Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003764

Physical Location & Seq

Genomic Coordinates Reverse (-)

745766 .. 748539

Gene Structure 2774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g01140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGCGGGCGTTCTTTTGTGAACTGTTGGCCTTCAACGGGATTTCTACCAATCTTGTCAACTATTTCACCGATAAACTGCACGAAGAAACTGTTGTTGCTTCAACAAGTATCACTAGTTGGAAAGGAAATGCTATATCGCACCCGGGCTGTTCGTGTCCATTCCATGCATGGCAGCTGCTCTTGGGCCTTAAATTTCTACACCGACCCACGCCCCGTTTAACCGAACCCGATTGGCTTAAACCTAAAACATTCTTCCACAATCTGCCTCTCTCTTACGTTCGCCGTCGCCACTCCCTGGGAATCCTGATTCTGCACCAGCAAAATCTCCGTCGATTCCTTACTTCTCCGACTCCGACGATGAGGCCGATACTGATGAAAGGGCACGAGAGGCCCTTGACTTTCCTCAAATACAACAGGGACGGTGACCTCCTCTTCTCCTGCGCCAAGGACCACAACCCCACCGTCTGGTTCGCCGACAACGGCGAGCGCCTCGGGACCTACCGCGGCCACAACGGCGCCGTTTGGTGCTGCGATGTGTCCAGAGACTCCGCCCGCCTCATTACCGGCAGCGCCGACCAGACCGCCAAGCTGTGGAACGTTCAGTCCGGTCAGCAGCTTTTCACCTTCAATTTTGACTCGCCGGCGAGGGCTGTTGACTTCTCCGTCGGCGATAAGCTCGCCGTCATCACCACCGACCCCTTCATGGACGTTACGTCGGCGATTCACGTCAAGCGTATCGCCGGAGATCCCGAAGATCAGATTGGTGAATCGGCTCTGATACTCAAGGGACCTCAGGGAAGAATTAACAGAGCTGTTTGGGGCCCTCTGAACAGAACCATCATAAGCGCCGGAGAAGACGCAGTTATTCGCATTTGGGATTCTGAGACTGGTAAACTACTTAAGGAGAATGATCCGGAAGTGGGTCACAAAAAGACCATAACTTCGCTTGCGAAATCTGTGGATGGTTCACATTTCCTCACCGGTTCGCTAGATAAATCTGCCAAGCTGTGGGATACTAGAACGTTGACTCTTATCAAGACCTATGTGACAGAGCGTCCTGTCAATGCCGTTGCAATGTCTCCCCTTTGTGATCATGTGGTACTTGGTGGTGGTCAGGATGCATCAACTGTCACCACAACTGATCATCGTTCTGGGAAATTTGAAGCCAAATTCTATGACAAGATTCTTCAAGAAGAAATTGGAGGTGTTAAAGGGCATTTTGGACCTATAAATGCTTTGGCGTTTAATCCCGATGGAAAAAGTTTCTCAAGCGGAGGTGAGGATGGTTACGTACGTTTACATCACTTTGATTCTGATTACTTCCACATCAAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0031461 GO:0032991 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

WD40

Protein Analysis

446

Amino Acids

49.59

Weight (kDa)

8.56

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46280 AT2G46280 AT2G46290
fragaria_vesca	FvH4_4g35950
malus_domestica	MD00G1099900.v1.1 MD13G1013500.v1.1 MD15G1352700.v1.1 MD16G1010400.v1.1
prunus_persica	Prupe.1G340200_v2.0.a1 Prupe.3G206800_v2.0.a1
pyrus_communis	pycom02g16760 pycom13g01140 pycom16g01020
rosa_chinensis	RchiOBHm_Chr4g0445591 RchiOBHm_Chr5g0012021
rosa_laevigata	RLG00000005728 RLG00000031879
