Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005422

Physical Location & Seq

Genomic Coordinates Reverse (-)

56332611 .. 56336008

Gene Structure 3398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G029640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGAGGGTTTCCGGGTTATCTTCATCTCACGCATAAGGGCAAACTATGGTCATGATATCCCCCTCTTGCAACTCTTTGTCAAGCATGAAACGCAGGACCGTTTGAGGGTGCACATAACTGATGCTAAGAAACAGAGGTGGGAGGTTCCGTACAATCTCCTACCTAAAGAACAGCCACGAAAACCTAAACAAATCACTGCAAGGTCAACAAAGATCAAAGCTTCAGAGCATTCTGGCTCTAAGTTAGTCTTCAGTTACACCACAGACCCATTTGGGTTTGCTGTCAAGAGAAAATCAGATGACCAAGTTTTCTTCAATTCCAGCTCTGATCCTTCAGACCCATTTGGTGCAATGGTTTTTAAGCACCAGTACCTTGAAATCTCCACCAAGTTGCCCAAAGATGCGTCCCTATATGGCATTGGAGAGAGCACACAGAAACATGGGTTCAGGCTCCATCCTAATGATCCTCATACTCTGTTCACCTCTGATATTGCAGCTTTCAATCTCAACACTGATTTGTATGGCTCCCACCCAATTTATATGGATCTCAGGAATGTGGGTGGTGAGGCTTATGCTCATGCTGTTCTGTTGCTCAACATTAATGGCATGGATGTGTTTTACAGTGGTGATTCTTTGACATATAAGGTTATTTGGGGTGTGTTTGATTTCTACTTCTTTGCTGGGACTAATCCATCGGAGGTTGTTGGATTTCACCAATCCAGATGGGGTTACCAAAACTTATCAGTGGTTGAAGACATAGTTGAGAACTATCAAAAGGCTCCAATTCCATTAGATGTCATTTGGAATGATGATGATCACATGGACAGGAAATTAGGCCTCATTCTCAACCCCAAGAACTACCCTCGGACAAAGCTTTTGGCATTTGTAAACAAAATATATAGCATGGCCATGAAGTACATTGTCATTATTGATCCTGGAAATGCTGTTAATCCCAGTTATGGTGTATGGCAAAGAGGTATTGCTAATGATGTTTTTATAAAGCATGAGGGTGAACCCTTCTTGACCCAAGTTGCACCAGGGCCTGTAACCTTCCCGGACTACCTCAACCCCAAAACTGTGTCATGGCGGGGTGATGAGATCTGCCTCTTTCATGAACTTGTCCCTGTTGTTGGCTTATGGATTGACTTGAACAAGGCTGCAGGGACCAGGATCATAGCCGCTAGTGCATATCACTATAATGGCATTTTAGAGTACAGTGCTCGCAATCTGTATGGCATCTCCGAAACCATTGCAACTCAGAAGGCTCTTGTAGGCCTTGATGGCAAGCGGCCCTTTGTACTATCCCGCTCCACTTATGTTGGTTCAGGCAAGTATGCTGCACATTGGACTGGTGATAACAAGGGTACTTGGGATGACCTGAAGTACTCAAATCCCCAACTTGCTCAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010383 GO:0010410 GO:0010411 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045493 GO:0046556 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0071554 GO:0071704 GO:0071944 GO:0080176 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

470

Amino Acids

53.25

Weight (kDa)

8.26

Isoelectric Point (pI)

