Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003764

Physical Location & Seq

Genomic Coordinates Reverse (-)

624266 .. 625057

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g01020.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAGGCCGATCCTGATGAAGGGGCACGAGAGGCCCTTGACTTTCCTCAAATACAACAGGGACGGCGACCTCCTCTTCTCCTGCGCCAAGGACCACAACCCCACCGTCTGGTTCGCCGACAACGGCGAGCGCCTCGGTACCTACCGCGGACACAACGGCGCCGTCTGGTGCTGCGATGTGTCTAGAGACTCCGCCCGCCTCATTACCGGCAGCGCCGATCAGACCGCCAAGCTCTGGAACGTTCAGACCGGTCAGCAGCTCTTCACCTTCAATTTTGACTCGCCGGCGAGGGCTGTCGACTTCTCCGTCGGCGATAAACTCGCCGTCATCACCACCGACCCCTTCATGGACGTTACGTCGGCGATTCACGTCAAGCGCATCGCCAGTGACCCCGAAGATCAGGTTGGGGAATCGGCTCTGATACTCAAGGGACCTCAGGGAAGAATAAACAGAGCTGTTTGGGGCCCTCTGAACAGAACCATCATAAGCGCTGGAGAAGACGCAGTTATTCGCATTTGGGATTCTGAGACTGGTAAGCTACTTAAGGAGAATGATCGATCTCGGAAGTGGGTCACAAAAAGACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0031461 GO:0032991 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

WD40

Protein Analysis

196

Amino Acids

21.84

Weight (kDa)

8.82

Isoelectric Point (pI)