rosa_multiflora	Rmu_sc0010148.1_g000009 Rmu_sc0023810.1_g000001 Rmu_ssc0000253.1_g000008
rosa_roxburghii	Rroxscaffold_1G00064570 Rroxscaffold_5G00386060
rosa_rugosa	Rorug04G0362700 Rorug04G0460400
rosa_samantha	Rh4AG424100 Rh4BG436200 Rh4CG450800 Rh4DG432700 Rh5AG092500 Rh5BG088300 Rh5CG102100 Rh5DG088800
rosa_wichuraiana	Rw4G036360 Rw5G008070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	662
AccB1I	GGYRCC	1 cut(s)	515
AccB7I	CCANNNNNTGG	4 cut(s)	295, 465, 591, 1008
AccII	CGCG	1 cut(s)	504
AccIII	TCCGGA	1 cut(s)	913
AciI	CCGC	7 cut(s)	4, 502, 504, 549, 553, 582, 1272
AclI	AACGTT	2 cut(s)	597, 1022
AclWI	GGATC	2 cut(s)	740, 905
AcoI	YGGCCR	1 cut(s)	505
AcsI	RAATTY	3 cut(s)	191, 1157, 1169
AcyI	GRCGYC	1 cut(s)	516
AfaI	GTAC	2 cut(s)	1101, 1293
AfiI	CCNNNNNNNGG	7 cut(s)	36, 295, 465, 591, 703, 920, 1008
AflII	CTTAAG	1 cut(s)	899
AgeI	ACCGGT	1 cut(s)	980
AgsI	TTSAA	5 cut(s)	34, 102, 628, 1163, 1190
AhdI	GACNNNNNGTC	2 cut(s)	712, 1053
AhlI	ACTAGT	1 cut(s)	113
AjiI	CACGTC	1 cut(s)	727
AjnI	CCWGG	1 cut(s)	294
AjuI	GAANNNNNNNTTGG	2 cut(s)	744, 776
AloI	GAACNNNNNNTCC	2 cut(s)	587, 619
AluBI	AGCT	6 cut(s)	175, 589, 616, 676, 812, 1006
AluI	AGCT	6 cut(s)	175, 589, 616, 676, 812, 1006
Alw26I	GTCTC	3 cut(s)	537, 878, 1083
AlwI	GGATC	2 cut(s)	740, 905
Ama87I	CYCGRG	2 cut(s)	142, 491
Aor13HI	TCCGGA	1 cut(s)	913
AoxI	GGCC	6 cut(s)	27, 184, 362, 389, 505, 820
ApaI	GGGCCC	1 cut(s)	824
ApeKI	GCWGC	5 cut(s)	172, 175, 528, 567, 613
ApoI	RAATTY	3 cut(s)	191, 1157, 1169
ArsI	GACNNNNNNTTYG	4 cut(s)	313, 345, 925, 957
AsiGI	ACCGGT	1 cut(s)	980
AspLEI	GCGC	5 cut(s)	443, 489, 518, 572, 848
AspS9I	GGNCC	8 cut(s)	184, 390, 448, 495, 788, 820, 821, 1223
AsuC2I	CCSGG	2 cut(s)	143, 144
AsuHPI	GGTGA	8 cut(s)	58, 434, 613, 679, 776, 970, 1123, 1289
AvaI	CYCGRG	2 cut(s)	142, 491
AvaII	GGWCC	4 cut(s)	448, 495, 788, 1223
AxyI	CCTNAGG	1 cut(s)	792
BaeGI	GKGCMC	2 cut(s)	384, 824
BanI	GGYRCC	1 cut(s)	515
BanII	GRGCYC	1 cut(s)	824
BauI	CACGAG	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	861
BbvI	GCAGC	5 cut(s)	162, 184, 515, 579, 625
BccI	CCATC	4 cut(s)	845, 956, 1247, 1277
BceAI	ACGGC	6 cut(s)	267, 496, 503, 529, 665, 1052
BciT130I	CCWGG	1 cut(s)	296
BciVI	GTATCC	1 cut(s)	1006
BclI	TGATCA	2 cut(s)	1090, 1141
BcnI	CCSGG	2 cut(s)	143, 144
BcoDI	GTCTC	3 cut(s)	537, 878, 1083