30.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gal_mutarotas_2	PF13802	34 - 191	9.7e-10	Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain
Glyco_hydro_31_2nd	PF01055	233 - 470	1e-57	Glycosyl hydrolases family 31 TIM-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68560 AT3G45940
fragaria_vesca	FvH4_4g27500
malus_domestica	MD13G1042700.v1.1 MD16G1043700.v1.1
prunus_persica	Prupe.1G309900_v2.0.a1 Prupe.2G051500_v2.0.a1 Prupe.2G076500_v2.0.a1
pyrus_communis	pycom13g03740 pycom16g03770
rosa_chinensis	RchiOBHm_Chr4g0435281 RchiOBHm_Chr4g0435321
rosa_laevigata	RLG00000006601
rosa_multiflora	Rmu_sc0000357.1_g000002 Rmu_sc0001940.1_g000004 Rmu_sc0002132.1_g000062
rosa_roxburghii	Rroxscaffold_5G00376570 Rroxscaffold_5G00376580
rosa_rugosa	Rorug04G0284200
rosa_samantha	Rh4AG339600 Rh4AG339800 Rh4BG348000 Rh4BG348300 Rh4CG362600 Rh4CG362900 Rh4DG342000 Rh4DG342100
rosa_wichuraiana	Rw4G029630 Rw4G029640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	998
AccBSI	CCGCTC	1 cut(s)	1308
AciI	CCGC	4 cut(s)	1087, 1179, 1288, 1306
AclWI	GGATC	5 cut(s)	323, 458, 552, 926, 1178
AcoI	YGGCCR	1 cut(s)	906
AcuI	CTGAAG	4 cut(s)	207, 235, 318, 1400
AfaI	GTAC	7 cut(s)	152, 371, 917, 1214, 1299, 1366, 1385
AfiI	CCNNNNNNNGG	3 cut(s)	106, 959, 1130
AgsI	TTSAA	5 cut(s)	316, 377, 502, 752, 1150
AjnI	CCWGG	3 cut(s)	934, 1036, 1166
AluBI	AGCT	4 cut(s)	221, 324, 497, 874
AluI	AGCT	4 cut(s)	221, 324, 497, 874
Alw21I	GWGCWC	3 cut(s)	114, 431, 1222
Alw44I	GTGCAC	1 cut(s)	110
AlwI	GGATC	5 cut(s)	323, 458, 552, 926, 1178
AlwNI	CAGNNNCTG	1 cut(s)	1043
AoxI	GGCC	5 cut(s)	835, 906, 1040, 1273, 1289
ApaLI	GTGCAC	1 cut(s)	110
ApeKI	GCWGC	3 cut(s)	494, 1157, 1337
ArsI	GACNNNNNNTTYG	2 cut(s)	859, 891
AseI	ATTAAT	1 cut(s)	600
AspS9I	GGNCC	4 cut(s)	97, 1040, 1164, 1290
AsuC2I	CCSGG	2 cut(s)	14, 1055
AsuHPI	GGTGA	7 cut(s)	472, 575, 638, 704, 1022, 1103, 1364
AvaII	GGWCC	2 cut(s)	97, 1164
BaeGI	GKGCMC	1 cut(s)	114
BalI	TGGCCA	1 cut(s)	908
BbsI	GAAGAC	2 cut(s)	241, 759
Bbv12I	GWGCWC	3 cut(s)	114, 431, 1222
BbvI	GCAGC	3 cut(s)	506, 1144, 1324
BccI	CCATC	4 cut(s)	462, 700, 717, 1274
BcgI	CGANNNNNNTGC	2 cut(s)	1232, 1266
BciT130I	CCWGG	3 cut(s)	936, 1038, 1168
BclI	TGATCA	1 cut(s)	814
BcnI	CCSGG	2 cut(s)	14, 1055
BfaI	CTAG	1 cut(s)	1182
BfmI	CTRYAG	1 cut(s)	1158
BglI	GCCNNNNNGGC	1 cut(s)	1281
BglII	AGATCT	1 cut(s)	1098
BisI	GCNGC	5 cut(s)	495, 1158, 1179, 1289, 1338
BlsI	GCNGC	5 cut(s)	496, 1159, 1180, 1290, 1339
BmcAI	AGTACT	1 cut(s)	1385
Bme1390I	CCNGG	5 cut(s)	14, 936, 1038, 1055, 1168
Bme18I	GGWCC	2 cut(s)	97, 1164
BmgT120I	GGNCC	4 cut(s)	97, 1040, 1164, 1290