28.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46280 AT2G46280 AT2G46290
fragaria_vesca	FvH4_4g35950
malus_domestica	MD00G1099900.v1.1 MD13G1013500.v1.1 MD15G1352700.v1.1 MD16G1010400.v1.1
prunus_persica	Prupe.1G340200_v2.0.a1 Prupe.3G206800_v2.0.a1
pyrus_communis	pycom02g16760 pycom13g01140 pycom16g01020
rosa_chinensis	RchiOBHm_Chr4g0445591 RchiOBHm_Chr5g0012021
rosa_laevigata	RLG00000005728 RLG00000031879
rosa_multiflora	Rmu_sc0010148.1_g000009 Rmu_sc0023810.1_g000001 Rmu_ssc0000253.1_g000008
rosa_roxburghii	Rroxscaffold_1G00064570 Rroxscaffold_5G00386060
rosa_rugosa	Rorug04G0362700 Rorug04G0460400
rosa_samantha	Rh4AG424100 Rh4BG436200 Rh4CG450800 Rh4DG432700 Rh5AG092500 Rh5BG088300 Rh5CG102100 Rh5DG088800
rosa_wichuraiana	Rw4G036360 Rw5G008070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	305
Acc65I	GGTACC	1 cut(s)	137
AccB1I	GGYRCC	2 cut(s)	137, 158
AccB7I	CCANNNNNTGG	2 cut(s)	108, 234
AccI	GTMKAC	1 cut(s)	297
AccII	CGCG	1 cut(s)	147
AciI	CCGC	5 cut(s)	145, 147, 192, 196, 225
AclI	AACGTT	1 cut(s)	240
AclWI	GGATC	1 cut(s)	4
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	1 cut(s)	139
AfeI	AGCGCT	1 cut(s)	490
AfiI	CCNNNNNNNGG	4 cut(s)	19, 108, 234, 346
AflII	CTTAAG	1 cut(s)	542
AgeI	ACCGGT	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	271
AhdI	GACNNNNNGTC	1 cut(s)	355
AjiI	CACGTC	1 cut(s)	370
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AluBI	AGCT	4 cut(s)	232, 259, 455, 538
AluI	AGCT	4 cut(s)	232, 259, 455, 538
Alw26I	GTCTC	2 cut(s)	180, 521
AlwI	GGATC	1 cut(s)	4
Aor51HI	AGCGCT	1 cut(s)	490
AoxI	GGCC	3 cut(s)	5, 32, 463
ApaI	GGGCCC	1 cut(s)	467
ApeKI	GCWGC	3 cut(s)	171, 210, 256
AsiGI	ACCGGT	1 cut(s)	248
Asp718I	GGTACC	1 cut(s)	137
AspLEI	GCGC	6 cut(s)	86, 132, 161, 215, 378, 491
AspS9I	GGNCC	5 cut(s)	33, 91, 431, 463, 464
AsuHPI	GGTGA	2 cut(s)	256, 322
AvaII	GGWCC	2 cut(s)	91, 431
AxyI	CCTNAGG	1 cut(s)	435
BaeGI	GKGCMC	2 cut(s)	27, 467
BanI	GGYRCC	2 cut(s)	137, 158
BanII	GRGCYC	1 cut(s)	467
BauI	CACGAG	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	504
BbvI	GCAGC	3 cut(s)	158, 222, 268
BccI	CCATC	1 cut(s)	488
BceAI	ACGGC	5 cut(s)	79, 139, 146, 172, 308
BcoDI	GTCTC	2 cut(s)	180, 521
BfaI	CTAG	1 cut(s)	183
BfoI	RGCGCY	4 cut(s)	133, 162, 216, 492
BfrI	CTTAAG	1 cut(s)	542
BisI	GCNGC	3 cut(s)	172, 211, 257
BlsI	GCNGC	3 cut(s)	173, 212, 258
Bme18I	GGWCC	2 cut(s)	91, 431
BmeRI	GACNNNNNGTC	1 cut(s)	355
BmgBI	CACGTC	1 cut(s)	370
BmgT120I	GGNCC	5 cut(s)	33, 91, 431, 463, 464
BmiI	GGNNCC	5 cut(s)	139, 160, 432, 464, 465
BmsI	GCATC	1 cut(s)	387
BpiI	GAAGAC	1 cut(s)	504
BpmI	CTGGAG	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	410
Bsa29I	ATCGAT	1 cut(s)	556
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	3 cut(s)	87, 133, 145
BsaWI	WCCGGW	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	4 cut(s)	19, 108, 234, 346
Bse118I	RCCGGY	3 cut(s)	206, 248, 283
Bse1I	ACTGG	2 cut(s)	384, 535
Bse21I	CCTNAGG	1 cut(s)	435
BseCI	ATCGAT	1 cut(s)	556
BseDI	CCNNGG	3 cut(s)	87, 133, 145
BseLI	CCNNNNNNNGG	4 cut(s)	19, 108, 234, 346
BseMII	CTCAG	2 cut(s)	449, 516
BseNI	ACTGG	2 cut(s)	384, 535
BseRI	GAGGAG	1 cut(s)	62
BseSI	GKGCMC	2 cut(s)	27, 467
BseXI	GCAGC	3 cut(s)	158, 222, 268
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	3 cut(s)	7, 34, 465
BshNI	GGYRCC	2 cut(s)	137, 158
BshTI	ACCGGT	1 cut(s)	248
BshVI	ATCGAT	1 cut(s)	556
BsiSI	CCGG	3 cut(s)	207, 249, 284
BslFI	GGGAC	2 cut(s)	74, 444
BslI	CCNNNNNNNGG	4 cut(s)	19, 108, 234, 346
BsmAI	GTCTC	2 cut(s)	180, 521
BsmFI	GGGAC	2 cut(s)	74, 444
BsnI	GGCC	3 cut(s)	7, 34, 465
Bsp120I	GGGCCC	1 cut(s)	463