BcuI	ACTAGT	1 cut(s)	113
BfaI	CTAG	3 cut(s)	114, 989, 1017
BfoI	RGCGCY	4 cut(s)	490, 519, 573, 849
BfrI	CTTAAG	1 cut(s)	899
BfuI	GTATCC	1 cut(s)	1006
BglI	GCCNNNNNGGC	1 cut(s)	513
BisI	GCNGC	6 cut(s)	173, 176, 505, 529, 568, 614
BlsI	GCNGC	6 cut(s)	174, 177, 506, 530, 569, 615
Bme1390I	CCNGG	3 cut(s)	143, 144, 296
Bme18I	GGWCC	4 cut(s)	448, 495, 788, 1223
BmeRI	GACNNNNNGTC	2 cut(s)	712, 1053
BmeT110I	CYCGRG	2 cut(s)	142, 491
BmgBI	CACGTC	1 cut(s)	727
BmgT120I	GGNCC	8 cut(s)	184, 390, 448, 495, 788, 820, 821, 1223
BmiI	GGNNCC	5 cut(s)	496, 517, 789, 821, 822
BmrFI	CCNGG	3 cut(s)	143, 144, 296
BmsI	GCATC	2 cut(s)	1108, 1130
BpiI	GAAGAC	1 cut(s)	861
BpuEI	CTTGAG	2 cut(s)	767, 1252
BpuMI	CCSGG	2 cut(s)	143, 144
BsaAI	YACGTR	1 cut(s)	1291
BsaHI	GRCGYC	1 cut(s)	516
BsaJI	CCNNGG	6 cut(s)	142, 294, 295, 444, 490, 502
BsaWI	WCCGGW	3 cut(s)	605, 913, 980
Bsc4I	CCNNNNNNNGG	7 cut(s)	36, 295, 465, 591, 703, 920, 1008
Bse118I	RCCGGY	3 cut(s)	563, 640, 980
Bse1I	ACTGG	1 cut(s)	892
Bse21I	CCTNAGG	1 cut(s)	792
Bse3DI	GCAATG	1 cut(s)	1080
BseAI	TCCGGA	1 cut(s)	913
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	6 cut(s)	142, 294, 295, 444, 490, 502
BseGI	GGATG	3 cut(s)	967, 1123, 1288
BseLI	CCNNNNNNNGG	7 cut(s)	36, 295, 465, 591, 703, 920, 1008
BseMI	GCAATG	1 cut(s)	1080
BseMII	CTCAG	2 cut(s)	806, 873
BseNI	ACTGG	1 cut(s)	892
BseRI	GAGGAG	1 cut(s)	419
BseSI	GKGCMC	2 cut(s)	384, 824
BseXI	GCAGC	5 cut(s)	162, 184, 515, 579, 625
BsgI	GTGCAG	2 cut(s)	62, 296
Bsh1236I	CGCG	1 cut(s)	504
BshFI	GGCC	6 cut(s)	29, 186, 364, 391, 507, 822
BshNI	GGYRCC	1 cut(s)	515
BshTI	ACCGGT	1 cut(s)	980
BsiHKCI	CYCGRG	2 cut(s)	142, 491
BsiSI	CCGG	8 cut(s)	143, 564, 606, 641, 741, 849, 914, 981
BsiWI	CGTACG	1 cut(s)	1291
BslFI	GGGAC	3 cut(s)	431, 508, 801
BslI	CCNNNNNNNGG	7 cut(s)	36, 295, 465, 591, 703, 920, 1008
BsmAI	GTCTC	3 cut(s)	537, 878, 1083
BsmFI	GGGAC	3 cut(s)	431, 508, 801
BsnI	GGCC	6 cut(s)	29, 186, 364, 391, 507, 822
BsoBI	CYCGRG	2 cut(s)	142, 491
Bsp120I	GGGCCC	1 cut(s)	820
Bsp1286I	GDGCHC	2 cut(s)	384, 824
Bsp13I	TCCGGA	1 cut(s)	913
Bsp143I	GATC	5 cut(s)	745, 754, 910, 1090, 1141
BspACI	CCGC	7 cut(s)	4, 502, 504, 549, 553, 582, 1272
BspANI	GGCC	6 cut(s)	29, 186, 364, 391, 507, 822
BspCNI	CTCAG	2 cut(s)	805, 874
BspEI	TCCGGA	1 cut(s)	913
