Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005422

Physical Location & Seq

Genomic Coordinates Reverse (-)

5972467 .. 5974452

Gene Structure 1986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G051500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCGTGATCGTGGCCGTCGAAGGCAGCGAGGAGAACATGAACACGACTCAGTCCACCTGGCCACTGGACAGGACGTCTCCATCGCAGAGTACTCTGACTCTGAGCTGATCTTCAACAACATCTCAGACCCATTTGGGTTTGTAGTGAAGAGAAAGTCAGATGGGCTGAACATTGCATTCCATAAAGCAAAGTTCGGGTCCGGAATTCCATCGAAGACTTTGTGGGCATACGCCATTTGCTCCAGTTCGGAGCATGCTGTAATTAGTTTTGGGGGTTGTGCGAGAAGCCGTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010383 GO:0010410 GO:0010411 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045493 GO:0046556 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0071554 GO:0071704 GO:0071944 GO:0080176 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

99

Amino Acids

10.83

Weight (kDa)

9.14

Isoelectric Point (pI)

57.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68560 AT3G45940
fragaria_vesca	FvH4_4g27500
malus_domestica	MD13G1042700.v1.1 MD16G1043700.v1.1
prunus_persica	Prupe.1G309900_v2.0.a1 Prupe.2G051500_v2.0.a1 Prupe.2G076500_v2.0.a1
pyrus_communis	pycom13g03740 pycom16g03770
rosa_chinensis	RchiOBHm_Chr4g0435281 RchiOBHm_Chr4g0435321
rosa_laevigata	RLG00000006601
rosa_multiflora	Rmu_sc0000357.1_g000002 Rmu_sc0001940.1_g000004 Rmu_sc0002132.1_g000062
rosa_roxburghii	Rroxscaffold_5G00376570 Rroxscaffold_5G00376580
rosa_rugosa	Rorug04G0284200
rosa_samantha	Rh4AG339600 Rh4AG339800 Rh4BG348000 Rh4BG348300 Rh4CG362600 Rh4CG362900 Rh4DG342000 Rh4DG342100
rosa_wichuraiana	Rw4G029630 Rw4G029640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	78
AccIII	TCCGGA	1 cut(s)	200
AcoI	YGGCCR	2 cut(s)	13, 60
AcsI	RAATTY	1 cut(s)	204
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	1 cut(s)	92
AgsI	TTSAA	1 cut(s)	115
AhdI	GACNNNNNGTC	1 cut(s)	74
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
Alw26I	GTCTC	1 cut(s)	82
Aor13HI	TCCGGA	1 cut(s)	200
AoxI	GGCC	2 cut(s)	13, 60
ApeKI	GCWGC	1 cut(s)	25
ApoI	RAATTY	1 cut(s)	204
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AspS9I	GGNCC	1 cut(s)	198
AvaII	GGWCC	1 cut(s)	198
BalI	TGGCCA	1 cut(s)	62
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	3 cut(s)	89, 155, 217
BceAI	ACGGC	1 cut(s)	273
BciT130I	CCWGG	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	82
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	198
BmeRI	GACNNNNNGTC	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	221
BpmI	CTGGAG	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	289
BsaWI	WCCGGW	1 cut(s)	200
Bse1I	ACTGG	2 cut(s)	70, 243
Bse3DI	GCAATG	1 cut(s)	171
BseAI	TCCGGA	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	289
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	3 cut(s)	63, 93, 138
BseNI	ACTGG	2 cut(s)	70, 243
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	37
BshFI	GGCC	2 cut(s)	15, 62
BsiSI	CCGG	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	82
BsmBI	CGTCTC	1 cut(s)	82
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	15, 62
Bsp13I	TCCGGA	1 cut(s)	200
Bsp143I	GATC	2 cut(s)	7, 108
BspANI	GGCC	2 cut(s)	15, 62
BspCNI	CTCAG	3 cut(s)	62, 94, 137
BspEI	TCCGGA	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	171
BsrI	ACTGG	2 cut(s)	70, 243
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	2 cut(s)	7, 108
BssNI	GRCGYC	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	3 cut(s)	49, 102, 124