BmiI	GGNNCC	5 cut(s)	147, 452, 526, 780, 1165
BmrFI	CCNGG	5 cut(s)	14, 936, 1038, 1055, 1168
BmrI	ACTGGG	1 cut(s)	948
BmsI	GCATC	3 cut(s)	112, 391, 1245
BmuI	ACTGGG	1 cut(s)	948
BpiI	GAAGAC	2 cut(s)	241, 759
BpuMI	CCSGG	2 cut(s)	14, 1055
BsaBI	GATNNNNATC	1 cut(s)	813
BsaJI	CCNNGG	2 cut(s)	863, 1037
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 959, 1130
Bse1I	ACTGG	3 cut(s)	367, 954, 1354
Bse3DI	GCAATG	2 cut(s)	357, 1248
Bse8I	GATNNNNATC	1 cut(s)	813
BseBI	CCWGG	3 cut(s)	936, 1038, 1168
BseDI	CCNNGG	2 cut(s)	863, 1037
BseGI	GGATG	3 cut(s)	454, 616, 1378
BseJI	GATNNNNATC	1 cut(s)	813
BseLI	CCNNNNNNNGG	3 cut(s)	106, 959, 1130
BseMI	GCAATG	2 cut(s)	357, 1248
BseMII	CTCAG	2 cut(s)	562, 1271
BseNI	ACTGG	3 cut(s)	367, 954, 1354
BseSI	GKGCMC	1 cut(s)	114
BseXI	GCAGC	3 cut(s)	506, 1144, 1324
BseYI	CCCAGC	1 cut(s)	680
BsgI	GTGCAG	1 cut(s)	1323
BshFI	GGCC	5 cut(s)	837, 908, 1042, 1275, 1291
BsiHKAI	GWGCWC	3 cut(s)	114, 431, 1222
BsiSI	CCGG	2 cut(s)	13, 1055
BslFI	GGGAC	4 cut(s)	391, 697, 1106, 1177
BslI	CCNNNNNNNGG	3 cut(s)	106, 959, 1130
BsmFI	GGGAC	4 cut(s)	391, 697, 1106, 1177
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	5 cut(s)	837, 908, 1042, 1275, 1291
Bsp1286I	GDGCHC	3 cut(s)	114, 431, 1222
Bsp143I	GATC	8 cut(s)	213, 328, 463, 544, 814, 931, 1098, 1170
BspACI	CCGC	4 cut(s)	1087, 1179, 1288, 1306
BspANI	GGCC	5 cut(s)	837, 908, 1042, 1275, 1291
BspCNI	CTCAG	2 cut(s)	561, 1270
BspHI	TCATGA	2 cut(s)	52, 1111
BspLI	GGNNCC	5 cut(s)	147, 452, 526, 780, 1165
BspMAI	CTGCAG	1 cut(s)	1162
BspPI	GGATC	5 cut(s)	323, 458, 552, 926, 1178
BsrBI	CCGCTC	1 cut(s)	1308
BsrDI	GCAATG	2 cut(s)	357, 1248
BsrI	ACTGG	3 cut(s)	367, 954, 1354
BssECI	CCNNGG	2 cut(s)	863, 1037
BssMI	GATC	8 cut(s)	213, 328, 463, 544, 814, 931, 1098, 1170
Bst2UI	CCWGG	3 cut(s)	936, 1038, 1168
Bst4CI	ACNGT	4 cut(s)	101, 623, 1078, 1217
BstC8I	GCNNGC	2 cut(s)	1222, 1286
BstDEI	CTNAG	4 cut(s)	126, 240, 548, 1257
BstEII	GGTNACC	1 cut(s)	728
BstF5I	GGATG	3 cut(s)	454, 616, 1378
BstKTI	GATC	8 cut(s)	216, 331, 466, 547, 817, 934, 1101, 1173
BstMBI	GATC	8 cut(s)	213, 328, 463, 544, 814, 931, 1098, 1170
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 1184, 1281
BstNI	CCWGG	3 cut(s)	936, 1038, 1168
BstPI	GGTNACC	1 cut(s)	728
BstSCI	CCNGG	5 cut(s)	12, 934, 1036, 1053, 1166
BstSFI	CTRYAG	1 cut(s)	1158
BstSLI	GKGCMC	1 cut(s)	114
BstV1I	GCAGC	3 cut(s)	506, 1144, 1324
BstV2I	GAAGAC	2 cut(s)	241, 759
BstX2I	RGATCY	2 cut(s)	544, 1098
BstYI	RGATCY	2 cut(s)	544, 1098
BsuRI	GGCC	5 cut(s)	837, 908, 1042, 1275, 1291
BtsCI	GGATG	3 cut(s)	454, 616, 1378