BspFNI	CGCG	1 cut(s)	504
BspLI	GGNNCC	5 cut(s)	496, 517, 789, 821, 822
BspPI	GGATC	2 cut(s)	740, 905
BspT107I	GGYRCC	1 cut(s)	515
BspTI	CTTAAG	1 cut(s)	899
BsrDI	GCAATG	1 cut(s)	1080
BsrFI	RCCGGY	3 cut(s)	563, 640, 980
BsrI	ACTGG	1 cut(s)	892
BssAI	RCCGGY	3 cut(s)	563, 640, 980
BssECI	CCNNGG	6 cut(s)	142, 294, 295, 444, 490, 502
BssMI	GATC	5 cut(s)	745, 754, 910, 1090, 1141
BssNI	GRCGYC	1 cut(s)	516
BssSI	CACGAG	1 cut(s)	383
BssT1I	CCWWGG	1 cut(s)	444
Bst2BI	CACGAG	1 cut(s)	383
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	5 cut(s)	24, 91, 422, 463, 1129
Bst6I	CTCTTC	1 cut(s)	437
BstACI	GRCGYC	1 cut(s)	516
BstAFI	CTTAAG	1 cut(s)	899
BstBAI	YACGTR	1 cut(s)	1291
BstC8I	GCNNGC	6 cut(s)	6, 485, 553, 642, 678, 948
BstDEI	CTNAG	2 cut(s)	792, 882
BstDSI	CCRYGG	1 cut(s)	502
BstEII	GGTNACC	1 cut(s)	422
BstF5I	GGATG	3 cut(s)	967, 1123, 1288
BstFNI	CGCG	1 cut(s)	504
BstH2I	RGCGCY	4 cut(s)	490, 519, 573, 849
BstHHI	GCGC	5 cut(s)	443, 489, 518, 572, 848
BstKTI	GATC	5 cut(s)	748, 757, 913, 1093, 1144
BstMAI	GTCTC	3 cut(s)	537, 878, 1083
BstMBI	GATC	5 cut(s)	745, 754, 910, 1090, 1141
BstMWI	GCNNNNNNNGC	2 cut(s)	388, 513
BstNI	CCWGG	1 cut(s)	296
BstPI	GGTNACC	1 cut(s)	422
BstSCI	CCNGG	3 cut(s)	141, 142, 294
BstSLI	GKGCMC	2 cut(s)	384, 824
BstSNI	TACGTA	1 cut(s)	1291
BstUI	CGCG	1 cut(s)	504
BstV1I	GCAGC	5 cut(s)	162, 184, 515, 579, 625
BstV2I	GAAGAC	1 cut(s)	861
BstX2I	RGATCY	1 cut(s)	745
BstYI	RGATCY	1 cut(s)	745
Bsu36I	CCTNAGG	1 cut(s)	792
BsuI	GTATCC	1 cut(s)	1006
BsuRI	GGCC	6 cut(s)	29, 186, 364, 391, 507, 822
BtgI	CCRYGG	1 cut(s)	502
BtgZI	GCGATG	1 cut(s)	546
BtrI	CACGTC	1 cut(s)	727
BtsCI	GGATG	3 cut(s)	967, 1123, 1288
Cac8I	GCNNGC	6 cut(s)	6, 485, 553, 642, 678, 948
CfoI	GCGC	5 cut(s)	443, 489, 518, 572, 848
Cfr10I	RCCGGY	3 cut(s)	563, 640, 980
Cfr13I	GGNCC	8 cut(s)	184, 390, 448, 495, 788, 820, 821, 1223
Cfr42I	CCGCGG	1 cut(s)	505
Cfr9I	CCCGGG	1 cut(s)	142
CseI	GACGC	2 cut(s)	866, 1043
Csp6I	GTAC	2 cut(s)	1100, 1292
CspAI	ACCGGT	1 cut(s)	980
CviAII	CATG	4 cut(s)	164, 168, 703, 1094
CviQI	GTAC	2 cut(s)	1100, 1292
DdeI	CTNAG	2 cut(s)	792, 882
DinI	GGCGCC	1 cut(s)	517
DpnI	GATC	5 cut(s)	747, 756, 912, 1092, 1143
DpnII	GATC	5 cut(s)	745, 754, 910, 1090, 1141
DrdI	GACNNNNNNGTC	1 cut(s)	662