Bsp1286I	GDGCHC	2 cut(s)	27, 467
Bsp143I	GATC	5 cut(s)	9, 217, 397, 553, 557
BspACI	CCGC	5 cut(s)	145, 147, 192, 196, 225
BspANI	GGCC	3 cut(s)	7, 34, 465
BspCNI	CTCAG	2 cut(s)	448, 517
BspDI	ATCGAT	1 cut(s)	556
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	5 cut(s)	139, 160, 432, 464, 465
BspPI	GGATC	1 cut(s)	4
BspQI	GCTCTTC	1 cut(s)	266
BspT107I	GGYRCC	2 cut(s)	137, 158
BspTI	CTTAAG	1 cut(s)	542
BsrFI	RCCGGY	3 cut(s)	206, 248, 283
BsrI	ACTGG	2 cut(s)	384, 535
BssAI	RCCGGY	3 cut(s)	206, 248, 283
BssECI	CCNNGG	3 cut(s)	87, 133, 145
BssMI	GATC	5 cut(s)	9, 217, 397, 553, 557
BssNI	GRCGYC	1 cut(s)	159
BssSI	CACGAG	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	2 cut(s)	80, 266
BstACI	GRCGYC	1 cut(s)	159
BstAFI	CTTAAG	1 cut(s)	542
BstC8I	GCNNGC	3 cut(s)	128, 196, 285
BstDEI	CTNAG	2 cut(s)	435, 525
BstDSI	CCRYGG	1 cut(s)	145
BstENI	CCTNNNNNAGG	1 cut(s)	17
BstFNI	CGCG	1 cut(s)	147
BstH2I	RGCGCY	4 cut(s)	133, 162, 216, 492
BstHHI	GCGC	6 cut(s)	86, 132, 161, 215, 378, 491
BstKTI	GATC	5 cut(s)	12, 220, 400, 556, 560
BstMAI	GTCTC	2 cut(s)	180, 521
BstMBI	GATC	5 cut(s)	9, 217, 397, 553, 557
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstSLI	GKGCMC	2 cut(s)	27, 467
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	3 cut(s)	158, 222, 268
BstV2I	GAAGAC	1 cut(s)	504
Bsu15I	ATCGAT	1 cut(s)	556
Bsu36I	CCTNAGG	1 cut(s)	435
BsuRI	GGCC	3 cut(s)	7, 34, 465
BsuTUI	ATCGAT	1 cut(s)	556
BtgI	CCRYGG	1 cut(s)	145
BtgZI	GCGATG	2 cut(s)	189, 364
BtrI	CACGTC	1 cut(s)	370
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	3 cut(s)	128, 196, 285
CfoI	GCGC	6 cut(s)	86, 132, 161, 215, 378, 491
Cfr10I	RCCGGY	3 cut(s)	206, 248, 283
Cfr13I	GGNCC	5 cut(s)	33, 91, 431, 463, 464
Cfr42I	CCGCGG	1 cut(s)	148
ClaI	ATCGAT	1 cut(s)	556
CseI	GACGC	1 cut(s)	509
Csp6I	GTAC	1 cut(s)	138
CspAI	ACCGGT	1 cut(s)	248
CviAII	CATG	1 cut(s)	346
CviJI	RGCY	9 cut(s)	7, 34, 232, 259, 293, 416, 455, 465, 538
CviKI_1	RGCY	9 cut(s)	7, 34, 232, 259, 293, 416, 455, 465, 538
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	2 cut(s)	435, 525
DinI	GGCGCC	1 cut(s)	160
DpnI	GATC	5 cut(s)	11, 219, 399, 555, 559
DpnII	GATC	5 cut(s)	9, 217, 397, 553, 557
DrdI	GACNNNNNNGTC	1 cut(s)	305
DriI	GACNNNNNGTC	1 cut(s)	355
DseDI	GACNNNNNNGTC	1 cut(s)	305
Eam1104I	CTCTTC	2 cut(s)	80, 266
Eam1105I	GACNNNNNGTC	1 cut(s)	355
EarI	CTCTTC	2 cut(s)	80, 266
EciI	GGCGGA	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	467
Eco47I	GGWCC	2 cut(s)	91, 431
Eco47III	AGCGCT	1 cut(s)	490
Eco81I	CCTNAGG	1 cut(s)	435
EcoNI	CCTNNNNNAGG	1 cut(s)	17
EcoO109I	RGGNCCY	4 cut(s)	33, 431, 463, 464
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	467
EgeI	GGCGCC	1 cut(s)	160
EheI	GGCGCC	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	1 cut(s)	349
FaiI	YATR	3 cut(s)	347, 485, 586
FaqI	GGGAC	2 cut(s)	74, 444
FatI	CATG	1 cut(s)	345
FauI	CCCGC	1 cut(s)	203
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	3 cut(s)	172, 211, 257
FriOI	GRGCYC	1 cut(s)	467
Fsp4HI	GCNGC	3 cut(s)	172, 211, 257
FspBI	CTAG	1 cut(s)	183
GlaI	GCGC	6 cut(s)	85, 131, 160, 214, 377, 490
GluI	GCNGC	3 cut(s)	172, 211, 257
GsuI	CTGGAG	1 cut(s)	513
HaeII	RGCGCY	4 cut(s)	133, 162, 216, 492
HaeIII	GGCC	3 cut(s)	7, 34, 465
HapII	CCGG	3 cut(s)	207, 249, 284
HgaI	GACGC	1 cut(s)	509
HhaI	GCGC	6 cut(s)	86, 132, 161, 215, 378, 491
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	1 cut(s)	349
Hin6I	GCGC	6 cut(s)	84, 130, 159, 213, 376, 489
HinP1I	GCGC	6 cut(s)	84, 130, 159, 213, 376, 489
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	5 cut(s)	188, 278, 364, 410, 521