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	5 cut(s)	195, 510, 628, 750, 1222
Cac8I	GCNNGC	2 cut(s)	1222, 1286
CaiI	CAGNNNCTG	1 cut(s)	1043
CciI	TCATGA	2 cut(s)	52, 1111
Cfr13I	GGNCC	4 cut(s)	97, 1040, 1164, 1290
CseI	GACGC	1 cut(s)	393
Csp6I	GTAC	7 cut(s)	151, 370, 916, 1213, 1298, 1365, 1384
CspCI	CAANNNNNGTGG	2 cut(s)	1300, 1335
CviQI	GTAC	7 cut(s)	151, 370, 916, 1213, 1298, 1365, 1384
DdeI	CTNAG	4 cut(s)	126, 240, 548, 1257
DpnI	GATC	8 cut(s)	215, 330, 465, 546, 816, 933, 1100, 1172
DpnII	GATC	8 cut(s)	213, 328, 463, 544, 814, 931, 1098, 1170
EaeI	YGGCCR	1 cut(s)	906
Eco147I	AGGCCT	2 cut(s)	837, 1275
Eco32I	GATATC	1 cut(s)	58
Eco47I	GGWCC	2 cut(s)	97, 1164
Eco57I	CTGAAG	4 cut(s)	207, 235, 318, 1400
Eco91I	GGTNACC	1 cut(s)	728
EcoO109I	RGGNCCY	1 cut(s)	1040
EcoO65I	GGTNACC	1 cut(s)	728
EcoRII	CCWGG	3 cut(s)	934, 1036, 1166
EcoRV	GATATC	1 cut(s)	58
FalI	AAGNNNNNCTT	4 cut(s)	233, 265, 1277, 1309
FaqI	GGGAC	4 cut(s)	391, 697, 1106, 1177
FauI	CCCGC	2 cut(s)	1080, 1313
FbaI	TGATCA	1 cut(s)	814
Fnu4HI	GCNGC	5 cut(s)	495, 1158, 1179, 1289, 1338
FokI	GGATG	3 cut(s)	441, 623, 1385
Fsp4HI	GCNGC	5 cut(s)	495, 1158, 1179, 1289, 1338
FspBI	CTAG	1 cut(s)	1182
GluI	GCNGC	5 cut(s)	495, 1158, 1179, 1289, 1338
GsaI	CCCAGC	1 cut(s)	684
HaeIII	GGCC	5 cut(s)	837, 908, 1042, 1275, 1291
HapII	CCGG	2 cut(s)	13, 1055
HgaI	GACGC	1 cut(s)	393
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HindIII	AAGCTT	2 cut(s)	219, 872
HinfI	GANTC	1 cut(s)	629
HpaII	CCGG	2 cut(s)	13, 1055
HphI	GGTGA	7 cut(s)	472, 575, 638, 704, 1022, 1103, 1364
Hpy166II	GTNNAC	5 cut(s)	112, 207, 480, 889, 1013
Hpy188I	TCNGA	9 cut(s)	226, 298, 328, 337, 487, 697, 867, 1243, 1260
Hpy188III	TCNNGA	6 cut(s)	53, 286, 550, 720, 1021, 1112
Hpy8I	GTNNAC	5 cut(s)	112, 207, 480, 889, 1013
HpyAV	CCTTC	4 cut(s)	342, 1027, 1060, 1255
HpyCH4III	ACNGT	4 cut(s)	101, 623, 1078, 1217
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 1184, 1281
HpyF3I	CTNAG	4 cut(s)	126, 240, 548, 1257
Ksp22I	TGATCA	1 cut(s)	814
Kzo9I	GATC	8 cut(s)	213, 328, 463, 544, 814, 931, 1098, 1170
LmnI	GCTCC	4 cut(s)	456, 530, 784, 1313
Lsp1109I	GCAGC	3 cut(s)	506, 1144, 1324
LweI	GCATC	3 cut(s)	112, 391, 1245
MaeI	CTAG	1 cut(s)	1182
MaeIII	GTNAC	3 cut(s)	254, 728, 1045
MalI	GATC	8 cut(s)	215, 330, 465, 546, 816, 933, 1100, 1172
MbiI	CCGCTC	1 cut(s)	1308
MboI	GATC	8 cut(s)	213, 328, 463, 544, 814, 931, 1098, 1170
MboII	GAAGA	4 cut(s)	13, 241, 304, 764
MflI	RGATCY	2 cut(s)	544, 1098
MhlI	GDGCHC	3 cut(s)	114, 431, 1222
MlsI	TGGCCA	1 cut(s)	908
MluCI	AATT	5 cut(s)	316, 534, 783, 830, 1406
MluNI	TGGCCA	1 cut(s)	908