DriI	GACNNNNNGTC	2 cut(s)	712, 1053
DseDI	GACNNNNNNGTC	1 cut(s)	662
EaeI	YGGCCR	1 cut(s)	505
Eam1104I	CTCTTC	1 cut(s)	437
Eam1105I	GACNNNNNGTC	2 cut(s)	712, 1053
EarI	CTCTTC	1 cut(s)	437
EciI	GGCGGA	1 cut(s)	538
Eco105I	TACGTA	1 cut(s)	1291
Eco130I	CCWWGG	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	824
Eco47I	GGWCC	4 cut(s)	448, 495, 788, 1223
Eco81I	CCTNAGG	1 cut(s)	792
Eco88I	CYCGRG	2 cut(s)	142, 491
Eco91I	GGTNACC	1 cut(s)	422
EcoO109I	RGGNCCY	5 cut(s)	390, 495, 788, 820, 821
EcoO65I	GGTNACC	1 cut(s)	422
EcoRII	CCWGG	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	444
EcoT22I	ATGCAT	2 cut(s)	169, 1123
EcoT38I	GRGCYC	1 cut(s)	824
EgeI	GGCGCC	1 cut(s)	517
EheI	GGCGCC	1 cut(s)	517
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	4 cut(s)	167, 171, 706, 1097
FaqI	GGGAC	3 cut(s)	431, 508, 801
FatI	CATG	4 cut(s)	163, 167, 702, 1093
FauI	CCCGC	1 cut(s)	560
FbaI	TGATCA	2 cut(s)	1090, 1141
Fnu4HI	GCNGC	6 cut(s)	173, 176, 505, 529, 568, 614
FokI	GGATG	3 cut(s)	974, 1130, 1295
FriOI	GRGCYC	1 cut(s)	824
Fsp4HI	GCNGC	6 cut(s)	173, 176, 505, 529, 568, 614
FspBI	CTAG	3 cut(s)	114, 989, 1017
GlaI	GCGC	5 cut(s)	442, 488, 517, 571, 847
GluI	GCNGC	6 cut(s)	173, 176, 505, 529, 568, 614
HaeII	RGCGCY	4 cut(s)	490, 519, 573, 849
HaeIII	GGCC	6 cut(s)	29, 186, 364, 391, 507, 822
HapII	CCGG	8 cut(s)	143, 564, 606, 641, 741, 849, 914, 981
HgaI	GACGC	2 cut(s)	866, 1043
HhaI	GCGC	5 cut(s)	443, 489, 518, 572, 848
Hin1I	GRCGYC	1 cut(s)	516
Hin1II	CATG	4 cut(s)	167, 171, 706, 1097
Hin6I	GCGC	5 cut(s)	441, 487, 516, 570, 846
HinP1I	GCGC	5 cut(s)	441, 487, 516, 570, 846
HincII	GTYRAC	3 cut(s)	58, 655, 1026
HindII	GTYRAC	3 cut(s)	58, 655, 1026
HpaII	CCGG	8 cut(s)	143, 564, 606, 641, 741, 849, 914, 981
HphI	GGTGA	8 cut(s)	58, 434, 613, 679, 776, 970, 1123, 1289
Hpy166II	GTNNAC	7 cut(s)	20, 58, 655, 893, 968, 1026, 1298
Hpy188I	TCNGA	7 cut(s)	348, 354, 759, 777, 828, 883, 1315
Hpy8I	GTNNAC	7 cut(s)	20, 58, 655, 893, 968, 1026, 1298
Hpy99I	CGWCG	5 cut(s)	288, 333, 358, 668, 718
HpyAV	CCTTC	3 cut(s)	40, 634, 709
HpyCH4III	ACNGT	5 cut(s)	24, 91, 422, 463, 1129
HpyCH4IV	ACGT	8 cut(s)	276, 597, 708, 713, 726, 1022, 1290, 1294
HpyCH4V	TGCA	5 cut(s)	79, 167, 313, 1073, 1121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	388, 513