HpaII	CCGG	3 cut(s)	207, 249, 284
HphI	GGTGA	2 cut(s)	256, 322
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	6 cut(s)	222, 246, 420, 471, 526, 564
Hpy188III	TCNNGA	3 cut(s)	13, 183, 235
Hpy8I	GTNNAC	1 cut(s)	298
Hpy99I	CGWCG	2 cut(s)	311, 361
HpyAV	CCTTC	3 cut(s)	13, 277, 352
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	4 cut(s)	240, 351, 356, 369
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	2 cut(s)	435, 525
HpySE526I	ACGT	4 cut(s)	240, 351, 356, 369
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	349
HspAI	GCGC	6 cut(s)	84, 130, 159, 213, 376, 489
KasI	GGCGCC	1 cut(s)	158
KpnI	GGTACC	1 cut(s)	141
KroI	GCCGGC	1 cut(s)	283
KroNI	GCCGGC	1 cut(s)	285
KspI	CCGCGG	1 cut(s)	148
Kzo9I	GATC	5 cut(s)	9, 217, 397, 553, 557
LguI	GCTCTTC	1 cut(s)	266
Lsp1109I	GCAGC	3 cut(s)	158, 222, 268
LweI	GCATC	1 cut(s)	387
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	4 cut(s)	240, 351, 356, 369
MaeIII	GTNAC	3 cut(s)	352, 386, 571
MalI	GATC	5 cut(s)	11, 219, 399, 555, 559
MboI	GATC	5 cut(s)	9, 217, 397, 553, 557
MboII	GAAGA	5 cut(s)	67, 253, 407, 453, 509
MhlI	GDGCHC	2 cut(s)	27, 467
MluCI	AATT	1 cut(s)	271
Mly113I	GGCGCC	1 cut(s)	159
MlyI	GAGTC	2 cut(s)	182, 272
MnlI	CCTC	9 cut(s)	24, 56, 80, 83, 143, 209, 282, 444, 477
MreI	CGCCGGCG	1 cut(s)	283
MroNI	GCCGGC	1 cut(s)	283
MseI	TTAA	1 cut(s)	543
MspA1I	CMGCKG	1 cut(s)	147
MspCI	CTTAAG	1 cut(s)	542
MspI	CCGG	3 cut(s)	207, 249, 284
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	1 cut(s)	31
NaeI	GCCGGC	1 cut(s)	285
NarI	GGCGCC	1 cut(s)	159
NdeII	GATC	5 cut(s)	9, 217, 397, 553, 557
NgoMIV	GCCGGC	1 cut(s)	283
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	5 cut(s)	139, 160, 432, 464, 465
NmuCI	GTSAC	2 cut(s)	386, 571
PciSI	GCTCTTC	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PdiI	GCCGGC	1 cut(s)	285
PfeI	GAWTC	3 cut(s)	364, 410, 521
PflMI	CCANNNNNTGG	2 cut(s)	108, 234
PinAI	ACCGGT	1 cut(s)	248
PkrI	GCNGC	3 cut(s)	173, 212, 258
PleI	GAGTC	2 cut(s)	182, 272
PluTI	GGCGCC	1 cut(s)	162
PpsI	GAGTC	2 cut(s)	182, 272
PpuMI	RGGWCCY	1 cut(s)	431
Psp1406I	AACGTT	1 cut(s)	240
Psp5II	RGGWCCY	1 cut(s)	431
PspN4I	GGNNCC	5 cut(s)	139, 160, 432, 464, 465
PspOMI	GGGCCC	1 cut(s)	463
PspPI	GGNCC	5 cut(s)	33, 91, 431, 463, 464
PspPPI	RGGWCCY	1 cut(s)	431
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SacII	CCGCGG	1 cut(s)	148
SalI	GTCGAC	1 cut(s)	296
SapI	GCTCTTC	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	3 cut(s)	172, 211, 257
Sau3AI	GATC	5 cut(s)	9, 217, 397, 553, 557
Sau96I	GGNCC	5 cut(s)	33, 91, 431, 463, 464
SchI	GAGTC	2 cut(s)	182, 272
SduI	GDGCHC	2 cut(s)	27, 467
SfaNI	GCATC	1 cut(s)	387
SfoI	GGCGCC	1 cut(s)	160
Sfr303I	CCGCGG	1 cut(s)	148
SgrAI	CRCCGGYG	1 cut(s)	283
SgrBI	CCGCGG	1 cut(s)	148
SinI	GGWCC	2 cut(s)	91, 431
SmlI	CTYRAG	2 cut(s)	425, 542
SmoI	CTYRAG	2 cut(s)	425, 542
Sse9I	AATT	1 cut(s)	271
SsiI	CCGC	5 cut(s)	145, 147, 192, 196, 225
SspDI	GGCGCC	1 cut(s)	158
SspMI	CTAG	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	4 cut(s)	243, 354, 359, 372
TaqI	TCGA	2 cut(s)	297, 556
TasI	AATT	1 cut(s)	271
TfiI	GAWTC	3 cut(s)	364, 410, 521
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	2 cut(s)	386, 571
TseI	GCWGC	3 cut(s)	171, 210, 256
Tsp45I	GTSAC	2 cut(s)	386, 571
TspDTI	ATGAA	2 cut(s)	32, 334
TspGWI	ACGGA	1 cut(s)	295
TspRI	CASTG	1 cut(s)	391
Van91I	CCANNNNNTGG	2 cut(s)	108, 234
Vha464I	CTTAAG	1 cut(s)	542
VpaK11BI	GGWCC	2 cut(s)	91, 431
XagI	CCTNNNNNAGG	1 cut(s)	17
XbaI	TCTAGA	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	297
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.