, 261
FatI	CATG	3 cut(s)	283, 758, 956
Fnu4HI	GCNGC	3 cut(s)	375, 402, 405
FokI	GGATG	2 cut(s)	611, 711
Fsp4HI	GCNGC	3 cut(s)	375, 402, 405
FspBI	CTAG	2 cut(s)	251, 431
GlaI	GCGC	1 cut(s)	607
GluI	GCNGC	3 cut(s)	375, 402, 405
HaeIII	GGCC	3 cut(s)	575, 640, 682
HapII	CCGG	8 cut(s)	82, 174, 215, 228, 362, 579, 636, 893
HhaI	GCGC	1 cut(s)	608
Hin1II	CATG	3 cut(s)	287, 762, 960
Hin6I	GCGC	1 cut(s)	606
HinP1I	GCGC	1 cut(s)	606
HindIII	AAGCTT	2 cut(s)	673, 852
HinfI	GANTC	3 cut(s)	77, 594, 661
HpaII	CCGG	8 cut(s)	82, 174, 215, 228, 362, 579, 636, 893
HphI	GGTGA	3 cut(s)	229, 723, 915
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	4 cut(s)	16, 30, 91, 389
Hpy188III	TCNNGA	3 cut(s)	431, 648, 837
Hpy8I	GTNNAC	1 cut(s)	296
Hpy99I	CGWCG	2 cut(s)	91, 440
HpyCH4III	ACNGT	2 cut(s)	40, 262
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	5 cut(s)	296, 407, 686, 758, 822
HpyF10VI	GCNNNNNNNGC	3 cut(s)	456, 596, 605
HpyF3I	CTNAG	6 cut(s)	6, 27, 181, 336, 397, 676
HpySE526I	ACGT	1 cut(s)	203
Hsp92II	CATG	3 cut(s)	287, 762, 960
HspAI	GCGC	1 cut(s)	606
Kzo9I	GATC	6 cut(s)	267, 389, 738, 779, 841, 889
LmnI	GCTCC	2 cut(s)	106, 650
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	1 cut(s)	662
MaeI	CTAG	2 cut(s)	251, 431
MaeII	ACGT	1 cut(s)	203
MaeIII	GTNAC	4 cut(s)	217, 256, 774, 952
MalI	GATC	6 cut(s)	269, 391, 740, 781, 843, 891
MbiI	CCGCTC	2 cut(s)	101, 377
MboI	GATC	6 cut(s)	267, 389, 738, 779, 841, 889
MboII	GAAGA	2 cut(s)	324, 825
MfeI	CAATTG	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	3 cut(s)	276, 642, 817
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	4 cut(s)	114, 340, 461, 511
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	691
MspI	CCGG	8 cut(s)	82, 174, 215, 228, 362, 579, 636, 893
MspR9I	CCNGG	5 cut(s)	82, 228, 363, 580, 637
MunI	CAATTG	1 cut(s)	276
MwoI	GCNNNNNNNGC	3 cut(s)	456, 596, 605
NciI	CCSGG	5 cut(s)	82, 228, 363, 580, 637
NdeII	GATC	6 cut(s)	267, 389, 738, 779, 841, 889
NlaIII	CATG	3 cut(s)	287, 762, 960
NlaIV	GGNNCC	1 cut(s)	360
NmuCI	GTSAC	1 cut(s)	217
NspI	RCATGY	1 cut(s)	960
PciI	ACATGT	1 cut(s)	956
PfeI	GAWTC	3 cut(s)	77, 594, 661
PinAI	ACCGGT	1 cut(s)	214
PkrI	GCNGC	3 cut(s)	376, 403, 406
Ple19I	CGATCG	1 cut(s)	782
PscI	ACATGT	1 cut(s)	956
PsiI	TTATAA	1 cut(s)	705
PspN4I	GGNNCC	1 cut(s)	360
PspPI	GGNCC	3 cut(s)	573, 638, 680
PsrI	GAACNNNNNNTAC	2 cut(s)	108, 140
PstI	CTGCAG	1 cut(s)	409
PvuI	CGATCG	1 cut(s)	782
RsaI	GTAC	2 cut(s)	368, 618
RsaNI	GTAC	2 cut(s)	367, 617
RseI	CAYNNNNRTG	1 cut(s)	691
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	3 cut(s)	375, 402, 405
Sau3AI	GATC	6 cut(s)	267, 389, 738, 779, 841, 889
Sau96I	GGNCC	3 cut(s)	573, 638, 680
ScaI	AGTACT	1 cut(s)	618
ScrFI	CCNGG	5 cut(s)	82, 228, 363, 580, 637
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	9 cut(s)	206, 238, 360, 398, 503, 677, 757, 856, 928
SfaNI	GCATC	1 cut(s)	662
SfcI	CTRYAG	1 cut(s)	405
SmiMI	CAYNNNNRTG	1 cut(s)	691
SpeI	ACTAGT	1 cut(s)	250
Sse9I	AATT	3 cut(s)	276, 642, 817
SsiI	CCGC	3 cut(s)	99, 375, 401
SspMI	CTAG	2 cut(s)	251, 431
StyD4I	CCNGG	5 cut(s)	80, 226, 361, 578, 635
TaaI	ACNGT	2 cut(s)	40, 262
TaiI	ACGT	1 cut(s)	206
TaqI	TCGA	5 cut(s)	54, 392, 621, 782, 836
TasI	AATT	3 cut(s)	276, 642, 817
TatI	WGTACW	1 cut(s)	616
TauI	GCSGC	2 cut(s)	377, 404
TfiI	GAWTC	3 cut(s)	77, 594, 661
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	1 cut(s)	404
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	3 cut(s)	508, 674, 909
TspGWI	ACGGA	2 cut(s)	103, 471
VneI	GTGCAC	1 cut(s)	294
XbaI	TCTAGA	1 cut(s)	430
XceI	RCATGY	1 cut(s)	960
XspI	CTAG	2 cut(s)	251, 431
ZrmI	AGTACT	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.