HpyF3I	CTNAG	2 cut(s)	792, 882
HpySE526I	ACGT	8 cut(s)	276, 597, 708, 713, 726, 1022, 1290, 1294
Hsp92I	GRCGYC	1 cut(s)	516
Hsp92II	CATG	4 cut(s)	167, 171, 706, 1097
HspAI	GCGC	5 cut(s)	441, 487, 516, 570, 846
KasI	GGCGCC	1 cut(s)	515
Kpn2I	TCCGGA	1 cut(s)	913
KroI	GCCGGC	1 cut(s)	640
KroNI	GCCGGC	1 cut(s)	642
Ksp22I	TGATCA	2 cut(s)	1090, 1141
KspI	CCGCGG	1 cut(s)	505
Kzo9I	GATC	5 cut(s)	745, 754, 910, 1090, 1141
Lsp1109I	GCAGC	5 cut(s)	162, 184, 515, 579, 625
LweI	GCATC	2 cut(s)	1108, 1130
MaeI	CTAG	3 cut(s)	114, 989, 1017
MaeII	ACGT	8 cut(s)	276, 597, 708, 713, 726, 1022, 1290, 1294
MaeIII	GTNAC	6 cut(s)	422, 709, 923, 1045, 1129, 1286
MalI	GATC	5 cut(s)	747, 756, 912, 1092, 1143
MboI	GATC	5 cut(s)	745, 754, 910, 1090, 1141
MboII	GAAGA	8 cut(s)	95, 244, 424, 764, 810, 866, 1178, 1205
MflI	RGATCY	1 cut(s)	745
MhlI	GDGCHC	2 cut(s)	384, 824
MluCI	AATT	6 cut(s)	191, 628, 801, 1157, 1169, 1197
Mly113I	GGCGCC	1 cut(s)	516
MlyI	GAGTC	4 cut(s)	343, 539, 629, 1021
MmeI	TCCRAC	3 cut(s)	98, 371, 377
Mph1103I	ATGCAT	2 cut(s)	169, 1123
MreI	CGCCGGCG	1 cut(s)	640
MroI	TCCGGA	1 cut(s)	913
MroNI	GCCGGC	1 cut(s)	640
MseI	TTAA	7 cut(s)	189, 218, 237, 804, 900, 1209, 1245
MspA1I	CMGCKG	2 cut(s)	175, 504
MspCI	CTTAAG	1 cut(s)	899
MspI	CCGG	8 cut(s)	143, 564, 606, 641, 741, 849, 914, 981
MspR9I	CCNGG	3 cut(s)	143, 144, 296
MvaI	CCWGG	1 cut(s)	296
MvnI	CGCG	1 cut(s)	504
MwoI	GCNNNNNNNGC	2 cut(s)	388, 513
NaeI	GCCGGC	1 cut(s)	642
NarI	GGCGCC	1 cut(s)	516
NciI	CCSGG	2 cut(s)	143, 144
NdeII	GATC	5 cut(s)	745, 754, 910, 1090, 1141
NgoMIV	GCCGGC	1 cut(s)	640
NlaIII	CATG	4 cut(s)	167, 171, 706, 1097
NlaIV	GGNNCC	5 cut(s)	496, 517, 789, 821, 822
NmuCI	GTSAC	4 cut(s)	422, 923, 1045, 1129
NsiI	ATGCAT	2 cut(s)	169, 1123
PasI	CCCWGGG	1 cut(s)	295
PcsI	WCGNNNNNNNCGW	1 cut(s)	362
PdiI	GCCGGC	1 cut(s)	642
PfeI	GAWTC	8 cut(s)	300, 307, 333, 721, 767, 878, 1183, 1310
Pfl23II	CGTACG	1 cut(s)	1291
PflMI	CCANNNNNTGG	4 cut(s)	295, 465, 591, 1008
PinAI	ACCGGT	1 cut(s)	980
PkrI	GCNGC	6 cut(s)	174, 177, 506, 530, 569, 615
PleI	GAGTC	4 cut(s)	343, 539, 629, 1021
PluTI	GGCGCC	1 cut(s)	519
PpsI	GAGTC	4 cut(s)	343, 539, 629, 1021
Ppu21I	YACGTR	1 cut(s)	1291
PpuMI	RGGWCCY	2 cut(s)	495, 788
Psp1406I	AACGTT	2 cut(s)	597, 1022
Psp5II	RGGWCCY	2 cut(s)	495, 788