MmeI	TCCRAC	1 cut(s)	685
Mox20I	TGGCCA	1 cut(s)	908
MscI	TGGCCA	1 cut(s)	908
MseI	TTAA	3 cut(s)	360, 600, 948
MslI	CAYNNNNRTG	5 cut(s)	459, 611, 908, 1008, 1197
Msp20I	TGGCCA	1 cut(s)	908
MspI	CCGG	2 cut(s)	13, 1055
MspR9I	CCNGG	5 cut(s)	14, 936, 1038, 1055, 1168
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	3 cut(s)	936, 1038, 1168
MwoI	GCNNNNNNNGC	3 cut(s)	91, 1184, 1281
NciI	CCSGG	2 cut(s)	14, 1055
NdeII	GATC	8 cut(s)	213, 328, 463, 544, 814, 931, 1098, 1170
NlaIV	GGNNCC	5 cut(s)	147, 452, 526, 780, 1165
PagI	TCATGA	2 cut(s)	52, 1111
PceI	AGGCCT	2 cut(s)	837, 1275
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	629
PfoI	TCCNGGA	2 cut(s)	934, 1053
PkrI	GCNGC	5 cut(s)	496, 1159, 1180, 1290, 1339
PshBI	ATTAAT	1 cut(s)	600
PsiI	TTATAA	1 cut(s)	998
Psp6I	CCWGG	3 cut(s)	934, 1036, 1166
PspEI	GGTNACC	1 cut(s)	728
PspFI	CCCAGC	1 cut(s)	680
PspGI	CCWGG	3 cut(s)	934, 1036, 1166
PspN4I	GGNNCC	5 cut(s)	147, 452, 526, 780, 1165
PspPI	GGNCC	4 cut(s)	97, 1040, 1164, 1290
PstI	CTGCAG	1 cut(s)	1162
PstNI	CAGNNNCTG	1 cut(s)	1043
PsuI	RGATCY	2 cut(s)	544, 1098
RsaI	GTAC	7 cut(s)	152, 371, 917, 1214, 1299, 1366, 1385
RsaNI	GTAC	7 cut(s)	151, 370, 916, 1213, 1298, 1365, 1384
RseI	CAYNNNNRTG	5 cut(s)	459, 611, 908, 1008, 1197
SaqAI	TTAA	3 cut(s)	360, 600, 948
SatI	GCNGC	5 cut(s)	495, 1158, 1179, 1289, 1338
Sau3AI	GATC	8 cut(s)	213, 328, 463, 544, 814, 931, 1098, 1170
Sau96I	GGNCC	4 cut(s)	97, 1040, 1164, 1290
ScaI	AGTACT	1 cut(s)	1385
ScrFI	CCNGG	5 cut(s)	14, 936, 1038, 1055, 1168
SduI	GDGCHC	3 cut(s)	114, 431, 1222
SfaNI	GCATC	3 cut(s)	112, 391, 1245
SfcI	CTRYAG	1 cut(s)	1158
SinI	GGWCC	2 cut(s)	97, 1164
SmiMI	CAYNNNNRTG	5 cut(s)	459, 611, 908, 1008, 1197
Sse9I	AATT	5 cut(s)	316, 534, 783, 830, 1406
SseBI	AGGCCT	2 cut(s)	837, 1275
SsiI	CCGC	4 cut(s)	1087, 1179, 1288, 1306
SspMI	CTAG	1 cut(s)	1182
StuI	AGGCCT	2 cut(s)	837, 1275
StyD4I	CCNGG	5 cut(s)	12, 934, 1036, 1053, 1166
TaaI	ACNGT	4 cut(s)	101, 623, 1078, 1217
TasI	AATT	5 cut(s)	316, 534, 783, 830, 1406
TatI	WGTACW	4 cut(s)	915, 1212, 1297, 1383
TauI	GCSGC	2 cut(s)	1181, 1291
TfiI	GAWTC	1 cut(s)	629
Tru1I	TTAA	3 cut(s)	360, 600, 948
Tru9I	TTAA	3 cut(s)	360, 600, 948
TscAI	CASTG	5 cut(s)	202, 517, 628, 750, 1222
TseI	GCWGC	3 cut(s)	494, 1157, 1337
TspDTI	ATGAA	5 cut(s)	13, 102, 926, 1100, 1128
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	5 cut(s)	202, 517, 628, 750, 1222
VneI	GTGCAC	1 cut(s)	110
VpaK11BI	GGWCC	2 cut(s)	97, 1164
VspI	ATTAAT	1 cut(s)	600
XspI	CTAG	1 cut(s)	1182
ZrmI	AGTACT	1 cut(s)	1385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.