BstDSI	CCRYGG	1 cut(s)	289
BstKTI	GATC	2 cut(s)	10, 111
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	2 cut(s)	7, 108
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	37
BstV2I	GAAGAC	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	15, 62
BtgI	CCRYGG	1 cut(s)	289
BtgZI	GCGATG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	2 cut(s)	38, 254
CviJI	RGCY	5 cut(s)	15, 62, 106, 166, 288
CviKI_1	RGCY	5 cut(s)	15, 62, 106, 166, 288
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	3 cut(s)	49, 102, 124
DpnI	GATC	2 cut(s)	9, 110
DpnII	GATC	2 cut(s)	7, 108
DriI	GACNNNNNGTC	1 cut(s)	74
EaeI	YGGCCR	2 cut(s)	13, 60
Eam1104I	CTCTTC	1 cut(s)	143
Eam1105I	GACNNNNNGTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	198
EcoRI	GAATTC	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	57
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	2 cut(s)	41, 257
FaiI	YATR	4 cut(s)	39, 183, 229, 255
FatI	CATG	2 cut(s)	37, 253
Fnu4HI	GCNGC	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	26
GluI	GCNGC	1 cut(s)	26
GsuI	CTGGAG	1 cut(s)	226
HaeIII	GGCC	2 cut(s)	15, 62
HapII	CCGG	1 cut(s)	201
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	41, 257
HinfI	GANTC	2 cut(s)	47, 98
HpaII	CCGG	1 cut(s)	201
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	5 cut(s)	97, 103, 127, 160, 250
Hpy188III	TCNNGA	1 cut(s)	201
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	21
HpyAV	CCTTC	1 cut(s)	15
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	1 cut(s)	176
HpyF3I	CTNAG	3 cut(s)	49, 102, 124
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	41, 257
Kpn2I	TCCGGA	1 cut(s)	200
Kzo9I	GATC	2 cut(s)	7, 108
LmnI	GCTCC	2 cut(s)	245, 250
LpnPI	CCDG	6 cut(s)	44, 51, 56, 71, 214, 256
Lsp1109I	GCAGC	1 cut(s)	37
MaeII	ACGT	1 cut(s)	75
MalI	GATC	2 cut(s)	9, 110
MboI	GATC	2 cut(s)	7, 108
MboII	GAAGA	3 cut(s)	103, 160, 226
MlsI	TGGCCA	1 cut(s)	62
MluCI	AATT	2 cut(s)	204, 261
MluNI	TGGCCA	1 cut(s)	62
MlyI	GAGTC	2 cut(s)	41, 92
MnlI	CCTC	1 cut(s)	23
Mox20I	TGGCCA	1 cut(s)	62
MroI	TCCGGA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	62
Msp20I	TGGCCA	1 cut(s)	62
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	59
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	59
NdeII	GATC	2 cut(s)	7, 108
NlaIII	CATG	2 cut(s)	41, 257
NlaIV	GGNNCC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	257
PaeI	GCATGC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	2 cut(s)	16, 25
PctI	GAATGC	1 cut(s)	176
PflFI	GACNNNGTC	1 cut(s)	50
PkrI	GCNGC	1 cut(s)	27
PleI	GAGTC	2 cut(s)	41, 92
PpsI	GAGTC	2 cut(s)	41, 92
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	198
PsyI	GACNNNGTC	1 cut(s)	50
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	2 cut(s)	7, 108
Sau96I	GGNCC	1 cut(s)	198
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	2 cut(s)	41, 92
ScrFI	CCNGG	1 cut(s)	59
SetI	ASST	3 cut(s)	60, 78, 108
SinI	GGWCC	1 cut(s)	198
SphI	GCATGC	1 cut(s)	257
Sse9I	AATT	2 cut(s)	204, 261
StyD4I	CCNGG	1 cut(s)	57
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	2 cut(s)	19, 212
TasI	AATT	2 cut(s)	204, 261
TatI	WGTACW	1 cut(s)	90
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	54
TspRI	CASTG	1 cut(s)	70
Tth111I	GACNNNGTC	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	198
XapI	RAATTY	1 cut(s)	204
XceI	RCATGY	1 cut(s)	257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
ZraI	GACGTC	1 cut(s)	76
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.