Psp6I	CCWGG	1 cut(s)	294
PspEI	GGTNACC	1 cut(s)	422
PspGI	CCWGG	1 cut(s)	294
PspLI	CGTACG	1 cut(s)	1291
PspN4I	GGNNCC	5 cut(s)	496, 517, 789, 821, 822
PspOMI	GGGCCC	1 cut(s)	820
PspPI	GGNCC	8 cut(s)	184, 390, 448, 495, 788, 820, 821, 1223
PspPPI	RGGWCCY	2 cut(s)	495, 788
PsuI	RGATCY	1 cut(s)	745
PvuII	CAGCTG	1 cut(s)	175
RsaI	GTAC	2 cut(s)	1101, 1293
RsaNI	GTAC	2 cut(s)	1100, 1292
SacII	CCGCGG	1 cut(s)	505
SaqAI	TTAA	7 cut(s)	189, 218, 237, 804, 900, 1209, 1245
SatI	GCNGC	6 cut(s)	173, 176, 505, 529, 568, 614
Sau3AI	GATC	5 cut(s)	745, 754, 910, 1090, 1141
Sau96I	GGNCC	8 cut(s)	184, 390, 448, 495, 788, 820, 821, 1223
SchI	GAGTC	4 cut(s)	343, 539, 629, 1021
ScrFI	CCNGG	3 cut(s)	143, 144, 296
SduI	GDGCHC	2 cut(s)	384, 824
SfaNI	GCATC	2 cut(s)	1108, 1130
SfoI	GGCGCC	1 cut(s)	517
Sfr303I	CCGCGG	1 cut(s)	505
SgrAI	CRCCGGYG	1 cut(s)	640
SgrBI	CCGCGG	1 cut(s)	505
SinI	GGWCC	4 cut(s)	448, 495, 788, 1223
SmaI	CCCGGG	1 cut(s)	144
SmlI	CTYRAG	3 cut(s)	782, 899, 1267
SmoI	CTYRAG	3 cut(s)	782, 899, 1267
SnaBI	TACGTA	1 cut(s)	1291
SpeI	ACTAGT	1 cut(s)	113
Sse9I	AATT	6 cut(s)	191, 628, 801, 1157, 1169, 1197
SsiI	CCGC	7 cut(s)	4, 502, 504, 549, 553, 582, 1272
SspDI	GGCGCC	1 cut(s)	515
SspMI	CTAG	3 cut(s)	114, 989, 1017
StyD4I	CCNGG	3 cut(s)	141, 142, 294
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	5 cut(s)	24, 91, 422, 463, 1129
TaiI	ACGT	8 cut(s)	279, 600, 711, 716, 729, 1025, 1293, 1297
TaqI	TCGA	1 cut(s)	331
TasI	AATT	6 cut(s)	191, 628, 801, 1157, 1169, 1197
TauI	GCSGC	1 cut(s)	507
TfiI	GAWTC	8 cut(s)	300, 307, 333, 721, 767, 878, 1183, 1310
Tru1I	TTAA	7 cut(s)	189, 218, 237, 804, 900, 1209, 1245
Tru9I	TTAA	7 cut(s)	189, 218, 237, 804, 900, 1209, 1245
TseFI	GTSAC	4 cut(s)	422, 923, 1045, 1129
TseI	GCWGC	5 cut(s)	172, 175, 528, 567, 613
Tsp45I	GTSAC	4 cut(s)	422, 923, 1045, 1129
TspDTI	ATGAA	2 cut(s)	389, 691
TspGWI	ACGGA	2 cut(s)	317, 652
TspMI	CCCGGG	1 cut(s)	142
Van91I	CCANNNNNTGG	4 cut(s)	295, 465, 591, 1008
Vha464I	CTTAAG	1 cut(s)	899
VpaK11BI	GGWCC	4 cut(s)	448, 495, 788, 1223
XapI	RAATTY	3 cut(s)	191, 1157, 1169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	165
XmaI	CCCGGG	1 cut(s)	142
XspI	CTAG	3 cut(s)	114, 989, 1017
Zsp2I	ATGCAT	2 cut(s)	169, 1123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.